Wall clock time and date at job start Tue Mar 31 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00035 * 2 1 4 4 C 1.52998 * 109.47087 * 119.99978 * 3 2 1 5 5 C 1.52999 * 109.47174 * 240.00520 * 3 2 1 6 6 C 1.53001 * 109.46674 * 299.99799 * 5 3 2 7 7 C 1.50701 * 109.46937 * 0.02562 * 3 2 1 8 8 O 1.20826 * 120.00028 * 239.99751 * 7 3 2 9 9 O 1.34266 * 120.00334 * 59.99878 * 7 3 2 10 10 C 1.35919 * 117.00235 * 174.94766 * 9 7 3 11 11 C 1.38823 * 120.01958 * 255.28538 * 10 9 7 12 12 C 1.38195 * 120.08052 * 179.74215 * 11 10 9 13 13 C 1.38150 * 120.12275 * 0.23380 * 12 11 10 14 14 C 1.38901 * 120.04300 * 0.02562 * 13 12 11 15 15 O 1.35745 * 120.04126 * 180.02562 * 14 13 12 16 16 C 1.34829 * 117.00075 * 174.40591 * 15 14 13 17 17 H 1.07999 * 119.99917 * 5.06746 * 16 15 14 18 18 C 1.38650 * 120.00292 * 185.06122 * 16 15 14 19 19 N 1.31557 * 120.00021 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00297 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47008 * 60.00040 * 20 18 16 22 22 H 1.48496 * 109.47082 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46694 * 300.00196 * 20 18 16 24 24 C 1.38579 * 120.02209 * 75.53401 * 10 9 7 25 25 H 1.07997 * 120.00239 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00289 * 359.97438 * 1 2 3 27 27 H 1.07996 * 119.99575 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47187 * 300.00263 * 4 3 2 29 29 H 1.09007 * 109.46751 * 60.00037 * 4 3 2 30 30 H 1.08995 * 109.47419 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47075 * 59.99991 * 5 3 2 32 32 H 1.08995 * 109.46942 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47418 * 60.00262 * 6 5 3 34 34 H 1.09005 * 109.47028 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.47526 * 299.99915 * 6 5 3 36 36 H 1.07998 * 119.96470 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.93944 * 180.24980 * 12 11 10 38 38 H 1.08005 * 119.98279 * 180.02562 * 13 12 11 39 39 H 0.97000 * 120.00647 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.06050 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 6 2.9430 1.3862 -1.2493 6 6 3.9373 0.2233 -1.2493 7 6 1.0842 2.4505 0.0006 8 8 1.0889 3.2499 -0.9054 9 8 0.2064 2.5828 1.0080 10 6 -0.5767 3.6937 1.0022 11 6 -0.3106 4.7355 1.8803 12 6 -1.1027 5.8679 1.8719 13 6 -2.1645 5.9648 0.9934 14 6 -2.4387 4.9232 0.1164 15 8 -3.4817 5.0186 -0.7472 16 6 -3.6228 4.0259 -1.6486 17 1 -2.9734 3.1639 -1.6087 18 6 -4.6017 4.1117 -2.6268 19 7 -5.3926 5.1619 -2.6756 20 14 -4.7978 2.7360 -3.8753 21 1 -5.1067 1.4669 -3.1689 22 1 -5.9067 3.0666 -4.8059 23 1 -3.5361 2.5809 -4.6429 24 6 -1.6444 3.7849 0.1235 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 2.3165 1.3283 2.1392 29 1 3.6514 0.5576 1.2492 30 1 3.4878 2.3302 1.2495 31 1 2.3163 1.3285 -2.1392 32 1 3.4883 2.3299 -1.2490 33 1 3.3923 -0.7207 -1.2493 34 1 4.5642 0.2813 -2.1391 35 1 4.5640 0.2810 -0.3594 36 1 0.5193 4.6630 2.5676 37 1 -0.8911 6.6788 2.5532 38 1 -2.7818 6.8510 0.9885 39 1 -6.0777 5.2218 -3.3597 40 1 -1.8556 2.9735 -0.5572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:28 Heat of formation + Delta-G solvation = -61.097805 kcal Electronic energy + Delta-G solvation = -23308.126017 eV Core-core repulsion = 19861.913473 eV Total energy + Delta-G solvation = -3446.212544 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.26055 -39.03229 -37.76684 -36.42727 -35.73669 -32.33600 -32.21659 -30.04745 -29.37533 -28.87998 -25.72951 -25.37640 -23.60893 -21.95101 -21.69118 -20.98646 -18.98132 -18.25682 -17.81173 -16.66559 -16.30091 -16.04333 -15.20563 -15.05031 -14.68522 -14.42578 -14.19549 -13.79154 -13.64239 -13.50623 -13.16669 -12.86280 -12.61289 -12.34269 -12.17303 -11.97554 -11.81838 -11.76082 -11.48657 -11.30980 -11.06858 -11.04169 -10.84141 -10.62707 -10.51059 -10.28893 -10.14014 -9.52834 -9.47839 -8.87418 -8.17072 -7.36263 -6.48554 -4.08029 1.76047 2.18582 2.20567 2.33860 3.04216 3.11808 3.14803 3.16534 3.94528 4.40764 4.48918 4.56450 4.76046 4.91647 5.05197 5.10039 5.18711 5.19400 5.32529 5.42232 5.51733 5.59263 5.66406 5.76878 5.77986 5.86988 5.89665 5.99280 6.03145 6.15284 6.18139 6.30553 6.52482 6.55260 6.60876 6.89155 6.99031 7.08003 7.12719 7.32133 7.58692 7.94855 8.16531 8.96453 9.62336 10.68822 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014614 B = 0.005332 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.477867 B = 5250.004648 C = 6635.161427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.158 4.158 3 C -0.017 4.017 4 C -0.141 4.141 5 C -0.104 4.104 6 C -0.152 4.152 7 C 0.463 3.537 8 O -0.479 6.479 9 O -0.292 6.292 10 C 0.118 3.882 11 C -0.212 4.212 12 C -0.065 4.065 13 C -0.187 4.187 14 C 0.164 3.836 15 O -0.170 6.170 16 C -0.393 4.393 17 H 0.090 0.910 18 C 0.043 3.957 19 N -0.860 5.860 20 Si 0.939 3.061 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.269 1.269 24 C -0.231 4.231 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.272 0.728 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.224 -9.514 6.332 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C -0.019 4.019 4 C -0.198 4.198 5 C -0.141 4.141 6 C -0.209 4.209 7 C 0.305 3.695 8 O -0.362 6.362 9 O -0.207 6.207 10 C 0.078 3.922 11 C -0.232 4.232 12 C -0.083 4.083 13 C -0.206 4.206 14 C 0.109 3.891 15 O -0.073 6.073 16 C -0.469 4.469 17 H 0.107 0.893 18 C -0.162 4.162 19 N -0.494 5.494 20 Si 0.763 3.237 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.251 4.251 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.143 0.857 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.082 0.918 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.808 -8.993 5.841 18.283 hybrid contribution -0.232 -0.680 -0.693 0.998 sum 14.576 -9.673 5.148 18.236 Atomic orbital electron populations 1.24295 0.96083 1.03227 0.97570 1.22566 0.95633 0.96237 1.03124 1.19745 0.93255 0.89776 0.99086 1.21893 0.99302 1.02939 0.95631 1.21459 0.97091 0.99849 0.95729 1.21874 0.98839 0.98137 1.02053 1.23847 0.79702 0.86133 0.79826 1.90726 1.67760 1.42781 1.34965 1.84593 1.46327 1.41276 1.48530 1.18251 0.90692 0.85711 0.97582 1.20503 1.04064 0.94056 1.04530 1.20489 0.94106 0.96366 0.97371 1.20331 1.01323 0.99187 0.99763 1.19114 0.87204 0.92166 0.90572 1.83994 1.38526 1.45584 1.39184 1.21259 1.18866 0.98746 1.08019 0.89274 1.25271 0.95289 0.98230 0.97422 1.70021 1.18258 1.27674 1.33453 0.85807 0.78557 0.79748 0.79569 1.19380 1.20083 1.19370 1.21186 0.99273 1.00867 1.03737 0.87557 0.87616 0.85666 0.90982 0.90562 0.91824 0.90739 0.90783 0.92230 0.92262 0.92188 0.86804 0.86003 0.85876 0.91842 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 13.57 29.01 0.39 -1.91 16 2 C -0.16 -1.79 8.04 -36.03 -0.29 -2.08 16 3 C -0.02 -0.22 0.71 -156.81 -0.11 -0.33 16 4 C -0.14 -1.37 8.03 37.16 0.30 -1.07 16 5 C -0.10 -1.18 4.27 -26.73 -0.11 -1.29 16 6 C -0.15 -1.22 9.30 37.16 0.35 -0.87 16 7 C 0.46 7.98 5.22 36.01 0.19 8.17 16 8 O -0.48 -10.00 15.42 -18.75 -0.29 -10.28 16 9 O -0.29 -5.30 8.04 -23.61 -0.19 -5.49 16 10 C 0.12 2.44 5.18 -39.24 -0.20 2.24 16 11 C -0.21 -3.95 9.99 -39.38 -0.39 -4.34 16 12 C -0.06 -1.18 10.03 -39.63 -0.40 -1.58 16 13 C -0.19 -4.00 9.99 -39.37 -0.39 -4.39 16 14 C 0.16 4.10 6.65 -39.13 -0.26 3.84 16 15 O -0.17 -4.94 9.76 0.07 0.00 -4.94 16 16 C -0.39 -11.28 9.49 30.88 0.29 -10.99 16 17 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 18 C 0.04 1.19 5.49 -17.52 -0.10 1.10 16 19 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 20 Si 0.94 20.99 29.55 -169.99 -5.02 15.96 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 C -0.23 -5.43 8.59 -39.25 -0.34 -5.77 16 25 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 26 H 0.11 1.73 5.26 -52.49 -0.28 1.45 16 27 H 0.13 1.07 7.00 -52.49 -0.37 0.70 16 28 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 29 H 0.08 0.55 6.43 -51.92 -0.33 0.22 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 32 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.06 0.44 6.62 -51.93 -0.34 0.10 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 36 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.13 3.15 5.64 -52.49 -0.30 2.86 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -32.57 336.03 -5.92 -38.48 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.16 Total: 5.10 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -1.08 Total: -19.27 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: 0.76 Total: -24.62 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.48 Total: -20.72 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.57 -5.92 -38.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.617 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds