Wall clock time and date at job start Tue Mar 31 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46718 * 2 1 4 4 C 1.50694 * 109.46846 * 119.99770 * 2 1 3 5 5 O 1.20830 * 120.00130 * 120.00156 * 4 2 1 6 6 O 1.34265 * 120.00248 * 299.99486 * 4 2 1 7 7 C 1.35925 * 117.00183 * 175.01619 * 6 4 2 8 8 C 1.38832 * 120.02144 * 255.32019 * 7 6 4 9 9 C 1.38182 * 120.08205 * 179.97438 * 8 7 6 10 10 C 1.38152 * 120.12327 * 359.77956 * 9 8 7 11 11 C 1.38895 * 120.04538 * 0.47681 * 10 9 8 12 12 O 1.35746 * 120.04814 * 179.78543 * 11 10 9 13 13 C 1.34831 * 117.00352 * 174.12132 * 12 11 10 14 14 H 1.07999 * 119.99935 * 5.06216 * 13 12 11 15 15 C 1.38651 * 120.00190 * 185.05933 * 13 12 11 16 16 N 1.31555 * 119.99602 * 0.02562 * 15 13 12 17 17 Si 1.86790 * 120.00094 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47309 * 90.00274 * 17 15 13 19 19 H 1.48505 * 109.47414 * 210.00471 * 17 15 13 20 20 H 1.48499 * 109.47467 * 330.00394 * 17 15 13 21 21 C 1.38564 * 120.02232 * 75.29345 * 7 6 4 22 22 C 1.52999 * 109.46686 * 239.99923 * 2 1 3 23 23 C 1.53778 * 113.60999 * 157.49763 * 22 2 1 24 24 C 1.53781 * 87.08235 * 220.01467 * 23 22 2 25 25 C 1.53780 * 87.07846 * 25.43530 * 24 23 22 26 26 H 1.09008 * 109.47052 * 300.00223 * 1 2 3 27 27 H 1.08999 * 109.47148 * 60.00059 * 1 2 3 28 28 H 1.08998 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.95608 * 359.97085 * 8 7 6 30 30 H 1.08004 * 119.93894 * 180.02562 * 9 8 7 31 31 H 1.08008 * 119.98143 * 180.23446 * 10 9 8 32 32 H 0.97002 * 119.99936 * 179.97438 * 16 15 13 33 33 H 1.08000 * 120.05973 * 0.05186 * 21 7 6 34 34 H 1.08998 * 112.84977 * 288.79762 * 22 2 1 35 35 H 1.09002 * 113.61901 * 334.56980 * 23 22 2 36 36 H 1.09004 * 113.61635 * 105.46474 * 23 22 2 37 37 H 1.09000 * 113.61512 * 270.88764 * 24 23 22 38 38 H 1.09002 * 113.69033 * 139.99195 * 24 23 22 39 39 H 1.09000 * 113.61222 * 220.02398 * 25 24 23 40 40 H 1.08998 * 113.61742 * 89.11629 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7269 -1.6928 1.1197 6 8 1.7080 -0.2516 2.4499 7 6 2.1056 -0.9962 3.5153 8 6 1.1819 -1.7686 4.2063 9 6 1.5849 -2.5265 5.2892 10 6 2.9086 -2.5216 5.6848 11 6 3.8360 -1.7466 5.0005 12 8 5.1358 -1.7383 5.3919 13 6 6.0053 -1.0629 4.6136 14 1 5.6447 -0.4925 3.7704 15 6 7.3622 -1.1006 4.8957 16 7 7.8015 -1.7958 5.9225 17 14 8.5666 -0.1642 3.8178 18 1 8.7463 1.2090 4.3536 19 1 9.8745 -0.8677 3.8102 20 1 8.0367 -0.0896 2.4326 21 6 3.4332 -0.9852 3.9120 22 6 2.0399 -0.7213 -1.2493 23 6 3.4725 -0.3277 -1.6461 24 6 2.9921 -0.3574 -3.1066 25 6 1.5811 -0.0723 -2.5657 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.1471 -1.7772 3.8971 30 1 0.8645 -3.1269 5.8249 31 1 3.2217 -3.1178 6.5293 32 1 8.7509 -1.8224 6.1197 33 1 4.1531 -0.3846 3.3758 34 1 1.8758 -1.7982 -1.2128 35 1 3.7639 0.6648 -1.3023 36 1 4.2151 -1.0915 -1.4151 37 1 3.0896 -1.3351 -3.5785 38 1 3.3969 0.4497 -3.7173 39 1 0.7966 -0.6301 -3.0771 40 1 1.3552 0.9900 -2.4734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:33 Heat of formation + Delta-G solvation = -85.131591 kcal Electronic energy + Delta-G solvation = -22914.654753 eV Core-core repulsion = 19467.400026 eV Total energy + Delta-G solvation = -3447.254727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.46748 -40.76853 -39.91665 -38.43783 -37.33483 -34.39679 -34.13225 -31.35530 -30.65135 -27.54529 -27.17979 -26.20044 -25.62242 -23.58492 -23.14372 -21.56155 -20.36462 -20.13837 -19.49975 -18.37548 -17.72134 -17.42438 -16.90738 -16.31561 -16.18550 -16.06313 -15.77255 -15.63440 -15.05089 -14.74287 -14.50565 -14.08829 -13.73515 -13.57602 -13.43015 -13.19333 -13.08962 -13.02897 -12.79421 -12.58816 -12.53367 -12.24342 -12.22011 -11.92667 -11.68066 -11.50162 -11.42494 -11.16860 -11.09198 -10.88622 -9.83067 -9.19169 -8.56578 -6.26022 0.12335 0.51581 1.05205 1.26913 1.36042 1.44479 1.73672 2.09985 2.69853 3.02008 3.33463 3.43471 3.60479 3.63656 3.84648 3.95303 3.96300 4.14388 4.22852 4.25586 4.28942 4.34219 4.50820 4.72557 4.82665 4.84458 4.86749 4.91049 4.92054 4.97944 4.99212 5.08699 5.13440 5.29655 5.32756 5.34764 5.41464 5.48544 5.52596 5.58933 5.90595 5.97862 6.74637 6.87148 7.62147 8.65814 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013154 B = 0.005083 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.049296 B = 5506.787385 C = 7325.090026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 H 0.127 0.873 4 C 0.451 3.549 5 O -0.524 6.524 6 O -0.294 6.294 7 C 0.113 3.887 8 C -0.192 4.192 9 C -0.047 4.047 10 C -0.196 4.196 11 C 0.127 3.873 12 O -0.220 6.220 13 C -0.419 4.419 14 H 0.089 0.911 15 C -0.015 4.015 16 N -0.912 5.912 17 Si 1.014 2.986 18 H -0.256 1.256 19 H -0.263 1.263 20 H -0.263 1.263 21 C -0.250 4.250 22 C -0.102 4.102 23 C -0.154 4.154 24 C -0.136 4.136 25 C -0.112 4.112 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.158 0.842 30 H 0.177 0.823 31 H 0.131 0.869 32 H 0.276 0.724 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.266 5.553 -15.852 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 H 0.145 0.855 4 C 0.296 3.704 5 O -0.410 6.410 6 O -0.210 6.210 7 C 0.072 3.928 8 C -0.211 4.211 9 C -0.065 4.065 10 C -0.215 4.215 11 C 0.076 3.924 12 O -0.127 6.127 13 C -0.495 4.495 14 H 0.106 0.894 15 C -0.213 4.213 16 N -0.549 5.549 17 Si 0.832 3.168 18 H -0.180 1.180 19 H -0.187 1.187 20 H -0.187 1.187 21 C -0.270 4.270 22 C -0.121 4.121 23 C -0.192 4.192 24 C -0.173 4.173 25 C -0.149 4.149 26 H 0.091 0.909 27 H 0.123 0.877 28 H 0.076 0.924 29 H 0.175 0.825 30 H 0.194 0.806 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.726 5.092 -15.578 22.714 hybrid contribution 1.408 0.053 0.165 1.418 sum -14.318 5.145 -15.413 21.657 Atomic orbital electron populations 1.21795 0.89359 1.03387 1.05008 1.21371 1.00080 1.00636 0.86099 0.85542 1.25313 0.76897 0.83170 0.84989 1.90708 1.35698 1.27749 1.86827 1.84545 1.72311 1.49988 1.14116 1.18454 0.91944 0.94467 0.87961 1.21109 1.00242 0.99810 0.99889 1.21088 0.93983 0.96507 0.94899 1.20717 0.93292 1.03662 1.03797 1.19712 0.85914 0.93898 0.92875 1.83949 1.13615 1.66857 1.48246 1.21665 0.87607 1.29134 1.11081 0.89404 1.26517 0.98016 0.98143 0.98645 1.70151 1.16157 1.40267 1.28320 0.84676 0.76549 0.78123 0.77414 1.18028 1.18689 1.18738 1.21178 0.96378 1.06939 1.02497 1.22540 0.96816 0.99849 0.92893 1.23086 0.96372 1.01263 0.98463 1.22779 0.97093 1.02558 0.94878 1.22911 0.96961 1.02067 0.92931 0.90931 0.87710 0.92374 0.82460 0.80570 0.85084 0.91460 0.87491 0.90110 0.89820 0.94132 0.90250 0.89976 0.89582 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.93 71.98 0.64 -1.37 16 2 C -0.06 -1.33 2.58 -11.54 -0.03 -1.36 16 3 H 0.13 2.23 7.94 -2.38 -0.02 2.21 16 4 C 0.45 15.07 7.11 71.23 0.51 15.58 16 5 O -0.52 -22.11 15.27 21.95 0.34 -21.77 16 6 O -0.29 -10.49 9.93 4.52 0.04 -10.44 16 7 C 0.11 4.65 5.18 22.49 0.12 4.76 16 8 C -0.19 -6.54 9.99 22.40 0.22 -6.32 16 9 C -0.05 -1.57 10.03 22.24 0.22 -1.34 16 10 C -0.20 -8.41 9.99 22.41 0.22 -8.19 16 11 C 0.13 6.72 6.65 22.56 0.15 6.87 16 12 O -0.22 -13.82 9.76 -22.71 -0.22 -14.05 16 13 C -0.42 -25.88 9.49 67.92 0.64 -25.23 16 14 H 0.09 5.22 5.20 -2.91 -0.02 5.21 16 15 C -0.01 -0.86 5.49 84.83 0.47 -0.39 16 16 N -0.91 -56.86 13.67 21.61 0.30 -56.56 16 17 Si 1.01 44.85 29.55 68.60 2.03 46.88 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 21 C -0.25 -12.45 8.58 22.49 0.19 -12.25 16 22 C -0.10 -2.11 2.54 -10.27 -0.03 -2.13 16 23 C -0.15 -3.49 7.60 31.12 0.24 -3.25 16 24 C -0.14 -2.13 8.08 31.12 0.25 -1.88 16 25 C -0.11 -1.41 6.68 31.12 0.21 -1.20 16 26 H 0.07 1.06 8.11 -2.38 -0.02 1.04 16 27 H 0.10 0.89 7.45 -2.39 -0.02 0.87 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.18 4.01 8.06 -2.91 -0.02 3.98 16 31 H 0.13 5.32 8.06 -2.91 -0.02 5.30 16 32 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.11 5.70 5.64 -2.91 -0.02 5.68 16 34 H 0.08 1.98 7.86 -2.39 -0.02 1.96 16 35 H 0.08 1.79 7.96 -2.39 -0.02 1.77 16 36 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 0.94 8.10 -2.39 -0.02 0.92 16 Total: -1.00 -78.85 339.88 7.55 -71.30 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 1.04 Total: 22.36 kcal Atomic # 6 Polarization: -41.74 SS G_CDS: 4.03 Total: -37.71 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.30 Total: -56.56 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: 0.16 Total: -46.26 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -78.85 7.55 -71.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.830 kcal (2) G-P(sol) polarization free energy of solvation -78.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds