Wall clock time and date at job start Tue Mar 31 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99853 * 2 1 4 4 C 1.52995 * 109.47164 * 239.99812 * 3 2 1 5 5 C 1.53004 * 109.46910 * 120.00059 * 3 2 1 6 6 C 1.53001 * 109.47055 * 59.99830 * 5 3 2 7 7 C 1.50701 * 109.47719 * 0.02562 * 3 2 1 8 8 O 1.20819 * 120.00633 * 119.99315 * 7 3 2 9 9 O 1.34273 * 119.99428 * 300.00039 * 7 3 2 10 10 C 1.35920 * 116.99725 * 175.17972 * 9 7 3 11 11 C 1.38831 * 120.02092 * 245.93276 * 10 9 7 12 12 C 1.38181 * 120.08358 * 180.02562 * 11 10 9 13 13 C 1.38162 * 120.12367 * 359.97438 * 12 11 10 14 14 C 1.38893 * 120.03798 * 359.97438 * 13 12 11 15 15 O 1.35756 * 120.03869 * 180.02562 * 14 13 12 16 16 C 1.34824 * 117.00178 * 185.90353 * 15 14 13 17 17 H 1.08006 * 120.00088 * 5.54641 * 16 15 14 18 18 C 1.38654 * 120.00385 * 185.54788 * 16 15 14 19 19 N 1.31562 * 119.99569 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00206 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47386 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46852 * 119.99866 * 20 18 16 23 23 H 1.48495 * 109.47039 * 239.99769 * 20 18 16 24 24 C 1.38573 * 120.02263 * 65.95321 * 10 9 7 25 25 H 1.07994 * 120.00292 * 179.97438 * 1 2 3 26 26 H 1.08008 * 119.99755 * 0.02562 * 1 2 3 27 27 H 1.07994 * 119.99664 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47383 * 180.02562 * 4 3 2 29 29 H 1.09007 * 109.47397 * 300.00058 * 4 3 2 30 30 H 1.08998 * 109.46939 * 60.00674 * 4 3 2 31 31 H 1.08996 * 109.47379 * 179.97438 * 5 3 2 32 32 H 1.09004 * 109.47013 * 300.00046 * 5 3 2 33 33 H 1.08996 * 109.47122 * 59.99916 * 6 5 3 34 34 H 1.09002 * 109.46897 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.46802 * 299.99967 * 6 5 3 36 36 H 1.07999 * 119.95411 * 0.04210 * 11 10 9 37 37 H 1.08002 * 119.94013 * 180.02562 * 12 11 10 38 38 H 1.08003 * 119.97809 * 180.02562 * 13 12 11 39 39 H 0.96998 * 119.99820 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.06082 * 359.70109 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 -1.2492 5 6 2.9431 1.3861 1.2493 6 6 3.9373 0.2231 1.2493 7 6 1.0843 2.4506 0.0006 8 8 1.0896 3.2495 0.9070 9 8 0.2057 2.5833 -1.0061 10 6 -0.7146 3.5773 -0.8949 11 6 -2.0611 3.2657 -0.7640 12 6 -2.9979 4.2753 -0.6515 13 6 -2.5977 5.5976 -0.6683 14 6 -1.2517 5.9150 -0.7980 15 8 -0.8585 7.2143 -0.8140 16 6 0.4439 7.4565 -1.0648 17 1 1.1033 6.6432 -1.3297 18 6 0.9369 8.7499 -0.9827 19 7 0.1337 9.7407 -0.6604 20 14 2.7415 9.0854 -1.3295 21 1 3.4257 7.8117 -1.6679 22 1 2.8591 10.0283 -2.4708 23 1 3.3739 9.6831 -0.1263 24 6 -0.3094 4.9024 -0.9126 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.4885 2.3300 -1.2490 29 1 3.6515 0.5576 -1.2492 30 1 2.3165 1.3285 -2.1391 31 1 3.4885 2.3298 1.2491 32 1 2.3164 1.3283 2.1393 33 1 4.5640 0.2809 0.3593 34 1 4.5637 0.2806 2.1395 35 1 3.3922 -0.7208 1.2492 36 1 -2.3768 2.2330 -0.7499 37 1 -4.0448 4.0303 -0.5493 38 1 -3.3318 6.3848 -0.5797 39 1 0.4786 10.6455 -0.6026 40 1 0.7381 5.1466 -1.0099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343740.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:30 Heat of formation + Delta-G solvation = -61.465142 kcal Electronic energy + Delta-G solvation = -23291.578899 eV Core-core repulsion = 19845.350426 eV Total energy + Delta-G solvation = -3446.228473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29163 -39.01806 -37.76131 -36.44715 -35.73103 -32.32371 -32.26549 -30.00061 -29.43105 -28.84869 -25.70899 -25.37977 -23.61170 -21.95723 -21.76257 -20.97477 -18.96135 -18.30509 -17.62558 -16.87856 -16.27985 -16.08683 -15.19221 -14.92307 -14.70252 -14.37603 -14.23262 -13.83441 -13.63796 -13.54894 -13.14241 -12.87964 -12.53222 -12.33879 -12.21522 -12.00856 -11.80965 -11.75604 -11.58447 -11.26188 -11.05923 -11.02362 -10.87288 -10.65308 -10.46195 -10.27026 -10.14985 -9.54895 -9.52404 -8.87614 -8.13460 -7.35213 -6.48609 -4.07483 1.77455 2.11025 2.21160 2.35630 3.02354 3.11967 3.13360 3.18544 3.94550 4.42080 4.46472 4.55668 4.75770 4.90996 5.06386 5.08639 5.16443 5.18492 5.31726 5.44195 5.53381 5.58522 5.68738 5.78037 5.79457 5.82449 5.88884 6.00529 6.04498 6.15073 6.18947 6.29704 6.42712 6.53411 6.57854 6.89472 7.01753 7.08796 7.13970 7.32756 7.60002 7.95222 8.16217 8.96751 9.63197 10.69039 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.005259 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.760579 B = 5322.922967 C = 6826.359190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C -0.018 4.018 4 C -0.143 4.143 5 C -0.104 4.104 6 C -0.152 4.152 7 C 0.461 3.539 8 O -0.476 6.476 9 O -0.291 6.291 10 C 0.117 3.883 11 C -0.213 4.213 12 C -0.064 4.064 13 C -0.189 4.189 14 C 0.164 3.836 15 O -0.170 6.170 16 C -0.391 4.391 17 H 0.090 0.910 18 C 0.041 3.959 19 N -0.859 5.859 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.230 4.230 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.126 0.874 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.271 0.729 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 -18.808 0.256 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.169 4.169 3 C -0.019 4.019 4 C -0.200 4.200 5 C -0.142 4.142 6 C -0.209 4.209 7 C 0.303 3.697 8 O -0.359 6.359 9 O -0.206 6.206 10 C 0.077 3.923 11 C -0.233 4.233 12 C -0.083 4.083 13 C -0.209 4.209 14 C 0.109 3.891 15 O -0.073 6.073 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.163 4.163 19 N -0.494 5.494 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.250 4.250 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.144 0.856 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.055 -18.039 0.606 18.499 hybrid contribution 0.882 0.264 -0.130 0.930 sum 4.936 -17.775 0.476 18.454 Atomic orbital electron populations 1.24255 0.96123 1.02969 0.98472 1.22599 0.95686 0.96318 1.02292 1.19739 0.93326 0.89602 0.99239 1.21913 0.99350 1.03169 0.95557 1.21465 0.97106 1.00062 0.95518 1.21874 0.98875 0.97988 1.02169 1.23826 0.80294 0.85906 0.79636 1.90739 1.68146 1.41882 1.35176 1.84598 1.40686 1.50457 1.44853 1.18299 0.87196 0.85706 1.01148 1.20407 0.91059 0.99163 1.12623 1.20478 0.98253 0.91512 0.98014 1.20317 0.93503 0.96473 1.10573 1.19147 0.92470 0.85115 0.92333 1.84010 1.28391 1.18401 1.76534 1.21352 0.82840 0.94637 1.47852 0.89214 1.25289 1.00257 0.94346 0.96445 1.70045 1.35326 1.00134 1.43869 0.85651 0.80432 0.78987 0.78429 1.19106 1.19975 1.19974 1.21221 1.01043 0.91337 1.11392 0.87684 0.87662 0.85646 0.91589 0.90557 0.90933 0.90587 0.90851 0.92106 0.92235 0.92320 0.86697 0.85971 0.85910 0.91955 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 13.57 29.01 0.39 -1.67 16 2 C -0.15 -1.59 8.04 -36.03 -0.29 -1.88 16 3 C -0.02 -0.22 0.71 -156.81 -0.11 -0.34 16 4 C -0.14 -1.52 8.04 37.16 0.30 -1.22 16 5 C -0.10 -1.19 4.27 -26.73 -0.11 -1.31 16 6 C -0.15 -1.23 9.30 37.16 0.35 -0.88 16 7 C 0.46 8.01 5.17 36.01 0.19 8.20 16 8 O -0.48 -10.03 15.05 -18.74 -0.28 -10.31 16 9 O -0.29 -5.29 8.06 -23.63 -0.19 -5.48 16 10 C 0.12 2.42 5.46 -39.24 -0.21 2.21 16 11 C -0.21 -3.92 9.92 -39.38 -0.39 -4.31 16 12 C -0.06 -1.16 10.03 -39.63 -0.40 -1.56 16 13 C -0.19 -4.05 9.99 -39.37 -0.39 -4.45 16 14 C 0.16 4.12 6.64 -39.13 -0.26 3.86 16 15 O -0.17 -4.98 9.76 0.05 0.00 -4.98 16 16 C -0.39 -11.28 9.44 30.89 0.29 -10.99 16 17 H 0.09 2.47 5.30 -52.48 -0.28 2.19 16 18 C 0.04 1.16 5.49 -17.51 -0.10 1.06 16 19 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 20 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 24 C -0.23 -5.48 7.99 -39.25 -0.31 -5.79 16 25 H 0.10 0.93 8.06 -52.49 -0.42 0.51 16 26 H 0.11 1.48 5.09 -52.48 -0.27 1.21 16 27 H 0.13 0.98 7.00 -52.49 -0.37 0.61 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.60 6.43 -51.92 -0.33 0.27 16 30 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 31 H 0.08 0.96 8.10 -51.93 -0.42 0.53 16 32 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.41 6.62 -51.93 -0.34 0.07 16 36 H 0.12 1.77 7.95 -52.49 -0.42 1.35 16 37 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.13 3.25 5.72 -52.49 -0.30 2.95 16 LS Contribution 335.08 15.07 5.05 5.05 Total: -1.00 -32.74 335.08 -5.90 -38.64 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.15 Total: 4.80 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -1.07 Total: -19.06 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.76 Total: -24.70 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.47 Total: -20.77 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.74 -5.90 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343740.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.822 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds