Wall clock time and date at job start Tue Mar 31 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47189 * 2 1 4 4 C 1.50706 * 119.99913 * 274.24877 * 3 2 1 5 5 C 1.33085 * 120.00084 * 94.25139 * 3 2 1 6 6 C 1.50700 * 119.99935 * 2.79969 * 5 3 2 7 7 C 1.46932 * 120.00164 * 182.79793 * 5 3 2 8 8 O 1.21545 * 120.00244 * 6.12539 * 7 5 3 9 9 O 1.34814 * 120.00059 * 186.11877 * 7 5 3 10 10 C 1.35910 * 116.99809 * 175.77675 * 9 7 5 11 11 C 1.38838 * 120.02476 * 253.19086 * 10 9 7 12 12 C 1.38180 * 120.07990 * 180.29899 * 11 10 9 13 13 C 1.38155 * 120.12921 * 359.95914 * 12 11 10 14 14 C 1.38898 * 120.04124 * 0.04178 * 13 12 11 15 15 O 1.35750 * 120.04446 * 179.97438 * 14 13 12 16 16 C 1.34825 * 117.00605 * 185.47331 * 15 14 13 17 17 H 1.08008 * 119.99626 * 5.39218 * 16 15 14 18 18 C 1.38649 * 120.00166 * 185.39454 * 16 15 14 19 19 N 1.31550 * 120.00335 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99760 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47297 * 59.99963 * 20 18 16 22 22 H 1.48510 * 109.46945 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47255 * 299.99646 * 20 18 16 24 24 C 1.38583 * 120.01811 * 73.46933 * 10 9 7 25 25 H 1.09000 * 109.47154 * 300.00198 * 1 2 3 26 26 H 1.09006 * 109.46869 * 60.00275 * 1 2 3 27 27 H 1.08997 * 109.47201 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47154 * 239.99802 * 2 1 3 29 29 H 1.08993 * 109.47065 * 119.99948 * 2 1 3 30 30 H 1.08998 * 109.46914 * 235.94572 * 4 3 2 31 31 H 1.08997 * 109.47034 * 355.95346 * 4 3 2 32 32 H 1.09002 * 109.46626 * 115.94665 * 4 3 2 33 33 H 1.09007 * 109.47267 * 184.85754 * 6 5 3 34 34 H 1.08998 * 109.47202 * 304.86006 * 6 5 3 35 35 H 1.08995 * 109.47221 * 64.85895 * 6 5 3 36 36 H 1.07998 * 119.95442 * 0.27476 * 11 10 9 37 37 H 1.07998 * 119.93699 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.98469 * 180.02562 * 13 12 11 39 39 H 0.97003 * 120.00870 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.06442 * 359.70291 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1923 2.1635 -1.3016 5 6 2.3347 2.0197 1.1494 6 6 2.2351 1.2572 2.4454 7 6 2.7657 3.4244 1.1547 8 8 2.7398 4.0720 0.1265 9 8 3.1898 3.9950 2.3002 10 6 3.6571 5.2686 2.2189 11 6 5.0188 5.5172 2.3266 12 6 5.4945 6.8123 2.2503 13 6 4.6173 7.8636 2.0658 14 6 3.2540 7.6208 1.9574 15 8 2.3920 8.6538 1.7766 16 6 1.0756 8.3627 1.7928 17 1 0.7468 7.3618 2.0311 18 6 0.1441 9.3480 1.5037 19 7 0.5445 10.5671 1.2139 20 14 -1.6797 8.9448 1.5270 21 1 -2.0652 8.4730 2.8812 22 1 -2.4601 10.1616 1.1865 23 1 -1.9639 7.8794 0.5322 24 6 2.7741 6.3206 2.0342 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.2176 2.5222 -1.3915 31 1 1.9673 1.4941 -2.1318 32 1 1.5075 3.0113 -1.3226 33 1 2.4360 1.9299 3.2792 34 1 1.2322 0.8423 2.5467 35 1 2.9650 0.4477 2.4477 36 1 5.7069 4.6974 2.4706 37 1 6.5541 7.0031 2.3348 38 1 4.9917 8.8748 2.0061 39 1 -0.1072 11.2567 1.0119 40 1 1.7145 6.1292 1.9498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841344084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:59 Heat of formation + Delta-G solvation = -74.261957 kcal Electronic energy + Delta-G solvation = -22797.846533 eV Core-core repulsion = 19351.063149 eV Total energy + Delta-G solvation = -3446.783384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85251 -38.92664 -37.78977 -36.34612 -35.62703 -32.30708 -31.95062 -30.14127 -29.56304 -28.85470 -25.54292 -25.15711 -24.69954 -22.88743 -21.66919 -20.74289 -18.52289 -18.23913 -17.63902 -16.32712 -16.05262 -15.77979 -15.12319 -14.95340 -14.69840 -14.28433 -14.10781 -13.78401 -13.54838 -13.37571 -13.04068 -13.00785 -12.78771 -12.53391 -12.40900 -12.07774 -11.83524 -11.69817 -11.59197 -11.49846 -11.24875 -11.10811 -10.99359 -10.83674 -10.49801 -10.26461 -9.91013 -9.52620 -9.00485 -8.85619 -8.12620 -7.33211 -6.47119 -4.06312 1.11971 1.83116 2.24079 3.00549 3.12424 3.13375 3.16682 3.22790 3.95716 4.45587 4.55964 4.61871 4.86302 4.94515 5.03316 5.08616 5.19691 5.28373 5.36245 5.51070 5.54885 5.59901 5.62091 5.74941 5.77466 5.81372 5.86034 5.92042 6.02041 6.07207 6.18501 6.25434 6.37954 6.53700 6.61640 6.94411 7.04275 7.11518 7.16404 7.34484 7.63581 7.96533 8.24358 8.97977 9.64644 10.70400 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013333 B = 0.004876 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.504221 B = 5740.903354 C = 7241.615146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.031 4.031 4 C -0.122 4.122 5 C -0.171 4.171 6 C -0.110 4.110 7 C 0.490 3.510 8 O -0.482 6.482 9 O -0.293 6.293 10 C 0.123 3.877 11 C -0.212 4.212 12 C -0.065 4.065 13 C -0.189 4.189 14 C 0.164 3.836 15 O -0.171 6.171 16 C -0.392 4.392 17 H 0.090 0.910 18 C 0.042 3.958 19 N -0.860 5.860 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.269 1.269 24 C -0.229 4.229 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.271 0.729 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 -19.657 -0.436 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.032 4.032 4 C -0.178 4.178 5 C -0.172 4.172 6 C -0.166 4.166 7 C 0.337 3.663 8 O -0.370 6.370 9 O -0.209 6.209 10 C 0.082 3.918 11 C -0.232 4.232 12 C -0.083 4.083 13 C -0.208 4.208 14 C 0.109 3.891 15 O -0.074 6.074 16 C -0.468 4.468 17 H 0.107 0.893 18 C -0.162 4.162 19 N -0.495 5.495 20 Si 0.764 3.236 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.249 4.249 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.286 -18.945 -0.843 19.101 hybrid contribution -0.930 -0.105 -0.009 0.936 sum 1.356 -19.050 -0.852 19.117 Atomic orbital electron populations 1.21691 0.93897 1.02066 1.02782 1.20767 0.96768 0.92093 1.03555 1.22506 0.90459 0.95569 0.94646 1.21107 1.04031 0.99832 0.92796 1.20477 1.08785 0.90951 0.97032 1.20722 1.01968 0.99713 0.94207 1.21576 0.75183 0.88114 0.81434 1.90904 1.49441 1.64063 1.32556 1.84566 1.73322 1.27802 1.35183 1.18218 0.91901 0.80528 1.01150 1.20486 0.92728 0.97330 1.12629 1.20473 0.98472 0.91359 0.98018 1.20313 0.90671 0.99593 1.10216 1.19136 0.90545 0.87040 0.92350 1.84007 1.16701 1.29271 1.77374 1.21260 0.78162 0.98187 1.49238 0.89291 1.25270 1.00226 0.94661 0.96090 1.70019 1.35251 1.01492 1.42690 0.85803 0.80351 0.78249 0.79216 1.19389 1.20103 1.19445 1.21217 1.00488 0.92173 1.11039 0.92167 0.92191 0.91961 0.90372 0.90189 0.90132 0.92470 0.89344 0.90523 0.91295 0.91206 0.86809 0.86032 0.85919 0.91861 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 37.16 0.37 -0.74 16 2 C -0.09 -0.75 5.55 -27.89 -0.15 -0.90 16 3 C -0.03 -0.36 5.37 -101.14 -0.54 -0.90 16 4 C -0.12 -1.51 8.34 36.01 0.30 -1.21 16 5 C -0.17 -2.28 5.99 -102.90 -0.62 -2.90 16 6 C -0.11 -1.13 8.59 36.01 0.31 -0.82 16 7 C 0.49 8.77 7.66 34.25 0.26 9.04 16 8 O -0.48 -9.94 12.57 -19.30 -0.24 -10.18 16 9 O -0.29 -5.57 9.04 -25.03 -0.23 -5.79 16 10 C 0.12 2.60 5.24 -39.23 -0.21 2.40 16 11 C -0.21 -4.03 9.99 -39.38 -0.39 -4.42 16 12 C -0.06 -1.20 10.03 -39.63 -0.40 -1.59 16 13 C -0.19 -4.08 9.99 -39.37 -0.39 -4.47 16 14 C 0.16 4.14 6.65 -39.13 -0.26 3.88 16 15 O -0.17 -5.00 9.76 0.06 0.00 -5.00 16 16 C -0.39 -11.34 9.44 30.88 0.29 -11.05 16 17 H 0.09 2.44 5.29 -52.48 -0.28 2.16 16 18 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 19 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 20 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 24 C -0.23 -5.50 8.47 -39.24 -0.33 -5.83 16 25 H 0.06 0.49 7.85 -51.93 -0.41 0.08 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.08 0.55 6.45 -51.93 -0.33 0.21 16 30 H 0.08 1.11 7.32 -51.93 -0.38 0.73 16 31 H 0.06 0.55 7.97 -51.93 -0.41 0.13 16 32 H 0.09 1.29 7.16 -51.93 -0.37 0.92 16 33 H 0.08 0.88 7.21 -51.93 -0.37 0.50 16 34 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 35 H 0.07 0.58 7.76 -51.93 -0.40 0.18 16 36 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.13 3.24 5.71 -52.49 -0.30 2.94 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -32.69 339.75 -6.80 -39.49 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.32 Total: 3.52 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -1.86 Total: -18.43 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.76 Total: -24.76 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.47 Total: -20.97 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.69 -6.80 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.775 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds