Wall clock time and date at job start Tue Mar 31 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47102 * 2 1 4 4 C 1.50704 * 109.46879 * 240.00409 * 2 1 3 5 5 O 1.20826 * 119.99626 * 240.00319 * 4 2 1 6 6 O 1.34258 * 120.00268 * 60.00055 * 4 2 1 7 7 C 1.35926 * 117.00151 * 175.01335 * 6 4 2 8 8 C 1.38827 * 120.01639 * 255.02118 * 7 6 4 9 9 C 1.38194 * 120.07503 * 179.72270 * 8 7 6 10 10 C 1.38150 * 120.12586 * 0.54725 * 9 8 7 11 11 C 1.38899 * 120.04146 * 359.72728 * 10 9 8 12 12 O 1.35746 * 120.03955 * 179.97438 * 11 10 9 13 13 C 1.34836 * 116.99620 * 185.62175 * 12 11 10 14 14 H 1.07995 * 120.00366 * 354.93642 * 13 12 11 15 15 C 1.38654 * 119.99911 * 174.94547 * 13 12 11 16 16 N 1.31559 * 119.99959 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00031 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47080 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47033 * 119.99672 * 17 15 13 20 20 H 1.48498 * 109.47047 * 239.99450 * 17 15 13 21 21 C 1.38566 * 120.02144 * 75.29270 * 7 6 4 22 22 C 1.52996 * 109.47088 * 120.00393 * 2 1 3 23 23 C 1.53783 * 113.61308 * 279.13334 * 22 2 1 24 24 C 1.53951 * 87.01930 * 220.04844 * 23 22 2 25 25 C 1.53781 * 113.61252 * 181.52799 * 22 2 1 26 26 H 1.09000 * 109.47072 * 59.99273 * 1 2 3 27 27 H 1.08998 * 109.47314 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46995 * 299.99769 * 1 2 3 29 29 H 1.07999 * 119.96326 * 359.97438 * 8 7 6 30 30 H 1.08003 * 119.93738 * 180.25618 * 9 8 7 31 31 H 1.07997 * 119.98199 * 179.69953 * 10 9 8 32 32 H 0.97005 * 120.00121 * 179.97438 * 16 15 13 33 33 H 1.08004 * 120.06014 * 359.97438 * 21 7 6 34 34 H 1.08998 * 112.85191 * 50.33082 * 22 2 1 35 35 H 1.08995 * 113.61557 * 334.56587 * 23 22 2 36 36 H 1.09005 * 113.61125 * 105.47188 * 23 22 2 37 37 H 1.08999 * 113.54142 * 270.81504 * 24 23 22 38 38 H 1.08998 * 113.74680 * 139.94477 * 24 23 22 39 39 H 1.09000 * 113.61323 * 254.52533 * 25 22 2 40 40 H 1.08996 * 113.61659 * 25.43481 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7269 -1.6928 -1.1197 6 8 1.7079 -0.2516 -2.4499 7 6 2.2775 -0.8747 -3.5153 8 6 3.3095 -0.2586 -4.2100 9 6 3.8933 -0.8935 -5.2898 10 6 3.4444 -2.1377 -5.6883 11 6 2.4083 -2.7563 -5.0004 12 8 1.9669 -3.9787 -5.3923 13 6 0.8843 -4.4712 -4.7570 14 1 0.4587 -3.9359 -3.9211 15 6 0.3176 -5.6649 -5.1768 16 7 0.8358 -6.3169 -6.1952 17 14 -1.1818 -6.3476 -4.2962 18 1 -1.5667 -5.4323 -3.1920 19 1 -2.3083 -6.4667 -5.2565 20 1 -0.8620 -7.6868 -3.7399 21 6 1.8245 -2.1227 -3.9121 22 6 2.0400 -0.7213 1.2492 23 6 2.0344 0.1558 2.5123 24 6 3.3855 -0.4901 2.8693 25 6 3.5733 -0.7444 1.3643 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.6593 0.7162 -3.9037 30 1 4.6988 -0.4139 -5.8261 31 1 3.8990 -2.6296 -6.5354 32 1 0.4395 -7.1522 -6.4887 33 1 1.0190 -2.6017 -3.3752 34 1 1.5766 -1.6973 1.3932 35 1 2.1026 1.2232 2.3030 36 1 1.2341 -0.0895 3.2107 37 1 3.2899 -1.4027 3.4576 38 1 4.1095 0.2092 3.2876 39 1 4.0136 -1.7153 1.1371 40 1 4.0629 0.0766 0.8405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343841.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:36 Heat of formation + Delta-G solvation = -66.418097 kcal Electronic energy + Delta-G solvation = -22928.536439 eV Core-core repulsion = 19482.093190 eV Total energy + Delta-G solvation = -3446.443249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.04659 -39.34113 -38.52772 -36.82756 -35.66830 -33.26569 -32.30208 -29.68126 -28.88949 -26.22921 -25.55450 -25.44466 -24.36311 -22.06207 -21.53018 -20.17845 -19.56683 -18.26494 -17.76051 -17.09001 -16.14714 -15.85097 -15.39827 -15.13420 -15.01487 -14.36208 -14.29601 -13.82135 -13.58541 -13.13072 -13.05515 -12.79660 -12.59451 -12.51286 -12.27819 -11.89127 -11.84866 -11.57343 -11.37831 -11.30297 -11.05376 -10.85064 -10.72148 -10.56199 -10.47371 -10.28246 -10.26728 -10.02251 -9.50980 -8.88172 -8.15074 -7.35056 -6.48695 -4.07936 1.78867 2.21654 2.41588 3.07212 3.12348 3.14759 3.18248 3.94198 4.34944 4.44248 4.45541 4.54580 4.73368 4.87064 5.01460 5.03987 5.13149 5.15675 5.25789 5.53897 5.55863 5.58454 5.61245 5.64004 5.73140 5.77690 5.80439 5.98193 6.00893 6.07456 6.11664 6.16982 6.34143 6.38601 6.56681 6.92227 7.02061 7.09759 7.14441 7.33513 7.61210 7.95270 8.21719 8.96593 9.63118 10.68936 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.004629 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.756487 B = 6047.119833 C = 7241.828214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 H 0.107 0.893 4 C 0.455 3.545 5 O -0.478 6.478 6 O -0.298 6.298 7 C 0.122 3.878 8 C -0.213 4.213 9 C -0.065 4.065 10 C -0.188 4.188 11 C 0.164 3.836 12 O -0.171 6.171 13 C -0.392 4.392 14 H 0.091 0.909 15 C 0.041 3.959 16 N -0.860 5.860 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.275 1.275 21 C -0.230 4.230 22 C -0.097 4.097 23 C -0.132 4.132 24 C -0.144 4.144 25 C -0.130 4.130 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.270 0.730 33 H 0.131 0.869 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 13.646 13.945 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 H 0.125 0.875 4 C 0.297 3.703 5 O -0.362 6.362 6 O -0.213 6.213 7 C 0.081 3.919 8 C -0.233 4.233 9 C -0.083 4.083 10 C -0.207 4.207 11 C 0.110 3.890 12 O -0.074 6.074 13 C -0.468 4.468 14 H 0.109 0.891 15 C -0.163 4.163 16 N -0.494 5.494 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.250 4.250 22 C -0.115 4.115 23 C -0.169 4.169 24 C -0.181 4.181 25 C -0.167 4.167 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.080 0.920 33 H 0.149 0.851 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.268 12.916 13.665 18.845 hybrid contribution -0.763 -0.424 0.350 0.941 sum 0.505 12.492 14.015 18.781 Atomic orbital electron populations 1.21768 0.91983 1.03285 1.03270 1.21098 0.98285 1.00276 0.89149 0.87531 1.24038 0.78189 0.83555 0.84528 1.90710 1.34332 1.24617 1.86514 1.84507 1.64608 1.58205 1.14022 1.18221 0.94409 0.92427 0.86846 1.20493 0.99459 1.01790 1.01517 1.20482 0.98222 0.93963 0.95657 1.20324 1.00750 0.96576 1.03081 1.19124 0.92592 0.85930 0.91376 1.83997 1.42560 1.25032 1.55816 1.21368 1.04827 1.06455 1.14187 0.89143 1.25286 0.98989 0.95602 0.96443 1.70046 1.39585 1.15603 1.24197 0.85648 0.79781 0.79102 0.78938 1.19107 1.19975 1.19998 1.21197 1.05817 0.95967 1.01986 1.22500 0.97291 0.99516 0.92183 1.22985 0.97951 0.99231 0.96771 1.22859 0.97355 1.00877 0.97052 1.22872 0.95511 1.02844 0.95497 0.91043 0.91861 0.91048 0.86841 0.86027 0.85902 0.91959 0.85128 0.88417 0.89974 0.91278 0.90218 0.91519 0.90602 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.11 37.16 0.34 -1.13 16 2 C -0.07 -0.79 2.56 -91.77 -0.23 -1.03 16 3 H 0.11 1.01 7.98 -51.93 -0.41 0.59 16 4 C 0.45 7.58 6.93 36.01 0.25 7.83 16 5 O -0.48 -9.57 14.39 -18.75 -0.27 -9.84 16 6 O -0.30 -5.43 9.93 -23.61 -0.23 -5.66 16 7 C 0.12 2.53 5.18 -39.24 -0.20 2.32 16 8 C -0.21 -3.98 9.99 -39.38 -0.39 -4.38 16 9 C -0.06 -1.19 10.03 -39.63 -0.40 -1.58 16 10 C -0.19 -4.04 9.99 -39.37 -0.39 -4.44 16 11 C 0.16 4.13 6.65 -39.13 -0.26 3.87 16 12 O -0.17 -4.99 9.76 0.04 0.00 -4.99 16 13 C -0.39 -11.27 9.49 30.89 0.29 -10.98 16 14 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 15 C 0.04 1.16 5.49 -17.51 -0.10 1.06 16 16 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 17 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C -0.23 -5.45 8.58 -39.25 -0.34 -5.79 16 22 C -0.10 -1.04 2.68 -89.81 -0.24 -1.28 16 23 C -0.13 -1.06 7.63 -25.83 -0.20 -1.26 16 24 C -0.14 -1.25 8.09 -25.83 -0.21 -1.46 16 25 C -0.13 -1.47 6.29 -25.92 -0.16 -1.63 16 26 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 30 H 0.12 1.75 8.06 -52.48 -0.42 1.32 16 31 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.13 3.20 5.64 -52.48 -0.30 2.90 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 0.58 7.99 -51.93 -0.41 0.16 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 1.01 8.00 -51.93 -0.42 0.59 16 40 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 339.65 15.07 5.12 5.12 Total: -1.00 -32.47 339.65 -7.49 -39.96 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.60 Total: 4.01 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -2.24 Total: -19.87 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: 0.76 Total: -24.62 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.50 Total: -20.49 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.47 -7.49 -39.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343841.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.460 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds