Wall clock time and date at job start Tue Mar 31 2020 06:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46999 * 2 1 4 4 C 1.52998 * 109.46634 * 240.00642 * 2 1 3 5 5 C 1.50696 * 109.47778 * 65.00012 * 4 2 1 6 6 O 1.20835 * 119.99622 * 0.02562 * 5 4 2 7 7 O 1.34267 * 120.00504 * 179.97438 * 5 4 2 8 8 C 1.35917 * 117.00216 * 175.01282 * 7 5 4 9 9 C 1.38824 * 120.02026 * 255.02139 * 8 7 5 10 10 C 1.38192 * 120.07836 * 179.72225 * 9 8 7 11 11 C 1.38157 * 120.12633 * 0.54996 * 10 9 8 12 12 C 1.38894 * 120.03673 * 359.72308 * 11 10 9 13 13 O 1.35750 * 120.03798 * 179.97438 * 12 11 10 14 14 C 1.34823 * 117.00198 * 185.62265 * 13 12 11 15 15 H 1.08006 * 119.99763 * 354.93319 * 14 13 12 16 16 C 1.38656 * 120.00092 * 174.94243 * 14 13 12 17 17 N 1.31554 * 120.00043 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99792 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47341 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46958 * 119.99727 * 18 16 14 21 21 H 1.48503 * 109.46768 * 239.99597 * 18 16 14 22 22 C 1.38573 * 120.02293 * 75.29247 * 8 7 5 23 23 C 1.52995 * 109.47181 * 120.00486 * 2 1 3 24 24 C 1.53000 * 117.49960 * 248.62122 * 23 2 1 25 25 C 1.52992 * 117.49869 * 179.97438 * 23 2 1 26 26 H 1.08999 * 109.47220 * 59.99248 * 1 2 3 27 27 H 1.09000 * 109.46825 * 299.99859 * 1 2 3 28 28 H 1.08994 * 109.47194 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46624 * 185.00273 * 4 2 1 30 30 H 1.09008 * 109.47380 * 304.99449 * 4 2 1 31 31 H 1.08001 * 119.96025 * 359.97438 * 9 8 7 32 32 H 1.08007 * 119.93714 * 180.25864 * 10 9 8 33 33 H 1.07993 * 119.97944 * 179.70831 * 11 10 9 34 34 H 0.97000 * 119.99720 * 180.02562 * 17 16 14 35 35 H 1.08004 * 120.05909 * 359.97438 * 22 8 7 36 36 H 1.09005 * 115.54864 * 34.32617 * 23 2 1 37 37 H 1.09005 * 117.49566 * 359.97438 * 24 23 2 38 38 H 1.08995 * 117.49674 * 145.01872 * 24 23 2 39 39 H 1.09002 * 117.50007 * 214.97539 * 25 23 2 40 40 H 1.08999 * 117.50074 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6412 0.0572 -2.4766 6 8 1.0140 1.0838 -2.3636 7 8 1.9839 -0.3894 -3.6956 8 6 1.5051 0.3021 -4.7633 9 6 0.4627 -0.2191 -5.5175 10 6 -0.0289 0.4857 -6.5999 11 6 0.5228 1.7054 -6.9416 12 6 1.5696 2.2289 -6.1938 13 8 2.1120 3.4271 -6.5299 14 6 3.1986 3.8231 -5.8368 15 1 3.5497 3.2357 -5.0012 16 6 3.8650 4.9845 -6.1966 17 7 3.4375 5.6998 -7.2146 18 14 5.3700 5.5336 -5.2358 19 1 5.6426 4.5629 -4.1456 20 1 6.5417 5.5985 -6.1459 21 1 5.1218 6.8762 -4.6519 22 6 2.0609 1.5252 -5.1030 23 6 2.0400 -0.7213 1.2491 24 6 2.7419 0.1224 2.3151 25 6 3.5549 -0.8287 1.4338 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1263 -0.7994 -1.2057 30 1 1.6053 -1.7198 -1.2953 31 1 0.0326 -1.1745 -5.2557 32 1 -0.8428 0.0800 -7.1826 33 1 0.1399 2.2519 -7.7907 34 1 3.9040 6.5121 -7.4665 35 1 2.8746 1.9303 -4.5197 36 1 1.4310 -1.5586 1.5901 37 1 2.8407 1.1914 2.1262 38 1 2.5947 -0.1596 3.3576 39 1 3.9425 -1.7362 1.8969 40 1 4.1883 -0.3851 0.6657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841342846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:11 Heat of formation + Delta-G solvation = -80.902987 kcal Electronic energy + Delta-G solvation = -22583.341307 eV Core-core repulsion = 19136.269946 eV Total energy + Delta-G solvation = -3447.071361 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.39810 -40.66618 -39.38520 -38.33391 -37.34384 -34.37629 -34.24183 -31.52038 -30.72023 -29.28119 -27.46581 -25.22485 -23.92790 -23.37372 -23.13705 -21.95300 -20.62826 -20.12563 -19.53900 -18.40640 -17.73926 -17.36078 -16.89449 -16.56207 -16.11696 -16.02768 -15.73602 -15.51521 -15.01678 -14.80325 -14.64912 -14.21473 -14.00918 -13.78215 -13.33595 -13.12111 -12.91151 -12.77460 -12.55330 -12.45445 -12.32839 -12.23163 -12.18698 -11.94236 -11.86726 -11.63876 -11.37814 -11.04316 -10.90421 -10.86727 -9.81835 -9.17803 -8.55805 -6.25227 0.14001 0.53008 1.07221 1.28333 1.36514 1.46554 1.75388 2.10688 2.70931 2.89870 3.03292 3.35231 3.52525 3.70115 3.89766 3.97785 4.00931 4.14206 4.17303 4.27701 4.30399 4.40296 4.51255 4.54096 4.65246 4.76771 4.79251 4.84809 4.91304 4.98962 5.02140 5.12233 5.16605 5.30070 5.31655 5.36634 5.41267 5.45392 5.50867 5.58967 5.91666 5.99966 6.76922 6.88067 7.63495 8.66875 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.004523 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.630957 B = 6189.043414 C = 7868.613076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 H 0.054 0.946 4 C -0.095 4.095 5 C 0.448 3.552 6 O -0.520 6.520 7 O -0.297 6.297 8 C 0.114 3.886 9 C -0.192 4.192 10 C -0.047 4.047 11 C -0.197 4.197 12 C 0.127 3.873 13 O -0.221 6.221 14 C -0.419 4.419 15 H 0.090 0.910 16 C -0.015 4.015 17 N -0.912 5.912 18 Si 1.016 2.984 19 H -0.260 1.260 20 H -0.260 1.260 21 H -0.264 1.264 22 C -0.250 4.250 23 C -0.143 4.143 24 C -0.185 4.185 25 C -0.179 4.179 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.124 0.876 30 H 0.141 0.859 31 H 0.158 0.842 32 H 0.176 0.824 33 H 0.130 0.870 34 H 0.276 0.724 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -17.092 15.752 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.068 4.068 3 H 0.073 0.927 4 C -0.132 4.132 5 C 0.293 3.707 6 O -0.407 6.407 7 O -0.213 6.213 8 C 0.073 3.927 9 C -0.211 4.211 10 C -0.065 4.065 11 C -0.216 4.216 12 C 0.076 3.924 13 O -0.128 6.128 14 C -0.495 4.495 15 H 0.107 0.893 16 C -0.214 4.214 17 N -0.550 5.550 18 Si 0.834 3.166 19 H -0.183 1.183 20 H -0.184 1.184 21 H -0.189 1.189 22 C -0.270 4.270 23 C -0.161 4.161 24 C -0.222 4.222 25 C -0.216 4.216 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.158 0.842 31 H 0.176 0.824 32 H 0.194 0.806 33 H 0.148 0.852 34 H 0.085 0.915 35 H 0.126 0.874 36 H 0.144 0.856 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.643 -16.401 15.498 22.719 hybrid contribution 0.751 1.084 0.015 1.319 sum -1.892 -15.316 15.513 21.882 Atomic orbital electron populations 1.21905 0.94241 1.02684 1.01913 1.20525 0.96663 0.98128 0.91466 0.92745 1.21681 1.05316 1.00545 0.85638 1.25224 0.75835 0.84640 0.84957 1.90702 1.37966 1.25418 1.86566 1.84544 1.68150 1.54383 1.14191 1.18423 0.95266 0.91053 0.87922 1.21106 0.97418 1.03231 0.99309 1.21087 0.98335 0.91656 0.95394 1.20714 0.99182 0.99098 1.02603 1.19710 0.93752 0.85838 0.93060 1.83950 1.41964 1.29952 1.56892 1.21727 1.04561 1.09745 1.13452 0.89259 1.26534 1.02164 0.94905 0.97769 1.70160 1.41503 1.15833 1.27486 0.84592 0.75550 0.78707 0.77711 1.18330 1.18403 1.18879 1.21175 1.05967 0.97759 1.02076 1.22261 0.95446 1.02263 0.96151 1.23086 1.04767 0.97325 0.97020 1.23077 0.93248 1.02253 1.02982 0.93952 0.92003 0.90688 0.85809 0.84155 0.82406 0.80640 0.85168 0.91482 0.87419 0.85600 0.90002 0.87395 0.86939 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.92 71.98 0.64 -2.44 16 2 C -0.05 -0.97 2.19 -10.80 -0.02 -1.00 16 3 H 0.05 1.38 7.71 -2.39 -0.02 1.36 16 4 C -0.09 -1.84 5.20 29.85 0.16 -1.69 16 5 C 0.45 14.19 7.54 71.23 0.54 14.72 16 6 O -0.52 -20.77 13.40 21.93 0.29 -20.47 16 7 O -0.30 -10.31 10.03 4.60 0.05 -10.27 16 8 C 0.11 4.63 5.19 22.49 0.12 4.74 16 9 C -0.19 -6.43 9.99 22.40 0.22 -6.21 16 10 C -0.05 -1.55 10.03 22.24 0.22 -1.32 16 11 C -0.20 -8.40 9.99 22.41 0.22 -8.18 16 12 C 0.13 6.68 6.64 22.56 0.15 6.83 16 13 O -0.22 -13.80 9.76 -22.66 -0.22 -14.02 16 14 C -0.42 -25.66 9.49 67.92 0.64 -25.01 16 15 H 0.09 5.25 5.20 -2.91 -0.02 5.23 16 16 C -0.02 -0.89 5.49 84.83 0.47 -0.42 16 17 N -0.91 -56.63 13.67 21.61 0.30 -56.33 16 18 Si 1.02 44.41 29.55 68.60 2.03 46.43 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 22 C -0.25 -12.27 8.58 22.48 0.19 -12.08 16 23 C -0.14 -2.00 5.15 -10.80 -0.06 -2.06 16 24 C -0.19 -2.66 10.18 30.61 0.31 -2.35 16 25 C -0.18 -2.32 9.67 30.61 0.30 -2.02 16 26 H 0.04 1.16 5.96 -2.39 -0.01 1.15 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.12 2.01 7.12 -2.38 -0.02 2.00 16 30 H 0.14 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.18 3.95 8.06 -2.91 -0.02 3.92 16 33 H 0.13 5.26 8.06 -2.91 -0.02 5.24 16 34 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.11 5.65 5.64 -2.91 -0.02 5.64 16 36 H 0.13 1.33 8.11 -2.38 -0.02 1.31 16 37 H 0.08 1.40 8.05 -2.38 -0.02 1.38 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.29 7.58 -2.39 -0.02 1.27 16 Total: -1.00 -77.42 340.54 7.59 -69.83 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 1.04 Total: 23.30 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 4.10 Total: -38.47 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.30 Total: -56.33 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: 0.12 Total: -44.76 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -77.42 7.59 -69.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.070 kcal (2) G-P(sol) polarization free energy of solvation -77.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds