Wall clock time and date at job start Tue Mar 31 2020 06:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47643 * 2 1 4 4 C 1.53006 * 109.46936 * 119.99825 * 2 1 3 5 5 C 1.50700 * 109.47159 * 295.00333 * 4 2 1 6 6 O 1.20824 * 120.00194 * 359.97438 * 5 4 2 7 7 O 1.34263 * 119.99535 * 179.97438 * 5 4 2 8 8 C 1.35923 * 116.99653 * 175.00566 * 7 5 4 9 9 C 1.38823 * 120.02282 * 255.02246 * 8 7 5 10 10 C 1.38194 * 120.08045 * 179.71967 * 9 8 7 11 11 C 1.38157 * 120.12098 * 0.55415 * 10 9 8 12 12 C 1.38889 * 120.04398 * 359.72609 * 11 10 9 13 13 O 1.35748 * 120.04451 * 179.97438 * 12 11 10 14 14 C 1.34832 * 117.00096 * 185.61494 * 13 12 11 15 15 H 1.07996 * 119.99817 * 354.93785 * 14 13 12 16 16 C 1.38659 * 119.99762 * 174.94013 * 14 13 12 17 17 N 1.31552 * 120.00059 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99732 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47295 * 60.00130 * 18 16 14 20 20 H 1.48508 * 109.46797 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47022 * 299.99647 * 18 16 14 22 22 C 1.38574 * 120.01717 * 75.29538 * 8 7 5 23 23 C 1.52996 * 109.47138 * 239.99616 * 2 1 3 24 24 C 1.53009 * 117.49770 * 111.38138 * 23 2 1 25 25 C 1.52998 * 117.50196 * 180.02562 * 23 2 1 26 26 H 1.09005 * 109.46799 * 59.99911 * 1 2 3 27 27 H 1.08994 * 109.47643 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47460 * 300.00177 * 1 2 3 29 29 H 1.09007 * 109.46732 * 55.00116 * 4 2 1 30 30 H 1.09003 * 109.47016 * 174.99332 * 4 2 1 31 31 H 1.08000 * 119.96030 * 359.97438 * 9 8 7 32 32 H 1.08000 * 119.93910 * 180.25566 * 10 9 8 33 33 H 1.08002 * 119.97807 * 179.69585 * 11 10 9 34 34 H 0.97006 * 120.00496 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.06388 * 359.97438 * 22 8 7 36 36 H 1.09002 * 115.56339 * 325.69336 * 23 2 1 37 37 H 1.09001 * 117.50058 * 214.98430 * 24 23 2 38 38 H 1.08998 * 117.49201 * 0.02562 * 24 23 2 39 39 H 1.09010 * 117.49622 * 0.02562 * 25 23 2 40 40 H 1.08996 * 117.50141 * 144.99707 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 8 1.0139 1.0835 2.3637 7 8 1.9830 -0.3903 3.6955 8 6 1.6842 0.4102 4.7527 9 6 2.6895 1.1279 5.3864 10 6 2.3862 1.9465 6.4577 11 6 1.0839 2.0444 6.9085 12 6 0.0751 1.3242 6.2820 13 8 -1.2043 1.4200 6.7253 14 6 -2.1141 0.6081 6.1497 15 1 -1.8285 -0.0189 5.3181 16 6 -3.4161 0.5785 6.6255 17 7 -3.7637 1.3420 7.6388 18 14 -4.6762 -0.5468 5.8285 19 1 -4.2216 -1.9561 5.9392 20 1 -5.9829 -0.3931 6.5173 21 1 -4.8260 -0.1860 4.3958 22 6 0.3769 0.5058 5.2021 23 6 2.0400 -0.7213 -1.2492 24 6 2.7420 0.1226 -2.3151 25 6 3.5549 -0.8287 -1.4340 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7996 1.2056 31 1 3.7091 1.0496 5.0392 32 1 3.1694 2.5071 6.9464 33 1 0.8503 2.6811 7.7491 34 1 -4.6747 1.3215 7.9715 35 1 -0.4058 -0.0549 4.7129 36 1 1.4310 -1.5584 -1.5905 37 1 2.5947 -0.1593 -3.3577 38 1 2.8407 1.1915 -2.1261 39 1 4.1884 -0.3858 -0.6653 40 1 3.9424 -1.7363 -1.8967 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841342847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:13 Heat of formation + Delta-G solvation = -80.666728 kcal Electronic energy + Delta-G solvation = -22587.984769 eV Core-core repulsion = 19140.923653 eV Total energy + Delta-G solvation = -3447.061116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.39604 -40.66174 -39.38072 -38.32767 -37.34030 -34.37090 -34.23707 -31.52395 -30.71222 -29.29295 -27.46165 -25.23812 -23.89909 -23.38105 -23.11555 -21.94746 -20.62525 -20.13052 -19.52747 -18.39893 -17.62360 -17.51257 -16.89467 -16.48418 -16.12785 -16.03987 -15.71070 -15.50552 -15.01306 -14.84409 -14.48211 -14.42398 -13.98037 -13.74358 -13.32090 -13.09297 -12.96020 -12.76183 -12.53545 -12.44220 -12.33254 -12.24406 -12.20275 -11.95023 -11.84254 -11.62441 -11.40473 -11.03736 -10.88557 -10.85224 -9.81389 -9.17594 -8.54840 -6.24521 0.14262 0.53263 1.07670 1.28942 1.39375 1.45486 1.75617 2.11808 2.71403 2.91750 3.03898 3.35637 3.52687 3.70463 3.90537 3.97227 4.01272 4.14262 4.17249 4.28904 4.30824 4.40298 4.51259 4.54419 4.63096 4.75983 4.80671 4.86891 4.91180 4.99036 5.01695 5.12991 5.15600 5.29028 5.32805 5.36332 5.41785 5.45402 5.50860 5.58440 5.91968 6.00065 6.77235 6.88653 7.63945 8.67361 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.004266 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.536821 B = 6561.514792 C = 8072.117060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.044 4.044 3 H 0.065 0.935 4 C -0.095 4.095 5 C 0.448 3.552 6 O -0.520 6.520 7 O -0.297 6.297 8 C 0.114 3.886 9 C -0.193 4.193 10 C -0.047 4.047 11 C -0.197 4.197 12 C 0.127 3.873 13 O -0.221 6.221 14 C -0.420 4.420 15 H 0.091 0.909 16 C -0.015 4.015 17 N -0.913 5.913 18 Si 1.014 2.986 19 H -0.256 1.256 20 H -0.263 1.263 21 H -0.262 1.262 22 C -0.249 4.249 23 C -0.151 4.151 24 C -0.182 4.182 25 C -0.173 4.173 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.158 0.842 32 H 0.176 0.824 33 H 0.130 0.870 34 H 0.276 0.724 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.130 -6.452 -16.792 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.063 4.063 3 H 0.083 0.917 4 C -0.132 4.132 5 C 0.293 3.707 6 O -0.406 6.406 7 O -0.213 6.213 8 C 0.073 3.927 9 C -0.212 4.212 10 C -0.065 4.065 11 C -0.216 4.216 12 C 0.076 3.924 13 O -0.127 6.127 14 C -0.496 4.496 15 H 0.108 0.892 16 C -0.214 4.214 17 N -0.550 5.550 18 Si 0.833 3.167 19 H -0.180 1.180 20 H -0.187 1.187 21 H -0.186 1.186 22 C -0.269 4.269 23 C -0.169 4.169 24 C -0.219 4.219 25 C -0.210 4.210 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.146 0.854 30 H 0.154 0.846 31 H 0.175 0.825 32 H 0.193 0.807 33 H 0.148 0.852 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.628 -5.941 -16.515 22.848 hybrid contribution -1.209 -0.106 0.091 1.217 sum 13.419 -6.047 -16.424 22.054 Atomic orbital electron populations 1.21943 0.95258 1.02249 1.01815 1.20487 0.95759 0.98579 0.91444 0.91663 1.21690 1.05747 1.00145 0.85634 1.25220 0.75780 0.84750 0.84907 1.90700 1.37101 1.26295 1.86532 1.84546 1.74980 1.47054 1.14682 1.18424 0.92461 0.93723 0.88066 1.21103 0.99403 1.00002 1.00671 1.21081 0.94897 0.95995 0.94522 1.20710 0.92157 1.05084 1.03692 1.19713 0.86021 0.94113 0.92535 1.83952 1.13732 1.56765 1.58262 1.21663 0.90133 1.21556 1.16250 0.89176 1.26541 0.98883 0.99269 0.96678 1.70148 1.20349 1.39113 1.25430 0.84727 0.76121 0.77678 0.78198 1.17982 1.18709 1.18622 1.21179 0.96882 1.06694 1.02139 1.22232 0.95861 1.02373 0.96408 1.23091 1.04499 0.97551 0.96783 1.23090 0.92808 1.02138 1.02951 0.91808 0.91564 0.94368 0.85400 0.84557 0.82466 0.80677 0.85193 0.91479 0.87277 0.86483 0.87744 0.89409 0.88407 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 8.92 71.98 0.64 -3.03 16 2 C -0.04 -0.87 2.19 -10.79 -0.02 -0.89 16 3 H 0.06 1.49 7.71 -2.39 -0.02 1.47 16 4 C -0.10 -1.84 5.20 29.85 0.16 -1.68 16 5 C 0.45 14.13 7.54 71.24 0.54 14.67 16 6 O -0.52 -20.70 13.40 21.97 0.29 -20.41 16 7 O -0.30 -10.28 10.03 4.56 0.05 -10.23 16 8 C 0.11 4.62 5.18 22.49 0.12 4.73 16 9 C -0.19 -6.49 9.99 22.40 0.22 -6.27 16 10 C -0.05 -1.56 10.03 22.24 0.22 -1.33 16 11 C -0.20 -8.43 9.99 22.41 0.22 -8.21 16 12 C 0.13 6.67 6.65 22.56 0.15 6.82 16 13 O -0.22 -13.76 9.76 -22.74 -0.22 -13.98 16 14 C -0.42 -25.66 9.49 67.92 0.64 -25.02 16 15 H 0.09 5.24 5.20 -2.91 -0.02 5.23 16 16 C -0.02 -0.88 5.49 84.84 0.47 -0.42 16 17 N -0.91 -56.70 13.67 21.61 0.30 -56.40 16 18 Si 1.01 44.19 29.55 68.60 2.03 46.21 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 22 C -0.25 -12.19 8.58 22.49 0.19 -11.99 16 23 C -0.15 -2.08 5.15 -10.79 -0.06 -2.14 16 24 C -0.18 -2.34 10.18 30.61 0.31 -2.03 16 25 C -0.17 -1.90 9.67 30.61 0.30 -1.61 16 26 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 1.21 5.96 -2.39 -0.01 1.19 16 29 H 0.13 2.00 8.14 -2.38 -0.02 1.99 16 30 H 0.14 1.83 7.12 -2.39 -0.02 1.81 16 31 H 0.16 4.00 8.06 -2.91 -0.02 3.97 16 32 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.13 5.26 8.06 -2.91 -0.02 5.24 16 34 H 0.28 15.62 8.31 -92.70 -0.77 14.85 16 35 H 0.11 5.68 5.64 -2.91 -0.02 5.66 16 36 H 0.12 1.42 8.11 -2.39 -0.02 1.40 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.25 8.05 -2.39 -0.02 1.23 16 39 H 0.10 1.04 7.58 -2.38 -0.02 1.02 16 40 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -77.14 340.54 7.59 -69.55 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 1.04 Total: 23.65 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 4.10 Total: -38.39 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.30 Total: -56.40 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: 0.12 Total: -44.62 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -77.14 7.59 -69.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.115 kcal (2) G-P(sol) polarization free energy of solvation -77.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds