Wall clock time and date at job start Tue Mar 31 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47384 * 2 1 4 4 C 1.50703 * 109.47447 * 120.00470 * 2 1 3 5 5 O 1.20827 * 120.00312 * 125.02561 * 4 2 1 6 6 O 1.34270 * 119.99586 * 305.03140 * 4 2 1 7 7 C 1.35918 * 116.99711 * 175.08322 * 6 4 2 8 8 C 1.38825 * 120.02135 * 245.98571 * 7 6 4 9 9 C 1.38190 * 120.08294 * 180.25696 * 8 7 6 10 10 C 1.38152 * 120.12344 * 359.44471 * 9 8 7 11 11 C 1.38890 * 120.03879 * 0.55088 * 10 9 8 12 12 O 1.35755 * 120.04168 * 179.70479 * 11 10 9 13 13 C 1.34825 * 117.00105 * 185.95533 * 12 11 10 14 14 H 1.07998 * 120.00053 * 5.54551 * 13 12 11 15 15 C 1.38654 * 119.99991 * 185.55036 * 13 12 11 16 16 N 1.31560 * 119.99797 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00144 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47457 * 59.99787 * 17 15 13 19 19 H 1.48495 * 109.47343 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47302 * 299.99725 * 17 15 13 21 21 C 1.38572 * 120.02218 * 65.96390 * 7 6 4 22 22 C 1.53001 * 109.46894 * 240.00288 * 2 1 3 23 23 C 1.52999 * 117.50001 * 133.75413 * 22 2 1 24 24 C 1.52998 * 117.49941 * 65.09302 * 22 2 1 25 25 H 1.09000 * 109.46527 * 299.99592 * 1 2 3 26 26 H 1.08993 * 109.47233 * 59.99679 * 1 2 3 27 27 H 1.08997 * 109.46956 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47285 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47319 * 300.00664 * 3 2 1 30 30 H 1.09003 * 109.47163 * 60.00190 * 3 2 1 31 31 H 1.07998 * 119.95829 * 359.97351 * 8 7 6 32 32 H 1.08001 * 119.93620 * 179.70452 * 9 8 7 33 33 H 1.07997 * 119.97643 * 180.28330 * 10 9 8 34 34 H 0.97004 * 119.99524 * 180.02562 * 16 15 13 35 35 H 1.08003 * 120.06209 * 359.97438 * 21 7 6 36 36 H 1.08999 * 115.54900 * 279.42511 * 22 2 1 37 37 H 1.08997 * 117.49736 * 0.02562 * 23 22 2 38 38 H 1.09003 * 117.49846 * 145.01918 * 23 22 2 39 39 H 1.09004 * 117.50052 * 214.97975 * 24 22 2 40 40 H 1.09001 * 117.50203 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.8000 -1.6373 1.1218 6 8 1.6269 -0.3137 2.4473 7 6 2.0353 -1.0598 3.5075 8 6 1.1061 -1.7679 4.2575 9 6 1.5193 -2.5226 5.3389 10 6 2.8591 -2.5842 5.6700 11 6 3.7931 -1.8779 4.9231 12 8 5.1090 -1.9336 5.2521 13 6 5.9461 -1.1300 4.5657 14 1 5.5506 -0.4172 3.8572 15 6 7.3148 -1.2187 4.7692 16 7 7.7964 -2.0868 5.6325 17 14 8.4747 -0.1058 3.8177 18 1 8.1583 1.3133 4.1199 19 1 9.8759 -0.3964 4.2141 20 1 8.3120 -0.3500 2.3619 21 6 3.3794 -1.1146 3.8401 22 6 2.0399 -0.7212 -1.2493 23 6 3.1603 -0.0489 -2.0453 24 6 1.7365 -0.0834 -2.6065 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 0.0586 -1.7251 3.9984 32 1 0.7938 -3.0687 5.9236 33 1 3.1799 -3.1785 6.5128 34 1 8.7540 -2.1485 5.7751 35 1 4.1037 -0.5650 3.2572 36 1 2.0448 -1.8098 -1.1946 37 1 3.5343 0.9070 -1.6788 38 1 3.9020 -0.6952 -2.5147 39 1 1.5422 -0.7524 -3.4449 40 1 1.1740 0.8502 -2.6094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841344297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:43 Heat of formation + Delta-G solvation = -55.553896 kcal Electronic energy + Delta-G solvation = -23183.338552 eV Core-core repulsion = 19737.366410 eV Total energy + Delta-G solvation = -3445.972142 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.14444 -39.19476 -38.30708 -36.72441 -35.68295 -33.37188 -32.29195 -29.64392 -28.89768 -27.66619 -25.48923 -24.90542 -23.39216 -22.40824 -21.68875 -20.92576 -18.98167 -18.26125 -17.66790 -17.08536 -16.30253 -15.95714 -15.34071 -15.12438 -14.82272 -14.34006 -14.17163 -13.90093 -13.58995 -13.17724 -13.14144 -12.88107 -12.53150 -12.37341 -12.27422 -11.89356 -11.76498 -11.56068 -11.27398 -11.23464 -11.03285 -11.01753 -10.83279 -10.55255 -10.50091 -10.31869 -10.21686 -10.01554 -9.52328 -8.85773 -8.12176 -7.33796 -6.47371 -4.06372 1.79184 2.22781 2.40627 3.01394 3.12405 3.15128 3.16625 3.70292 3.95557 4.31328 4.46105 4.58844 4.70938 4.83164 4.89161 5.02598 5.08223 5.18434 5.24235 5.38917 5.46999 5.57578 5.60468 5.63081 5.68979 5.73892 5.80788 5.96648 5.98030 5.98247 6.03210 6.13629 6.17238 6.35137 6.58296 6.91877 7.03938 7.10024 7.15494 7.33839 7.62204 7.96278 8.20483 8.97743 9.64221 10.70123 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.005347 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.422496 B = 5234.990590 C = 6857.888677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.017 4.017 3 C -0.149 4.149 4 C 0.460 3.540 5 O -0.476 6.476 6 O -0.293 6.293 7 C 0.119 3.881 8 C -0.213 4.213 9 C -0.065 4.065 10 C -0.190 4.190 11 C 0.163 3.837 12 O -0.170 6.170 13 C -0.391 4.391 14 H 0.089 0.911 15 C 0.042 3.958 16 N -0.860 5.860 17 Si 0.939 3.061 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.269 1.269 21 C -0.230 4.230 22 C -0.139 4.139 23 C -0.178 4.178 24 C -0.172 4.172 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.271 0.729 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.429 5.908 -12.375 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.019 4.019 3 C -0.206 4.206 4 C 0.302 3.698 5 O -0.359 6.359 6 O -0.208 6.208 7 C 0.078 3.922 8 C -0.232 4.232 9 C -0.083 4.083 10 C -0.209 4.209 11 C 0.109 3.891 12 O -0.073 6.073 13 C -0.467 4.467 14 H 0.107 0.893 15 C -0.163 4.163 16 N -0.494 5.494 17 Si 0.764 3.236 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.194 1.194 21 C -0.250 4.250 22 C -0.157 4.157 23 C -0.215 4.215 24 C -0.209 4.209 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.780 5.407 -12.132 18.432 hybrid contribution 0.740 0.436 -0.488 0.988 sum -12.040 5.843 -12.620 18.395 Atomic orbital electron populations 1.21836 0.91380 1.03062 1.03301 1.19930 0.97604 0.95893 0.88433 1.22033 1.02146 0.92921 1.03471 1.23829 0.78990 0.82501 0.84450 1.90731 1.31267 1.27578 1.86315 1.84505 1.69693 1.52348 1.14299 1.18283 0.92588 0.94365 0.86918 1.20410 0.98371 1.03385 1.01028 1.20476 0.94692 0.97269 0.95876 1.20310 0.91743 1.05837 1.02999 1.19148 0.86121 0.92501 0.91338 1.84009 1.11540 1.56978 1.54788 1.21251 0.86933 1.15448 1.23116 0.89329 1.25276 0.96368 0.97605 0.97019 1.70028 1.14053 1.33341 1.32005 0.85804 0.78766 0.79540 0.79535 1.19395 1.20094 1.19403 1.21219 0.94779 1.07082 1.01882 1.22072 1.03977 0.99680 0.89948 1.23168 0.91826 1.03040 1.03484 1.22995 0.99249 1.02667 0.95983 0.90923 0.91034 0.91930 0.91361 0.90844 0.90843 0.86715 0.85990 0.85923 0.91865 0.85166 0.86749 0.87996 0.88617 0.88610 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.25 37.16 0.31 -1.03 16 2 C -0.02 -0.21 0.82 -155.66 -0.13 -0.34 16 3 C -0.15 -1.56 7.11 37.15 0.26 -1.29 16 4 C 0.46 7.98 6.37 36.01 0.23 8.21 16 5 O -0.48 -10.07 14.86 -18.75 -0.28 -10.35 16 6 O -0.29 -5.36 9.78 -23.61 -0.23 -5.59 16 7 C 0.12 2.49 5.46 -39.24 -0.21 2.27 16 8 C -0.21 -3.95 9.99 -39.38 -0.39 -4.35 16 9 C -0.06 -1.18 10.03 -39.63 -0.40 -1.58 16 10 C -0.19 -4.08 9.99 -39.37 -0.39 -4.48 16 11 C 0.16 4.13 6.64 -39.13 -0.26 3.87 16 12 O -0.17 -4.99 9.76 0.05 0.00 -4.99 16 13 C -0.39 -11.33 9.44 30.89 0.29 -11.04 16 14 H 0.09 2.43 5.30 -52.49 -0.28 2.15 16 15 C 0.04 1.18 5.49 -17.51 -0.10 1.09 16 16 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 17 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 C -0.23 -5.50 7.99 -39.25 -0.31 -5.81 16 22 C -0.14 -1.62 4.55 -90.62 -0.41 -2.03 16 23 C -0.18 -1.88 9.66 -26.69 -0.26 -2.14 16 24 C -0.17 -1.48 9.44 -26.69 -0.25 -1.73 16 25 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 26 H 0.07 0.53 7.64 -51.93 -0.40 0.13 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.78 6.74 -51.93 -0.35 0.43 16 29 H 0.07 0.58 6.96 -51.93 -0.36 0.22 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.13 3.25 5.72 -52.48 -0.30 2.95 16 36 H 0.11 1.52 7.73 -51.93 -0.40 1.12 16 37 H 0.10 1.02 5.89 -51.93 -0.31 0.72 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.69 7.08 -51.93 -0.37 0.32 16 LS Contribution 336.32 15.07 5.07 5.07 Total: -1.00 -32.94 336.32 -7.00 -39.94 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.27 Total: 5.01 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.03 Total: -20.38 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.76 Total: -24.78 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.51 Total: -20.94 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.94 -7.00 -39.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.609 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds