Wall clock time and date at job start Tue Mar 31 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47102 * 2 1 4 4 C 1.50704 * 109.46879 * 240.00409 * 2 1 3 5 5 O 1.20826 * 119.99626 * 240.00319 * 4 2 1 6 6 O 1.34258 * 120.00268 * 60.00055 * 4 2 1 7 7 C 1.35926 * 117.00151 * 175.01335 * 6 4 2 8 8 C 1.38827 * 120.01639 * 255.02118 * 7 6 4 9 9 C 1.38194 * 120.07503 * 179.72270 * 8 7 6 10 10 C 1.38150 * 120.12586 * 0.54725 * 9 8 7 11 11 C 1.38899 * 120.04146 * 359.72728 * 10 9 8 12 12 O 1.35746 * 120.03955 * 179.97438 * 11 10 9 13 13 C 1.34836 * 116.99620 * 185.62175 * 12 11 10 14 14 H 1.07995 * 120.00366 * 354.93642 * 13 12 11 15 15 C 1.38654 * 119.99911 * 174.94547 * 13 12 11 16 16 N 1.31559 * 119.99959 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00031 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47080 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47033 * 119.99672 * 17 15 13 20 20 H 1.48498 * 109.47047 * 239.99450 * 17 15 13 21 21 C 1.38566 * 120.02144 * 75.29270 * 7 6 4 22 22 C 1.52996 * 109.47088 * 120.00393 * 2 1 3 23 23 C 1.53783 * 113.61308 * 279.13334 * 22 2 1 24 24 C 1.53951 * 87.01930 * 220.04844 * 23 22 2 25 25 C 1.53781 * 113.61252 * 181.52799 * 22 2 1 26 26 H 1.09000 * 109.47072 * 59.99273 * 1 2 3 27 27 H 1.08998 * 109.47314 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46995 * 299.99769 * 1 2 3 29 29 H 1.07999 * 119.96326 * 359.97438 * 8 7 6 30 30 H 1.08003 * 119.93738 * 180.25618 * 9 8 7 31 31 H 1.07997 * 119.98199 * 179.69953 * 10 9 8 32 32 H 0.97005 * 120.00121 * 179.97438 * 16 15 13 33 33 H 1.08004 * 120.06014 * 359.97438 * 21 7 6 34 34 H 1.08998 * 112.85191 * 50.33082 * 22 2 1 35 35 H 1.08995 * 113.61557 * 334.56587 * 23 22 2 36 36 H 1.09005 * 113.61125 * 105.47188 * 23 22 2 37 37 H 1.08999 * 113.54142 * 270.81504 * 24 23 22 38 38 H 1.08998 * 113.74680 * 139.94477 * 24 23 22 39 39 H 1.09000 * 113.61323 * 254.52533 * 25 22 2 40 40 H 1.08996 * 113.61659 * 25.43481 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7269 -1.6928 -1.1197 6 8 1.7079 -0.2516 -2.4499 7 6 2.2775 -0.8747 -3.5153 8 6 3.3095 -0.2586 -4.2100 9 6 3.8933 -0.8935 -5.2898 10 6 3.4444 -2.1377 -5.6883 11 6 2.4083 -2.7563 -5.0004 12 8 1.9669 -3.9787 -5.3923 13 6 0.8843 -4.4712 -4.7570 14 1 0.4587 -3.9359 -3.9211 15 6 0.3176 -5.6649 -5.1768 16 7 0.8358 -6.3169 -6.1952 17 14 -1.1818 -6.3476 -4.2962 18 1 -1.5667 -5.4323 -3.1920 19 1 -2.3083 -6.4667 -5.2565 20 1 -0.8620 -7.6868 -3.7399 21 6 1.8245 -2.1227 -3.9121 22 6 2.0400 -0.7213 1.2492 23 6 2.0344 0.1558 2.5123 24 6 3.3855 -0.4901 2.8693 25 6 3.5733 -0.7444 1.3643 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.6593 0.7162 -3.9037 30 1 4.6988 -0.4139 -5.8261 31 1 3.8990 -2.6296 -6.5354 32 1 0.4395 -7.1522 -6.4887 33 1 1.0190 -2.6017 -3.3752 34 1 1.5766 -1.6973 1.3932 35 1 2.1026 1.2232 2.3030 36 1 1.2341 -0.0895 3.2107 37 1 3.2899 -1.4027 3.4576 38 1 4.1095 0.2092 3.2876 39 1 4.0136 -1.7153 1.1371 40 1 4.0629 0.0766 0.8405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343841.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:35 Heat of formation + Delta-G solvation = -84.451722 kcal Electronic energy + Delta-G solvation = -22929.318436 eV Core-core repulsion = 19482.093190 eV Total energy + Delta-G solvation = -3447.225246 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.46238 -40.77149 -39.88222 -38.37602 -37.31225 -34.39994 -34.17943 -31.36112 -30.63950 -27.52481 -27.04648 -26.29575 -25.64472 -23.61526 -23.09776 -21.50730 -20.40540 -20.11322 -19.47291 -18.40163 -17.80137 -17.29268 -16.90245 -16.32760 -16.14247 -15.99295 -15.83068 -15.64392 -15.11093 -14.68565 -14.57726 -13.91486 -13.70189 -13.59330 -13.33362 -13.22641 -13.11622 -13.01077 -12.81346 -12.64926 -12.53775 -12.30805 -12.19249 -11.91003 -11.70420 -11.51411 -11.44988 -11.07074 -11.05224 -10.88327 -9.82326 -9.18600 -8.56290 -6.25833 0.13105 0.51956 1.07729 1.27887 1.36117 1.46211 1.74006 2.10351 2.70180 3.02370 3.32806 3.43844 3.62860 3.65581 3.87687 3.96274 3.98794 4.15447 4.21884 4.26436 4.28630 4.29788 4.50889 4.70978 4.83482 4.84960 4.87151 4.89901 4.91831 4.98454 4.99012 5.11573 5.16357 5.25076 5.34196 5.35811 5.42033 5.49173 5.53709 5.59732 5.91068 5.98600 6.76666 6.87481 7.62631 8.66340 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.004629 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.756487 B = 6047.119833 C = 7241.828214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 H 0.140 0.860 4 C 0.450 3.550 5 O -0.519 6.519 6 O -0.295 6.295 7 C 0.114 3.886 8 C -0.193 4.193 9 C -0.047 4.047 10 C -0.196 4.196 11 C 0.127 3.873 12 O -0.221 6.221 13 C -0.419 4.419 14 H 0.089 0.911 15 C -0.015 4.015 16 N -0.912 5.912 17 Si 1.016 2.984 18 H -0.260 1.260 19 H -0.259 1.259 20 H -0.264 1.264 21 C -0.249 4.249 22 C -0.105 4.105 23 C -0.113 4.113 24 C -0.138 4.138 25 C -0.141 4.141 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.106 0.894 29 H 0.158 0.842 30 H 0.176 0.824 31 H 0.131 0.869 32 H 0.276 0.724 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 17.092 15.955 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 H 0.158 0.842 4 C 0.295 3.705 5 O -0.405 6.405 6 O -0.211 6.211 7 C 0.073 3.927 8 C -0.212 4.212 9 C -0.065 4.065 10 C -0.216 4.216 11 C 0.076 3.924 12 O -0.127 6.127 13 C -0.495 4.495 14 H 0.107 0.893 15 C -0.214 4.214 16 N -0.550 5.550 17 Si 0.834 3.166 18 H -0.184 1.184 19 H -0.184 1.184 20 H -0.188 1.188 21 C -0.269 4.269 22 C -0.123 4.123 23 C -0.150 4.150 24 C -0.175 4.175 25 C -0.179 4.179 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.125 0.875 29 H 0.175 0.825 30 H 0.194 0.806 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.260 16.420 15.691 22.746 hybrid contribution -0.555 -1.225 -0.230 1.365 sum 0.705 15.194 15.461 21.689 Atomic orbital electron populations 1.21806 0.90660 1.02680 1.04935 1.21357 0.99167 1.01106 0.86196 0.84232 1.25305 0.77122 0.83183 0.84904 1.90706 1.36408 1.26600 1.86753 1.84542 1.64739 1.57642 1.14165 1.18441 0.94794 0.91516 0.87945 1.21101 0.97142 1.02895 1.00018 1.21084 0.98336 0.92123 0.94918 1.20708 0.99763 0.97926 1.03161 1.19716 0.94159 0.85710 0.92778 1.83952 1.43787 1.27392 1.57601 1.21722 1.05609 1.07382 1.14791 0.89317 1.26538 1.02219 0.95386 0.97216 1.70163 1.41872 1.16556 1.26364 0.84592 0.75564 0.78439 0.77966 1.18354 1.18353 1.18848 1.21166 1.06039 0.97634 1.02092 1.22561 0.96651 0.99638 0.93461 1.22952 0.97683 0.99691 0.94647 1.22843 0.98379 1.01370 0.94916 1.22920 0.95799 1.01174 0.97974 0.91231 0.93657 0.87490 0.82488 0.80620 0.85132 0.91469 0.87502 0.90313 0.87789 0.89782 0.90360 0.89956 0.93966 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.11 71.98 0.66 -1.90 16 2 C -0.06 -1.24 2.56 -11.54 -0.03 -1.27 16 3 H 0.14 2.03 7.98 -2.39 -0.02 2.01 16 4 C 0.45 14.80 6.93 71.24 0.49 15.29 16 5 O -0.52 -21.38 14.39 21.96 0.32 -21.07 16 6 O -0.30 -10.48 9.93 4.57 0.05 -10.43 16 7 C 0.11 4.68 5.18 22.49 0.12 4.80 16 8 C -0.19 -6.57 9.99 22.40 0.22 -6.34 16 9 C -0.05 -1.56 10.03 22.24 0.22 -1.34 16 10 C -0.20 -8.45 9.99 22.41 0.22 -8.22 16 11 C 0.13 6.73 6.65 22.56 0.15 6.88 16 12 O -0.22 -13.85 9.76 -22.76 -0.22 -14.08 16 13 C -0.42 -25.79 9.49 67.92 0.64 -25.15 16 14 H 0.09 5.25 5.20 -2.91 -0.02 5.23 16 15 C -0.02 -0.88 5.49 84.83 0.47 -0.42 16 16 N -0.91 -56.74 13.67 21.61 0.30 -56.44 16 17 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 19 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 21 C -0.25 -12.38 8.58 22.48 0.19 -12.19 16 22 C -0.10 -2.10 2.68 -10.27 -0.03 -2.13 16 23 C -0.11 -1.40 7.63 31.18 0.24 -1.16 16 24 C -0.14 -2.08 8.09 31.18 0.25 -1.83 16 25 C -0.14 -3.08 6.29 31.12 0.20 -2.89 16 26 H 0.07 1.28 8.11 -2.39 -0.02 1.26 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.18 4.01 8.06 -2.91 -0.02 3.98 16 31 H 0.13 5.31 8.06 -2.91 -0.02 5.28 16 32 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 33 H 0.11 5.68 5.64 -2.91 -0.02 5.66 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.10 0.90 7.99 -2.39 -0.02 0.88 16 36 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.04 1.18 8.00 -2.39 -0.02 1.16 16 40 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -78.29 339.65 7.52 -70.78 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 1.04 Total: 22.52 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 4.02 Total: -37.85 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.30 Total: -56.44 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: 0.14 Total: -45.58 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -78.29 7.52 -70.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343841.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.676 kcal (2) G-P(sol) polarization free energy of solvation -78.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds