Wall clock time and date at job start Tue Mar 31 2020 05:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47307 * 2 1 4 4 C 1.50702 * 120.00078 * 268.63282 * 3 2 1 5 5 C 1.33087 * 119.99673 * 88.63562 * 3 2 1 6 6 C 1.50707 * 119.99758 * 171.46199 * 5 3 2 7 7 C 1.46938 * 120.00542 * 351.45620 * 5 3 2 8 8 O 1.21543 * 119.99534 * 353.89648 * 7 5 3 9 9 O 1.34802 * 120.00268 * 173.89819 * 7 5 3 10 10 C 1.35909 * 117.00112 * 185.22422 * 9 7 5 11 11 C 1.38836 * 120.02025 * 255.36824 * 10 9 7 12 12 C 1.38190 * 120.08075 * 179.73759 * 11 10 9 13 13 C 1.38152 * 120.11956 * 0.51006 * 12 11 10 14 14 C 1.38889 * 120.04925 * 359.76676 * 13 12 11 15 15 O 1.35749 * 120.04511 * 179.97438 * 14 13 12 16 16 C 1.34828 * 117.00067 * 185.77775 * 15 14 13 17 17 H 1.07997 * 120.00126 * 5.43510 * 16 15 14 18 18 C 1.38656 * 120.00186 * 185.43764 * 16 15 14 19 19 N 1.31564 * 119.99768 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00310 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47104 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47331 * 120.00245 * 20 18 16 23 23 H 1.48509 * 109.46940 * 239.99969 * 20 18 16 24 24 C 1.38580 * 120.02162 * 75.63560 * 10 9 7 25 25 H 1.08995 * 109.47178 * 59.99625 * 1 2 3 26 26 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46750 * 299.99506 * 1 2 3 28 28 H 1.09002 * 109.47521 * 120.00352 * 2 1 3 29 29 H 1.09001 * 109.47229 * 240.00266 * 2 1 3 30 30 H 1.08996 * 109.47152 * 4.99968 * 4 3 2 31 31 H 1.08999 * 109.46689 * 125.00104 * 4 3 2 32 32 H 1.09001 * 109.46800 * 245.00191 * 4 3 2 33 33 H 1.08999 * 109.47259 * 94.57358 * 6 5 3 34 34 H 1.09007 * 109.46664 * 214.57402 * 6 5 3 35 35 H 1.09003 * 109.47052 * 334.56706 * 6 5 3 36 36 H 1.08002 * 119.96171 * 359.97438 * 11 10 9 37 37 H 1.07998 * 119.93859 * 180.22404 * 12 11 10 38 38 H 1.08010 * 119.97468 * 179.73813 * 13 12 11 39 39 H 0.96999 * 119.99962 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.06793 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3129 2.1209 -1.3047 5 6 2.2283 2.0573 1.1523 6 6 2.9090 3.4018 1.1641 7 6 1.7809 1.4492 2.4129 8 8 1.1345 0.4201 2.3954 9 8 2.0872 2.0328 3.5888 10 6 1.7384 1.3636 4.7191 11 6 0.6466 1.7843 5.4665 12 6 0.2876 1.1016 6.6130 13 6 1.0200 0.0050 7.0249 14 6 2.1167 -0.4169 6.2844 15 8 2.8366 -1.4941 6.6895 16 6 3.9566 -1.7783 5.9947 17 1 4.2920 -1.1110 5.2145 18 6 4.6778 -2.9272 6.2817 19 7 4.2689 -3.7403 7.2317 20 14 6.2291 -3.3212 5.3186 21 1 6.4703 -2.2569 4.3115 22 1 7.3843 -3.3941 6.2489 23 1 6.0656 -4.6265 4.6293 24 6 2.4757 0.2643 5.1295 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0121 1.4796 -2.1332 31 1 1.7506 3.0538 -1.3447 32 1 3.3789 2.3355 -1.3799 33 1 2.1565 4.1902 1.1484 34 1 3.5139 3.4948 2.0662 35 1 3.5490 3.4928 0.2865 36 1 0.0748 2.6439 5.1493 37 1 -0.5643 1.4286 7.1907 38 1 0.7398 -0.5244 7.9238 39 1 4.7737 -4.5439 7.4328 40 1 3.3277 -0.0621 4.5516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841344080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:56 Heat of formation + Delta-G solvation = -69.424567 kcal Electronic energy + Delta-G solvation = -23014.304279 eV Core-core repulsion = 19567.730660 eV Total energy + Delta-G solvation = -3446.573619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88260 -38.96462 -37.79629 -36.13285 -35.57170 -32.38978 -32.25335 -29.85360 -29.18505 -28.76497 -26.36679 -25.43174 -23.94835 -22.60800 -21.68291 -20.81811 -18.59287 -18.24276 -17.68552 -16.37011 -15.91200 -15.79576 -15.12770 -14.93644 -14.50765 -14.38399 -14.08637 -13.81570 -13.59556 -13.18550 -13.11126 -12.79527 -12.75533 -12.52628 -12.44876 -12.09398 -11.96381 -11.89250 -11.57725 -11.29358 -11.08817 -10.98889 -10.84910 -10.79639 -10.46116 -10.18198 -9.85159 -9.53810 -8.95754 -8.87726 -8.13750 -7.34140 -6.48648 -4.07851 1.11647 1.81762 2.23370 3.02208 3.09859 3.12337 3.18094 3.22972 3.94164 4.46926 4.58249 4.70642 4.92846 5.05663 5.07561 5.18944 5.24384 5.32291 5.47055 5.50829 5.57483 5.62017 5.62405 5.73224 5.77824 5.81103 5.99824 6.02385 6.16883 6.18472 6.23875 6.29374 6.43363 6.55893 6.65103 6.95427 7.03620 7.11529 7.15533 7.33363 7.63032 7.95198 8.25110 8.96671 9.63643 10.69034 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.005106 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.595114 B = 5482.528902 C = 6671.391284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 C -0.030 4.030 4 C -0.122 4.122 5 C -0.173 4.173 6 C -0.109 4.109 7 C 0.490 3.510 8 O -0.478 6.478 9 O -0.294 6.294 10 C 0.125 3.875 11 C -0.211 4.211 12 C -0.065 4.065 13 C -0.188 4.188 14 C 0.165 3.835 15 O -0.171 6.171 16 C -0.392 4.392 17 H 0.091 0.909 18 C 0.041 3.959 19 N -0.859 5.859 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.275 1.275 24 C -0.233 4.233 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.270 0.730 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 11.912 -14.151 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.141 4.141 3 C -0.030 4.030 4 C -0.178 4.178 5 C -0.174 4.174 6 C -0.165 4.165 7 C 0.337 3.663 8 O -0.365 6.365 9 O -0.209 6.209 10 C 0.085 3.915 11 C -0.230 4.230 12 C -0.083 4.083 13 C -0.207 4.207 14 C 0.110 3.890 15 O -0.074 6.074 16 C -0.468 4.468 17 H 0.108 0.892 18 C -0.163 4.163 19 N -0.494 5.494 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.253 4.253 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.886 11.203 -13.846 18.230 hybrid contribution 0.812 -0.261 -0.430 0.955 sum -3.075 10.942 -14.276 18.248 Atomic orbital electron populations 1.21568 0.93965 1.02028 1.01501 1.20995 0.97361 0.92105 1.03611 1.22505 0.91060 0.95645 0.93822 1.20978 1.02549 1.00550 0.93703 1.20471 1.07611 0.99976 0.89392 1.20725 0.99796 0.92640 1.03359 1.21582 0.77871 0.82627 0.84212 1.90858 1.35739 1.22735 1.87190 1.84568 1.74162 1.48931 1.13287 1.18194 0.95025 0.93266 0.85058 1.20518 0.98724 1.04101 0.99686 1.20485 0.98209 0.94220 0.95373 1.20314 0.97810 1.00308 1.02292 1.19122 0.90889 0.87970 0.90998 1.84013 1.34041 1.38083 1.51288 1.21352 0.98817 1.08229 1.18407 0.89188 1.25286 0.99451 0.94647 0.96944 1.70046 1.38781 1.12163 1.28405 0.85660 0.79908 0.78916 0.79064 1.19088 1.19966 1.20016 1.21199 1.04530 0.98665 1.00904 0.93717 0.92450 0.91538 0.88491 0.91656 0.91070 0.90432 0.90262 0.91274 0.90538 0.91313 0.86864 0.86056 0.85921 0.91963 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.37 37.15 0.35 -1.33 16 2 C -0.10 -1.34 5.27 -27.88 -0.15 -1.48 16 3 C -0.03 -0.34 5.35 -101.14 -0.54 -0.88 16 4 C -0.12 -0.92 8.81 36.01 0.32 -0.61 16 5 C -0.17 -2.31 5.98 -102.89 -0.62 -2.92 16 6 C -0.11 -1.12 9.36 36.01 0.34 -0.78 16 7 C 0.49 8.64 7.55 34.25 0.26 8.90 16 8 O -0.48 -9.49 10.93 -19.30 -0.21 -9.70 16 9 O -0.29 -5.54 9.33 -24.99 -0.23 -5.78 16 10 C 0.13 2.63 5.10 -39.23 -0.20 2.43 16 11 C -0.21 -4.00 9.99 -39.38 -0.39 -4.40 16 12 C -0.06 -1.19 10.03 -39.63 -0.40 -1.59 16 13 C -0.19 -4.05 9.99 -39.37 -0.39 -4.44 16 14 C 0.16 4.13 6.64 -39.13 -0.26 3.87 16 15 O -0.17 -4.98 9.76 0.06 0.00 -4.98 16 16 C -0.39 -11.22 9.44 30.89 0.29 -10.93 16 17 H 0.09 2.44 5.29 -52.49 -0.28 2.16 16 18 C 0.04 1.15 5.49 -17.51 -0.10 1.06 16 19 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 20 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 C -0.23 -5.52 8.77 -39.24 -0.34 -5.87 16 25 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.99 6.42 -51.93 -0.33 0.65 16 28 H 0.10 1.57 5.93 -51.93 -0.31 1.26 16 29 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 30 H 0.07 0.47 7.96 -51.93 -0.41 0.05 16 31 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.08 0.52 7.41 -51.93 -0.38 0.13 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.86 7.74 -51.92 -0.40 0.46 16 35 H 0.07 0.55 6.52 -51.93 -0.34 0.21 16 36 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.13 3.18 5.71 -52.49 -0.30 2.88 16 LS Contribution 337.76 15.07 5.09 5.09 Total: -1.00 -32.27 337.76 -6.72 -38.99 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.27 Total: 4.07 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -1.84 Total: -18.97 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.76 Total: -24.60 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.44 Total: -20.45 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.27 -6.72 -38.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.436 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds