Wall clock time and date at job start Tue Mar 31 2020 05:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47307 * 2 1 4 4 C 1.50702 * 120.00078 * 268.63282 * 3 2 1 5 5 C 1.33087 * 119.99673 * 88.63562 * 3 2 1 6 6 C 1.50707 * 119.99758 * 171.46199 * 5 3 2 7 7 C 1.46938 * 120.00542 * 351.45620 * 5 3 2 8 8 O 1.21543 * 119.99534 * 353.89648 * 7 5 3 9 9 O 1.34802 * 120.00268 * 173.89819 * 7 5 3 10 10 C 1.35909 * 117.00112 * 185.22422 * 9 7 5 11 11 C 1.38836 * 120.02025 * 255.36824 * 10 9 7 12 12 C 1.38190 * 120.08075 * 179.73759 * 11 10 9 13 13 C 1.38152 * 120.11956 * 0.51006 * 12 11 10 14 14 C 1.38889 * 120.04925 * 359.76676 * 13 12 11 15 15 O 1.35749 * 120.04511 * 179.97438 * 14 13 12 16 16 C 1.34828 * 117.00067 * 185.77775 * 15 14 13 17 17 H 1.07997 * 120.00126 * 5.43510 * 16 15 14 18 18 C 1.38656 * 120.00186 * 185.43764 * 16 15 14 19 19 N 1.31564 * 119.99768 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00310 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47104 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47331 * 120.00245 * 20 18 16 23 23 H 1.48509 * 109.46940 * 239.99969 * 20 18 16 24 24 C 1.38580 * 120.02162 * 75.63560 * 10 9 7 25 25 H 1.08995 * 109.47178 * 59.99625 * 1 2 3 26 26 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46750 * 299.99506 * 1 2 3 28 28 H 1.09002 * 109.47521 * 120.00352 * 2 1 3 29 29 H 1.09001 * 109.47229 * 240.00266 * 2 1 3 30 30 H 1.08996 * 109.47152 * 4.99968 * 4 3 2 31 31 H 1.08999 * 109.46689 * 125.00104 * 4 3 2 32 32 H 1.09001 * 109.46800 * 245.00191 * 4 3 2 33 33 H 1.08999 * 109.47259 * 94.57358 * 6 5 3 34 34 H 1.09007 * 109.46664 * 214.57402 * 6 5 3 35 35 H 1.09003 * 109.47052 * 334.56706 * 6 5 3 36 36 H 1.08002 * 119.96171 * 359.97438 * 11 10 9 37 37 H 1.07998 * 119.93859 * 180.22404 * 12 11 10 38 38 H 1.08010 * 119.97468 * 179.73813 * 13 12 11 39 39 H 0.96999 * 119.99962 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.06793 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3129 2.1209 -1.3047 5 6 2.2283 2.0573 1.1523 6 6 2.9090 3.4018 1.1641 7 6 1.7809 1.4492 2.4129 8 8 1.1345 0.4201 2.3954 9 8 2.0872 2.0328 3.5888 10 6 1.7384 1.3636 4.7191 11 6 0.6466 1.7843 5.4665 12 6 0.2876 1.1016 6.6130 13 6 1.0200 0.0050 7.0249 14 6 2.1167 -0.4169 6.2844 15 8 2.8366 -1.4941 6.6895 16 6 3.9566 -1.7783 5.9947 17 1 4.2920 -1.1110 5.2145 18 6 4.6778 -2.9272 6.2817 19 7 4.2689 -3.7403 7.2317 20 14 6.2291 -3.3212 5.3186 21 1 6.4703 -2.2569 4.3115 22 1 7.3843 -3.3941 6.2489 23 1 6.0656 -4.6265 4.6293 24 6 2.4757 0.2643 5.1295 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0121 1.4796 -2.1332 31 1 1.7506 3.0538 -1.3447 32 1 3.3789 2.3355 -1.3799 33 1 2.1565 4.1902 1.1484 34 1 3.5139 3.4948 2.0662 35 1 3.5490 3.4928 0.2865 36 1 0.0748 2.6439 5.1493 37 1 -0.5643 1.4286 7.1907 38 1 0.7398 -0.5244 7.9238 39 1 4.7737 -4.5439 7.4328 40 1 3.3277 -0.0621 4.5516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841344080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:56 Heat of formation + Delta-G solvation = -87.601307 kcal Electronic energy + Delta-G solvation = -23015.092482 eV Core-core repulsion = 19567.730660 eV Total energy + Delta-G solvation = -3447.361822 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.34123 -40.68820 -39.23874 -37.64965 -36.98682 -34.37610 -33.34037 -31.42719 -30.70384 -29.90561 -27.53614 -27.22997 -25.25770 -23.81004 -23.40770 -22.33598 -20.14043 -19.83938 -19.37525 -17.97147 -17.38653 -17.08526 -16.91637 -16.16647 -15.97872 -15.90126 -15.67094 -15.43707 -14.88536 -14.70213 -14.43836 -14.06038 -13.78055 -13.65105 -13.41887 -13.40795 -13.20294 -13.02878 -12.92329 -12.76268 -12.71628 -12.58290 -12.20663 -12.15363 -11.96528 -11.66936 -11.53747 -11.10965 -10.87944 -9.89468 -9.82460 -9.18931 -8.56192 -6.25559 -0.00343 0.17902 0.51737 1.27978 1.36307 1.46373 1.75365 1.84447 2.10350 2.70405 3.03692 3.33996 3.59460 3.67618 3.95752 3.98174 4.14627 4.22348 4.28919 4.41684 4.46086 4.50130 4.58392 4.66509 4.75220 4.85473 4.87189 4.91531 4.96505 4.98602 5.06361 5.13200 5.20283 5.31167 5.32903 5.37042 5.43136 5.49137 5.57371 5.69814 5.90842 5.99748 6.79476 6.87626 7.62721 8.66473 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.005106 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.595114 B = 5482.528902 C = 6671.391284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.111 4.111 3 C -0.007 4.007 4 C -0.120 4.120 5 C -0.200 4.200 6 C -0.102 4.102 7 C 0.480 3.520 8 O -0.511 6.511 9 O -0.295 6.295 10 C 0.119 3.881 11 C -0.194 4.194 12 C -0.046 4.046 13 C -0.195 4.195 14 C 0.129 3.871 15 O -0.220 6.220 16 C -0.418 4.418 17 H 0.090 0.910 18 C -0.015 4.015 19 N -0.912 5.912 20 Si 1.015 2.985 21 H -0.259 1.259 22 H -0.259 1.259 23 H -0.264 1.264 24 C -0.251 4.251 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.152 0.848 37 H 0.176 0.824 38 H 0.132 0.868 39 H 0.276 0.724 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 14.512 -16.901 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.148 4.148 3 C -0.008 4.008 4 C -0.175 4.175 5 C -0.201 4.201 6 C -0.158 4.158 7 C 0.329 3.671 8 O -0.400 6.400 9 O -0.211 6.211 10 C 0.078 3.922 11 C -0.212 4.212 12 C -0.064 4.064 13 C -0.215 4.215 14 C 0.078 3.922 15 O -0.126 6.126 16 C -0.494 4.494 17 H 0.107 0.893 18 C -0.214 4.214 19 N -0.549 5.549 20 Si 0.834 3.166 21 H -0.183 1.183 22 H -0.184 1.184 23 H -0.189 1.189 24 C -0.271 4.271 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.170 0.830 37 H 0.193 0.807 38 H 0.150 0.850 39 H 0.085 0.915 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.463 13.858 -16.608 22.086 hybrid contribution 0.731 -0.883 0.322 1.191 sum -3.732 12.975 -16.286 21.154 Atomic orbital electron populations 1.21510 0.93707 1.01862 1.01518 1.21018 0.97668 0.93293 1.02813 1.22910 0.88071 0.94552 0.95255 1.21130 1.04052 1.01172 0.91187 1.20664 1.10096 1.01861 0.87507 1.20750 1.00086 0.91090 1.03905 1.22573 0.77350 0.82398 0.84779 1.90855 1.37522 1.24216 1.87408 1.84584 1.74512 1.48682 1.13296 1.18396 0.95144 0.92471 0.86235 1.21089 0.97188 1.04283 0.98688 1.21067 0.98410 0.92005 0.94888 1.20693 0.96996 1.01386 1.02378 1.19693 0.92226 0.87810 0.92437 1.83966 1.35205 1.40420 1.53025 1.21712 0.99744 1.09083 1.18853 0.89285 1.26542 1.02996 0.93935 0.97916 1.70164 1.40976 1.13144 1.30650 0.84601 0.75310 0.78959 0.77759 1.18260 1.18357 1.18900 1.21154 1.04830 1.00241 1.00835 0.90694 0.92851 0.94280 0.92697 0.89014 0.89452 0.88427 0.88338 0.89835 0.92201 0.88433 0.83015 0.80696 0.85006 0.91477 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.37 71.98 0.67 -2.46 16 2 C -0.11 -2.76 5.27 29.85 0.16 -2.61 16 3 C -0.01 -0.15 5.35 -17.60 -0.09 -0.24 16 4 C -0.12 -1.26 8.81 71.24 0.63 -0.63 16 5 C -0.20 -5.08 5.98 -18.74 -0.11 -5.19 16 6 C -0.10 -1.85 9.36 71.24 0.67 -1.18 16 7 C 0.48 17.18 7.55 70.10 0.53 17.71 16 8 O -0.51 -21.15 10.93 19.70 0.22 -20.94 16 9 O -0.30 -11.22 9.33 -0.68 -0.01 -11.23 16 10 C 0.12 5.03 5.10 22.49 0.11 5.15 16 11 C -0.19 -6.90 9.99 22.40 0.22 -6.68 16 12 C -0.05 -1.57 10.03 22.24 0.22 -1.35 16 13 C -0.20 -8.47 9.99 22.41 0.22 -8.25 16 14 C 0.13 6.86 6.64 22.56 0.15 7.01 16 15 O -0.22 -13.76 9.76 -22.71 -0.22 -13.98 16 16 C -0.42 -25.63 9.44 67.92 0.64 -24.98 16 17 H 0.09 5.23 5.29 -2.91 -0.02 5.22 16 18 C -0.02 -0.90 5.49 84.83 0.47 -0.43 16 19 N -0.91 -56.69 13.67 21.61 0.30 -56.39 16 20 Si 1.01 44.41 29.55 68.60 2.03 46.44 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 24 C -0.25 -12.56 8.77 22.49 0.20 -12.36 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 27 H 0.04 1.16 6.42 -2.39 -0.02 1.14 16 28 H 0.05 1.87 5.93 -2.39 -0.01 1.85 16 29 H 0.09 1.77 8.06 -2.39 -0.02 1.75 16 30 H 0.09 0.70 7.96 -2.39 -0.02 0.68 16 31 H 0.10 0.75 8.10 -2.39 -0.02 0.73 16 32 H 0.10 0.78 7.41 -2.39 -0.02 0.76 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.28 7.74 -2.38 -0.02 1.26 16 35 H 0.10 1.17 6.52 -2.39 -0.02 1.16 16 36 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.18 4.16 8.06 -2.91 -0.02 4.13 16 38 H 0.13 5.37 8.06 -2.91 -0.02 5.35 16 39 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.11 5.74 5.71 -2.91 -0.02 5.73 16 Total: -1.00 -78.25 337.76 8.05 -70.20 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 1.05 Total: 22.40 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 4.69 Total: -36.50 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.30 Total: -56.39 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -0.01 Total: -46.15 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -78.25 8.05 -70.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.403 kcal (2) G-P(sol) polarization free energy of solvation -78.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds