Wall clock time and date at job start Tue Mar 31 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47643 * 2 1 4 4 C 1.53006 * 109.46936 * 119.99825 * 2 1 3 5 5 C 1.50700 * 109.47159 * 295.00333 * 4 2 1 6 6 O 1.20824 * 120.00194 * 359.97438 * 5 4 2 7 7 O 1.34263 * 119.99535 * 179.97438 * 5 4 2 8 8 C 1.35923 * 116.99653 * 175.00566 * 7 5 4 9 9 C 1.38823 * 120.02282 * 255.02246 * 8 7 5 10 10 C 1.38194 * 120.08045 * 179.71967 * 9 8 7 11 11 C 1.38157 * 120.12098 * 0.55415 * 10 9 8 12 12 C 1.38889 * 120.04398 * 359.72609 * 11 10 9 13 13 O 1.35748 * 120.04451 * 179.97438 * 12 11 10 14 14 C 1.34832 * 117.00096 * 185.61494 * 13 12 11 15 15 H 1.07996 * 119.99817 * 354.93785 * 14 13 12 16 16 C 1.38659 * 119.99762 * 174.94013 * 14 13 12 17 17 N 1.31552 * 120.00059 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99732 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47295 * 60.00130 * 18 16 14 20 20 H 1.48508 * 109.46797 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47022 * 299.99647 * 18 16 14 22 22 C 1.38574 * 120.01717 * 75.29538 * 8 7 5 23 23 C 1.52996 * 109.47138 * 239.99616 * 2 1 3 24 24 C 1.53009 * 117.49770 * 111.38138 * 23 2 1 25 25 C 1.52998 * 117.50196 * 180.02562 * 23 2 1 26 26 H 1.09005 * 109.46799 * 59.99911 * 1 2 3 27 27 H 1.08994 * 109.47643 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47460 * 300.00177 * 1 2 3 29 29 H 1.09007 * 109.46732 * 55.00116 * 4 2 1 30 30 H 1.09003 * 109.47016 * 174.99332 * 4 2 1 31 31 H 1.08000 * 119.96030 * 359.97438 * 9 8 7 32 32 H 1.08000 * 119.93910 * 180.25566 * 10 9 8 33 33 H 1.08002 * 119.97807 * 179.69585 * 11 10 9 34 34 H 0.97006 * 120.00496 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.06388 * 359.97438 * 22 8 7 36 36 H 1.09002 * 115.56339 * 325.69336 * 23 2 1 37 37 H 1.09001 * 117.50058 * 214.98430 * 24 23 2 38 38 H 1.08998 * 117.49201 * 0.02562 * 24 23 2 39 39 H 1.09010 * 117.49622 * 0.02562 * 25 23 2 40 40 H 1.08996 * 117.50141 * 144.99707 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 8 1.0139 1.0835 2.3637 7 8 1.9830 -0.3903 3.6955 8 6 1.6842 0.4102 4.7527 9 6 2.6895 1.1279 5.3864 10 6 2.3862 1.9465 6.4577 11 6 1.0839 2.0444 6.9085 12 6 0.0751 1.3242 6.2820 13 8 -1.2043 1.4200 6.7253 14 6 -2.1141 0.6081 6.1497 15 1 -1.8285 -0.0189 5.3181 16 6 -3.4161 0.5785 6.6255 17 7 -3.7637 1.3420 7.6388 18 14 -4.6762 -0.5468 5.8285 19 1 -4.2216 -1.9561 5.9392 20 1 -5.9829 -0.3931 6.5173 21 1 -4.8260 -0.1860 4.3958 22 6 0.3769 0.5058 5.2021 23 6 2.0400 -0.7213 -1.2492 24 6 2.7420 0.1226 -2.3151 25 6 3.5549 -0.8287 -1.4340 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7996 1.2056 31 1 3.7091 1.0496 5.0392 32 1 3.1694 2.5071 6.9464 33 1 0.8503 2.6811 7.7491 34 1 -4.6747 1.3215 7.9715 35 1 -0.4058 -0.0549 4.7129 36 1 1.4310 -1.5584 -1.5905 37 1 2.5947 -0.1593 -3.3577 38 1 2.8407 1.1915 -2.1261 39 1 4.1884 -0.3858 -0.6653 40 1 3.9424 -1.7363 -1.8967 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841342847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:14 Heat of formation + Delta-G solvation = -63.060188 kcal Electronic energy + Delta-G solvation = -22587.221293 eV Core-core repulsion = 19140.923653 eV Total energy + Delta-G solvation = -3446.297639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96801 -39.01101 -38.30357 -36.95549 -35.71412 -33.36146 -32.31239 -29.93214 -29.00508 -28.14960 -25.43569 -24.11847 -22.77222 -22.44125 -21.65810 -20.57613 -19.76369 -18.28734 -17.86472 -16.98988 -16.23054 -15.97757 -15.66872 -15.13969 -14.74025 -14.52543 -14.31239 -13.87910 -13.66705 -13.46490 -13.12324 -12.98752 -12.70973 -12.20778 -11.89482 -11.83004 -11.60494 -11.46898 -11.37416 -11.28034 -11.05695 -11.02278 -10.83936 -10.51999 -10.48238 -10.29886 -10.20778 -10.12505 -9.52899 -8.87611 -8.16080 -7.35690 -6.48625 -4.08095 1.77915 2.21174 2.37317 3.06741 3.12136 3.15122 3.15829 3.55223 3.94329 4.37312 4.47595 4.55191 4.66376 4.81486 4.89592 5.03390 5.05741 5.18862 5.28195 5.31420 5.40244 5.50350 5.59522 5.61038 5.64859 5.77763 5.85721 5.88051 5.95177 6.00465 6.16042 6.17716 6.28543 6.42460 6.56083 6.91620 7.01366 7.08995 7.13571 7.32752 7.60190 7.94935 8.18752 8.96322 9.62668 10.68821 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.004266 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.536821 B = 6561.514792 C = 8072.117060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.049 4.049 3 H 0.081 0.919 4 C -0.105 4.105 5 C 0.451 3.549 6 O -0.481 6.481 7 O -0.299 6.299 8 C 0.121 3.879 9 C -0.213 4.213 10 C -0.065 4.065 11 C -0.188 4.188 12 C 0.164 3.836 13 O -0.170 6.170 14 C -0.394 4.394 15 H 0.090 0.910 16 C 0.042 3.958 17 N -0.860 5.860 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.269 1.269 22 C -0.230 4.230 23 C -0.147 4.147 24 C -0.177 4.177 25 C -0.183 4.183 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.272 0.728 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.251 -4.998 -14.839 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.067 4.067 3 H 0.099 0.901 4 C -0.143 4.143 5 C 0.294 3.706 6 O -0.366 6.366 7 O -0.214 6.214 8 C 0.081 3.919 9 C -0.233 4.233 10 C -0.083 4.083 11 C -0.207 4.207 12 C 0.110 3.890 13 O -0.073 6.073 14 C -0.470 4.470 15 H 0.108 0.892 16 C -0.163 4.163 17 N -0.494 5.494 18 Si 0.765 3.235 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.194 1.194 22 C -0.250 4.250 23 C -0.165 4.165 24 C -0.214 4.214 25 C -0.220 4.220 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.149 0.851 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.685 -4.480 -14.540 19.184 hybrid contribution -0.653 -0.621 -0.421 0.995 sum 11.032 -5.101 -14.962 19.276 Atomic orbital electron populations 1.21972 0.93843 1.01938 1.03506 1.20560 0.96965 0.98967 0.90254 0.90074 1.21465 1.03761 1.00284 0.88746 1.24055 0.77011 0.84873 0.84633 1.90695 1.35346 1.24192 1.86326 1.84514 1.75116 1.47284 1.14516 1.18215 0.93168 0.93493 0.87070 1.20492 0.98044 1.02597 1.02135 1.20484 0.95382 0.96979 0.95466 1.20328 0.91359 1.05566 1.03477 1.19120 0.86288 0.92420 0.91209 1.83995 1.12045 1.54928 1.56345 1.21273 0.89218 1.20848 1.15623 0.89229 1.25281 0.97112 0.97700 0.96170 1.70023 1.19534 1.36635 1.23256 0.85789 0.78994 0.79661 0.79101 1.19393 1.20112 1.19395 1.21196 0.95662 1.06168 1.01960 1.22357 0.94743 1.02028 0.97410 1.23018 1.04454 0.97764 0.96207 1.22991 0.93878 1.01831 1.03315 0.92424 0.92884 0.90423 0.87563 0.87724 0.86818 0.86015 0.85892 0.91840 0.85098 0.87509 0.88868 0.88695 0.88662 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 8.92 37.16 0.33 -1.52 16 2 C -0.05 -0.52 2.19 -90.62 -0.20 -0.72 16 3 H 0.08 0.96 7.71 -51.93 -0.40 0.56 16 4 C -0.10 -1.15 5.20 -27.88 -0.14 -1.29 16 5 C 0.45 7.33 7.54 36.01 0.27 7.60 16 6 O -0.48 -9.40 13.40 -18.75 -0.25 -9.65 16 7 O -0.30 -5.38 10.03 -23.61 -0.24 -5.62 16 8 C 0.12 2.50 5.18 -39.24 -0.20 2.30 16 9 C -0.21 -3.96 9.99 -39.38 -0.39 -4.35 16 10 C -0.06 -1.18 10.03 -39.63 -0.40 -1.57 16 11 C -0.19 -4.02 9.99 -39.37 -0.39 -4.42 16 12 C 0.16 4.10 6.65 -39.13 -0.26 3.84 16 13 O -0.17 -4.94 9.76 0.05 0.00 -4.94 16 14 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 15 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 16 C 0.04 1.17 5.49 -17.52 -0.10 1.08 16 17 N -0.86 -25.34 13.67 55.48 0.76 -24.58 16 18 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 C -0.23 -5.41 8.58 -39.25 -0.34 -5.74 16 23 C -0.15 -1.23 5.15 -90.62 -0.47 -1.69 16 24 C -0.18 -1.36 10.18 -26.70 -0.27 -1.63 16 25 C -0.18 -1.33 9.67 -26.71 -0.26 -1.59 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.18 5.96 -51.93 -0.31 0.87 16 29 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.10 0.92 7.12 -51.93 -0.37 0.55 16 31 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.13 3.16 5.64 -52.49 -0.30 2.87 16 36 H 0.11 0.83 8.11 -51.93 -0.42 0.40 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 39 H 0.09 0.69 7.58 -51.92 -0.39 0.29 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -32.27 340.54 -7.54 -39.81 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.40 Total: 4.75 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.52 Total: -20.70 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.76 Total: -24.58 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.49 Total: -20.21 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.27 -7.54 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.249 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds