Wall clock time and date at job start Tue Mar 31 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99853 * 2 1 4 4 C 1.52995 * 109.47164 * 239.99812 * 3 2 1 5 5 C 1.53004 * 109.46910 * 120.00059 * 3 2 1 6 6 C 1.53001 * 109.47055 * 59.99830 * 5 3 2 7 7 C 1.50701 * 109.47719 * 0.02562 * 3 2 1 8 8 O 1.20819 * 120.00633 * 119.99315 * 7 3 2 9 9 O 1.34273 * 119.99428 * 300.00039 * 7 3 2 10 10 C 1.35920 * 116.99725 * 175.17972 * 9 7 3 11 11 C 1.38831 * 120.02092 * 245.93276 * 10 9 7 12 12 C 1.38181 * 120.08358 * 180.02562 * 11 10 9 13 13 C 1.38162 * 120.12367 * 359.97438 * 12 11 10 14 14 C 1.38893 * 120.03798 * 359.97438 * 13 12 11 15 15 O 1.35756 * 120.03869 * 180.02562 * 14 13 12 16 16 C 1.34824 * 117.00178 * 185.90353 * 15 14 13 17 17 H 1.08006 * 120.00088 * 5.54641 * 16 15 14 18 18 C 1.38654 * 120.00385 * 185.54788 * 16 15 14 19 19 N 1.31562 * 119.99569 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00206 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47386 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46852 * 119.99866 * 20 18 16 23 23 H 1.48495 * 109.47039 * 239.99769 * 20 18 16 24 24 C 1.38573 * 120.02263 * 65.95321 * 10 9 7 25 25 H 1.07994 * 120.00292 * 179.97438 * 1 2 3 26 26 H 1.08008 * 119.99755 * 0.02562 * 1 2 3 27 27 H 1.07994 * 119.99664 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47383 * 180.02562 * 4 3 2 29 29 H 1.09007 * 109.47397 * 300.00058 * 4 3 2 30 30 H 1.08998 * 109.46939 * 60.00674 * 4 3 2 31 31 H 1.08996 * 109.47379 * 179.97438 * 5 3 2 32 32 H 1.09004 * 109.47013 * 300.00046 * 5 3 2 33 33 H 1.08996 * 109.47122 * 59.99916 * 6 5 3 34 34 H 1.09002 * 109.46897 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.46802 * 299.99967 * 6 5 3 36 36 H 1.07999 * 119.95411 * 0.04210 * 11 10 9 37 37 H 1.08002 * 119.94013 * 180.02562 * 12 11 10 38 38 H 1.08003 * 119.97809 * 180.02562 * 13 12 11 39 39 H 0.96998 * 119.99820 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.06082 * 359.70109 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 -1.2492 5 6 2.9431 1.3861 1.2493 6 6 3.9373 0.2231 1.2493 7 6 1.0843 2.4506 0.0006 8 8 1.0896 3.2495 0.9070 9 8 0.2057 2.5833 -1.0061 10 6 -0.7146 3.5773 -0.8949 11 6 -2.0611 3.2657 -0.7640 12 6 -2.9979 4.2753 -0.6515 13 6 -2.5977 5.5976 -0.6683 14 6 -1.2517 5.9150 -0.7980 15 8 -0.8585 7.2143 -0.8140 16 6 0.4439 7.4565 -1.0648 17 1 1.1033 6.6432 -1.3297 18 6 0.9369 8.7499 -0.9827 19 7 0.1337 9.7407 -0.6604 20 14 2.7415 9.0854 -1.3295 21 1 3.4257 7.8117 -1.6679 22 1 2.8591 10.0283 -2.4708 23 1 3.3739 9.6831 -0.1263 24 6 -0.3094 4.9024 -0.9126 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.4885 2.3300 -1.2490 29 1 3.6515 0.5576 -1.2492 30 1 2.3165 1.3285 -2.1391 31 1 3.4885 2.3298 1.2491 32 1 2.3164 1.3283 2.1393 33 1 4.5640 0.2809 0.3593 34 1 4.5637 0.2806 2.1395 35 1 3.3922 -0.7208 1.2492 36 1 -2.3768 2.2330 -0.7499 37 1 -4.0448 4.0303 -0.5493 38 1 -3.3318 6.3848 -0.5797 39 1 0.4786 10.6455 -0.6026 40 1 0.7381 5.1466 -1.0099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343740.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:30 Heat of formation + Delta-G solvation = -80.523585 kcal Electronic energy + Delta-G solvation = -23292.405335 eV Core-core repulsion = 19845.350426 eV Total energy + Delta-G solvation = -3447.054909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.73551 -40.74907 -39.21103 -37.79927 -37.41043 -34.38450 -33.10774 -31.47102 -30.83332 -30.28035 -27.53633 -26.63063 -24.95979 -23.49951 -22.82562 -22.50379 -20.29100 -20.10618 -19.34919 -18.23073 -17.88812 -17.31307 -16.92126 -16.40040 -16.15659 -15.79322 -15.64958 -15.41178 -15.08328 -14.72651 -14.69669 -14.39457 -13.80450 -13.72223 -13.36496 -13.16033 -13.09047 -12.97152 -12.75541 -12.73398 -12.61894 -12.58127 -12.20048 -11.98254 -11.85009 -11.68412 -11.47257 -11.35956 -10.89437 -10.38555 -9.81939 -9.19352 -8.57388 -6.26573 0.10912 0.50934 0.96143 1.26440 1.28340 1.34953 1.44810 1.64056 2.09320 2.68191 3.01875 3.29711 3.39614 3.57680 3.79206 3.87953 3.95845 4.13047 4.27639 4.32884 4.38647 4.47696 4.49950 4.64788 4.65482 4.78738 4.88461 4.90873 4.96764 5.01252 5.06029 5.12086 5.24890 5.28703 5.40557 5.45017 5.46464 5.50537 5.59099 5.73584 5.89928 5.95738 6.66198 6.86403 7.61524 8.65286 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.005259 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.760579 B = 5322.922967 C = 6826.359190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C -0.017 4.017 4 C -0.142 4.142 5 C -0.104 4.104 6 C -0.145 4.145 7 C 0.458 3.542 8 O -0.523 6.523 9 O -0.284 6.284 10 C 0.109 3.891 11 C -0.190 4.190 12 C -0.046 4.046 13 C -0.196 4.196 14 C 0.126 3.874 15 O -0.220 6.220 16 C -0.417 4.417 17 H 0.087 0.913 18 C -0.015 4.015 19 N -0.911 5.911 20 Si 1.014 2.986 21 H -0.260 1.260 22 H -0.258 1.258 23 H -0.264 1.264 24 C -0.250 4.250 25 H 0.135 0.865 26 H 0.074 0.926 27 H 0.167 0.833 28 H 0.051 0.949 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.159 0.841 37 H 0.178 0.822 38 H 0.132 0.868 39 H 0.276 0.724 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 -22.912 -0.155 23.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.160 4.160 3 C -0.018 4.018 4 C -0.199 4.199 5 C -0.142 4.142 6 C -0.202 4.202 7 C 0.303 3.697 8 O -0.409 6.409 9 O -0.199 6.199 10 C 0.068 3.932 11 C -0.209 4.209 12 C -0.063 4.063 13 C -0.215 4.215 14 C 0.075 3.925 15 O -0.127 6.127 16 C -0.493 4.493 17 H 0.105 0.895 18 C -0.214 4.214 19 N -0.549 5.549 20 Si 0.833 3.167 21 H -0.184 1.184 22 H -0.182 1.182 23 H -0.189 1.189 24 C -0.270 4.270 25 H 0.153 0.847 26 H 0.093 0.907 27 H 0.184 0.816 28 H 0.070 0.930 29 H 0.133 0.867 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.177 0.823 37 H 0.196 0.804 38 H 0.150 0.850 39 H 0.085 0.915 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.363 -22.204 0.182 22.629 hybrid contribution 0.598 1.250 0.037 1.386 sum 4.961 -20.954 0.219 21.534 Atomic orbital electron populations 1.24332 0.96544 1.02914 0.99332 1.22824 0.95556 0.96217 1.01422 1.20022 0.92571 0.88594 1.00578 1.21977 0.99550 1.04098 0.94261 1.21488 0.97376 1.00898 0.94415 1.21866 0.98197 0.96863 1.03252 1.25089 0.79871 0.86454 0.78334 1.90721 1.69341 1.43949 1.36897 1.84639 1.40649 1.49154 1.45491 1.18540 0.89013 0.85053 1.00606 1.21023 0.89699 1.01553 1.08587 1.21098 1.00914 0.89471 0.94860 1.20712 0.92032 0.98702 1.10089 1.19747 0.94424 0.84374 0.93919 1.83959 1.28570 1.20635 1.79497 1.21680 0.83256 0.95292 1.49084 0.89534 1.26534 1.05446 0.93580 0.95836 1.70159 1.37812 1.00755 1.46152 0.84609 0.73872 0.79189 0.79006 1.18429 1.18186 1.18865 1.21165 0.99675 0.92993 1.13127 0.84717 0.90733 0.81599 0.93002 0.86703 0.91265 0.92775 0.92399 0.90696 0.91593 0.90370 0.82346 0.80427 0.85033 0.91456 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.80 13.57 67.78 0.92 -2.88 16 2 C -0.14 -2.50 8.04 25.64 0.21 -2.29 16 3 C -0.02 -0.39 0.71 -53.68 -0.04 -0.43 16 4 C -0.14 -2.75 8.04 71.98 0.58 -2.17 16 5 C -0.10 -2.29 4.27 30.60 0.13 -2.16 16 6 C -0.14 -1.86 9.30 71.98 0.67 -1.19 16 7 C 0.46 16.12 5.17 71.24 0.37 16.48 16 8 O -0.52 -23.14 15.05 21.98 0.33 -22.81 16 9 O -0.28 -10.33 8.06 4.50 0.04 -10.29 16 10 C 0.11 4.52 5.46 22.49 0.12 4.65 16 11 C -0.19 -6.46 9.92 22.40 0.22 -6.23 16 12 C -0.05 -1.51 10.03 22.24 0.22 -1.29 16 13 C -0.20 -8.43 9.99 22.41 0.22 -8.21 16 14 C 0.13 6.73 6.64 22.56 0.15 6.88 16 15 O -0.22 -13.90 9.76 -22.74 -0.22 -14.12 16 16 C -0.42 -25.90 9.44 67.92 0.64 -25.26 16 17 H 0.09 5.19 5.30 -2.91 -0.02 5.18 16 18 C -0.02 -0.91 5.49 84.83 0.47 -0.44 16 19 N -0.91 -57.03 13.67 21.61 0.30 -56.74 16 20 Si 1.01 45.01 29.55 68.60 2.03 47.04 16 21 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 24 C -0.25 -12.57 7.99 22.48 0.18 -12.39 16 25 H 0.13 1.80 8.06 -2.91 -0.02 1.77 16 26 H 0.07 1.93 5.09 -2.91 -0.01 1.92 16 27 H 0.17 1.62 7.00 -2.91 -0.02 1.60 16 28 H 0.05 1.14 8.14 -2.38 -0.02 1.13 16 29 H 0.11 1.34 6.43 -2.38 -0.02 1.33 16 30 H 0.07 1.39 8.12 -2.39 -0.02 1.37 16 31 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 32 H 0.06 1.43 8.10 -2.38 -0.02 1.41 16 33 H 0.07 0.77 6.43 -2.39 -0.02 0.76 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.73 6.62 -2.38 -0.02 0.71 16 36 H 0.16 4.08 7.95 -2.91 -0.02 4.06 16 37 H 0.18 3.99 8.06 -2.91 -0.02 3.96 16 38 H 0.13 5.33 8.06 -2.91 -0.02 5.30 16 39 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.10 5.65 5.72 -2.91 -0.02 5.63 16 Total: -1.00 -79.98 335.08 8.58 -71.41 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 1.05 Total: 22.47 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 5.06 Total: -36.95 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.30 Total: -56.74 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: 0.15 Total: -47.22 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -79.98 8.58 -71.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343740.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.117 kcal (2) G-P(sol) polarization free energy of solvation -79.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds