Wall clock time and date at job start Tue Mar 31 2020 05:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47189 * 2 1 4 4 C 1.50706 * 119.99913 * 274.24877 * 3 2 1 5 5 C 1.33085 * 120.00084 * 94.25139 * 3 2 1 6 6 C 1.50700 * 119.99935 * 2.79969 * 5 3 2 7 7 C 1.46932 * 120.00164 * 182.79793 * 5 3 2 8 8 O 1.21545 * 120.00244 * 6.12539 * 7 5 3 9 9 O 1.34814 * 120.00059 * 186.11877 * 7 5 3 10 10 C 1.35910 * 116.99809 * 175.77675 * 9 7 5 11 11 C 1.38838 * 120.02476 * 253.19086 * 10 9 7 12 12 C 1.38180 * 120.07990 * 180.29899 * 11 10 9 13 13 C 1.38155 * 120.12921 * 359.95914 * 12 11 10 14 14 C 1.38898 * 120.04124 * 0.04178 * 13 12 11 15 15 O 1.35750 * 120.04446 * 179.97438 * 14 13 12 16 16 C 1.34825 * 117.00605 * 185.47331 * 15 14 13 17 17 H 1.08008 * 119.99626 * 5.39218 * 16 15 14 18 18 C 1.38649 * 120.00166 * 185.39454 * 16 15 14 19 19 N 1.31550 * 120.00335 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99760 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47297 * 59.99963 * 20 18 16 22 22 H 1.48510 * 109.46945 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47255 * 299.99646 * 20 18 16 24 24 C 1.38583 * 120.01811 * 73.46933 * 10 9 7 25 25 H 1.09000 * 109.47154 * 300.00198 * 1 2 3 26 26 H 1.09006 * 109.46869 * 60.00275 * 1 2 3 27 27 H 1.08997 * 109.47201 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47154 * 239.99802 * 2 1 3 29 29 H 1.08993 * 109.47065 * 119.99948 * 2 1 3 30 30 H 1.08998 * 109.46914 * 235.94572 * 4 3 2 31 31 H 1.08997 * 109.47034 * 355.95346 * 4 3 2 32 32 H 1.09002 * 109.46626 * 115.94665 * 4 3 2 33 33 H 1.09007 * 109.47267 * 184.85754 * 6 5 3 34 34 H 1.08998 * 109.47202 * 304.86006 * 6 5 3 35 35 H 1.08995 * 109.47221 * 64.85895 * 6 5 3 36 36 H 1.07998 * 119.95442 * 0.27476 * 11 10 9 37 37 H 1.07998 * 119.93699 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.98469 * 180.02562 * 13 12 11 39 39 H 0.97003 * 120.00870 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.06442 * 359.70291 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1923 2.1635 -1.3016 5 6 2.3347 2.0197 1.1494 6 6 2.2351 1.2572 2.4454 7 6 2.7657 3.4244 1.1547 8 8 2.7398 4.0720 0.1265 9 8 3.1898 3.9950 2.3002 10 6 3.6571 5.2686 2.2189 11 6 5.0188 5.5172 2.3266 12 6 5.4945 6.8123 2.2503 13 6 4.6173 7.8636 2.0658 14 6 3.2540 7.6208 1.9574 15 8 2.3920 8.6538 1.7766 16 6 1.0756 8.3627 1.7928 17 1 0.7468 7.3618 2.0311 18 6 0.1441 9.3480 1.5037 19 7 0.5445 10.5671 1.2139 20 14 -1.6797 8.9448 1.5270 21 1 -2.0652 8.4730 2.8812 22 1 -2.4601 10.1616 1.1865 23 1 -1.9639 7.8794 0.5322 24 6 2.7741 6.3206 2.0342 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.2176 2.5222 -1.3915 31 1 1.9673 1.4941 -2.1318 32 1 1.5075 3.0113 -1.3226 33 1 2.4360 1.9299 3.2792 34 1 1.2322 0.8423 2.5467 35 1 2.9650 0.4477 2.4477 36 1 5.7069 4.6974 2.4706 37 1 6.5541 7.0031 2.3348 38 1 4.9917 8.8748 2.0061 39 1 -0.1072 11.2567 1.0119 40 1 1.7145 6.1292 1.9498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841344084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:58 Heat of formation + Delta-G solvation = -92.744852 kcal Electronic energy + Delta-G solvation = -22798.648012 eV Core-core repulsion = 19351.063149 eV Total energy + Delta-G solvation = -3447.584863 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.34793 -40.66931 -39.19018 -37.73876 -37.19216 -34.37878 -32.81406 -31.36285 -30.95783 -30.57355 -27.52409 -26.35509 -25.62755 -24.12667 -23.40485 -22.23671 -20.14297 -19.76218 -19.33802 -17.96328 -17.50176 -17.01112 -16.90658 -16.19917 -16.12836 -15.82382 -15.64030 -15.23107 -14.98605 -14.70649 -14.55158 -14.14135 -13.82548 -13.76485 -13.58938 -13.30754 -13.14972 -12.96735 -12.91319 -12.76747 -12.60555 -12.55908 -12.33844 -12.21213 -11.91913 -11.76148 -11.58684 -11.16727 -10.87986 -9.97941 -9.81122 -9.18692 -8.56104 -6.25591 -0.02461 0.17289 0.52058 1.27089 1.37680 1.43644 1.71957 1.80159 2.10404 2.70065 3.03518 3.33978 3.55306 3.73184 3.88931 3.97105 4.14886 4.17263 4.28873 4.39571 4.45124 4.51359 4.62572 4.65910 4.72971 4.79813 4.85489 4.90201 4.95927 4.97658 5.05251 5.09228 5.17767 5.31425 5.35021 5.40330 5.43459 5.49161 5.54984 5.62753 5.90575 5.98856 6.75199 6.87359 7.62399 8.66090 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013333 B = 0.004876 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.504221 B = 5740.903354 C = 7241.615146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.009 4.009 4 C -0.124 4.124 5 C -0.194 4.194 6 C -0.103 4.103 7 C 0.482 3.518 8 O -0.522 6.522 9 O -0.292 6.292 10 C 0.115 3.885 11 C -0.192 4.192 12 C -0.046 4.046 13 C -0.195 4.195 14 C 0.128 3.872 15 O -0.220 6.220 16 C -0.420 4.420 17 H 0.088 0.912 18 C -0.014 4.014 19 N -0.912 5.912 20 Si 1.013 2.987 21 H -0.255 1.255 22 H -0.261 1.261 23 H -0.264 1.264 24 C -0.248 4.248 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.156 0.844 37 H 0.177 0.823 38 H 0.132 0.868 39 H 0.276 0.724 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.240 -23.406 -0.087 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.010 4.010 4 C -0.180 4.180 5 C -0.195 4.195 6 C -0.160 4.160 7 C 0.331 3.669 8 O -0.411 6.411 9 O -0.207 6.207 10 C 0.073 3.927 11 C -0.211 4.211 12 C -0.064 4.064 13 C -0.215 4.215 14 C 0.077 3.923 15 O -0.126 6.126 16 C -0.496 4.496 17 H 0.106 0.894 18 C -0.213 4.213 19 N -0.549 5.549 20 Si 0.832 3.168 21 H -0.180 1.180 22 H -0.185 1.185 23 H -0.189 1.189 24 C -0.268 4.268 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.173 0.827 37 H 0.195 0.805 38 H 0.150 0.850 39 H 0.086 0.914 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.171 -22.742 -0.470 22.967 hybrid contribution -0.927 0.833 -0.154 1.256 sum 2.244 -21.909 -0.624 22.032 Atomic orbital electron populations 1.21714 0.93395 1.03366 1.02024 1.20905 0.96889 0.89329 1.05645 1.22908 0.87661 0.97163 0.93249 1.21088 1.02254 0.99736 0.94963 1.20665 1.10857 0.88676 0.99349 1.20759 1.03879 0.99657 0.91678 1.22581 0.74228 0.89658 0.80415 1.90894 1.51341 1.65295 1.33615 1.84589 1.73560 1.26502 1.36089 1.18449 0.92698 0.80897 1.00620 1.21078 0.92076 0.98952 1.09004 1.21075 1.00552 0.89888 0.94838 1.20708 0.89540 1.01443 1.09764 1.19718 0.91778 0.87062 0.93756 1.83959 1.17134 1.31192 1.80311 1.21627 0.78894 0.98626 1.50408 0.89418 1.26519 1.05339 0.94239 0.95188 1.70140 1.37185 1.02731 1.44823 0.84748 0.73639 0.78596 0.79855 1.17955 1.18480 1.18863 1.21171 0.99970 0.92974 1.12723 0.93044 0.92972 0.89616 0.88263 0.88171 0.91836 0.89276 0.92219 0.92095 0.89466 0.88633 0.82682 0.80533 0.84973 0.91439 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.89 71.98 0.71 -1.03 16 2 C -0.09 -1.09 5.55 29.85 0.17 -0.92 16 3 C -0.01 -0.19 5.37 -17.60 -0.09 -0.28 16 4 C -0.12 -3.02 8.34 71.24 0.59 -2.42 16 5 C -0.19 -4.94 5.99 -18.74 -0.11 -5.05 16 6 C -0.10 -1.87 8.59 71.24 0.61 -1.26 16 7 C 0.48 17.46 7.66 70.10 0.54 18.00 16 8 O -0.52 -22.42 12.57 19.69 0.25 -22.17 16 9 O -0.29 -11.10 9.04 -0.81 -0.01 -11.11 16 10 C 0.11 4.86 5.24 22.50 0.12 4.98 16 11 C -0.19 -6.76 9.99 22.40 0.22 -6.54 16 12 C -0.05 -1.55 10.03 22.24 0.22 -1.33 16 13 C -0.20 -8.46 9.99 22.41 0.22 -8.24 16 14 C 0.13 6.82 6.65 22.56 0.15 6.97 16 15 O -0.22 -13.84 9.76 -22.69 -0.22 -14.06 16 16 C -0.42 -25.99 9.44 67.92 0.64 -25.35 16 17 H 0.09 5.21 5.29 -2.91 -0.02 5.20 16 18 C -0.01 -0.83 5.49 84.83 0.47 -0.37 16 19 N -0.91 -56.97 13.67 21.61 0.30 -56.68 16 20 Si 1.01 44.82 29.55 68.60 2.03 46.85 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 24 C -0.25 -12.57 8.47 22.49 0.19 -12.38 16 25 H 0.05 0.71 7.85 -2.39 -0.02 0.69 16 26 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.10 0.85 8.10 -2.39 -0.02 0.83 16 29 H 0.10 0.87 6.45 -2.39 -0.02 0.86 16 30 H 0.06 1.77 7.32 -2.39 -0.02 1.75 16 31 H 0.09 1.54 7.97 -2.39 -0.02 1.52 16 32 H 0.06 1.82 7.16 -2.39 -0.02 1.81 16 33 H 0.06 1.30 7.21 -2.38 -0.02 1.28 16 34 H 0.09 1.25 7.56 -2.39 -0.02 1.23 16 35 H 0.10 1.22 7.76 -2.39 -0.02 1.20 16 36 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 37 H 0.18 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.13 5.38 8.06 -2.91 -0.02 5.35 16 39 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 40 H 0.11 5.74 5.71 -2.91 -0.02 5.73 16 Total: -1.00 -78.95 339.75 8.04 -70.91 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 1.05 Total: 21.47 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 4.65 Total: -35.21 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.30 Total: -56.68 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: 0.02 Total: -47.34 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -78.95 8.04 -70.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.830 kcal (2) G-P(sol) polarization free energy of solvation -78.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds