Wall clock time and date at job start Tue Mar 31 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47384 * 2 1 4 4 C 1.50703 * 109.47447 * 120.00470 * 2 1 3 5 5 O 1.20827 * 120.00312 * 125.02561 * 4 2 1 6 6 O 1.34270 * 119.99586 * 305.03140 * 4 2 1 7 7 C 1.35918 * 116.99711 * 175.08322 * 6 4 2 8 8 C 1.38825 * 120.02135 * 245.98571 * 7 6 4 9 9 C 1.38190 * 120.08294 * 180.25696 * 8 7 6 10 10 C 1.38152 * 120.12344 * 359.44471 * 9 8 7 11 11 C 1.38890 * 120.03879 * 0.55088 * 10 9 8 12 12 O 1.35755 * 120.04168 * 179.70479 * 11 10 9 13 13 C 1.34825 * 117.00105 * 185.95533 * 12 11 10 14 14 H 1.07998 * 120.00053 * 5.54551 * 13 12 11 15 15 C 1.38654 * 119.99991 * 185.55036 * 13 12 11 16 16 N 1.31560 * 119.99797 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00144 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47457 * 59.99787 * 17 15 13 19 19 H 1.48495 * 109.47343 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47302 * 299.99725 * 17 15 13 21 21 C 1.38572 * 120.02218 * 65.96390 * 7 6 4 22 22 C 1.53001 * 109.46894 * 240.00288 * 2 1 3 23 23 C 1.52999 * 117.50001 * 133.75413 * 22 2 1 24 24 C 1.52998 * 117.49941 * 65.09302 * 22 2 1 25 25 H 1.09000 * 109.46527 * 299.99592 * 1 2 3 26 26 H 1.08993 * 109.47233 * 59.99679 * 1 2 3 27 27 H 1.08997 * 109.46956 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47285 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47319 * 300.00664 * 3 2 1 30 30 H 1.09003 * 109.47163 * 60.00190 * 3 2 1 31 31 H 1.07998 * 119.95829 * 359.97351 * 8 7 6 32 32 H 1.08001 * 119.93620 * 179.70452 * 9 8 7 33 33 H 1.07997 * 119.97643 * 180.28330 * 10 9 8 34 34 H 0.97004 * 119.99524 * 180.02562 * 16 15 13 35 35 H 1.08003 * 120.06209 * 359.97438 * 21 7 6 36 36 H 1.08999 * 115.54900 * 279.42511 * 22 2 1 37 37 H 1.08997 * 117.49736 * 0.02562 * 23 22 2 38 38 H 1.09003 * 117.49846 * 145.01918 * 23 22 2 39 39 H 1.09004 * 117.50052 * 214.97975 * 24 22 2 40 40 H 1.09001 * 117.50203 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.8000 -1.6373 1.1218 6 8 1.6269 -0.3137 2.4473 7 6 2.0353 -1.0598 3.5075 8 6 1.1061 -1.7679 4.2575 9 6 1.5193 -2.5226 5.3389 10 6 2.8591 -2.5842 5.6700 11 6 3.7931 -1.8779 4.9231 12 8 5.1090 -1.9336 5.2521 13 6 5.9461 -1.1300 4.5657 14 1 5.5506 -0.4172 3.8572 15 6 7.3148 -1.2187 4.7692 16 7 7.7964 -2.0868 5.6325 17 14 8.4747 -0.1058 3.8177 18 1 8.1583 1.3133 4.1199 19 1 9.8759 -0.3964 4.2141 20 1 8.3120 -0.3500 2.3619 21 6 3.3794 -1.1146 3.8401 22 6 2.0399 -0.7212 -1.2493 23 6 3.1603 -0.0489 -2.0453 24 6 1.7365 -0.0834 -2.6065 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 0.0586 -1.7251 3.9984 32 1 0.7938 -3.0687 5.9236 33 1 3.1799 -3.1785 6.5128 34 1 8.7540 -2.1485 5.7751 35 1 4.1037 -0.5650 3.2572 36 1 2.0448 -1.8098 -1.1946 37 1 3.5343 0.9070 -1.6788 38 1 3.9020 -0.6952 -2.5147 39 1 1.5422 -0.7524 -3.4449 40 1 1.1740 0.8502 -2.6094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841344297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:42 Heat of formation + Delta-G solvation = -74.406320 kcal Electronic energy + Delta-G solvation = -23184.156055 eV Core-core repulsion = 19737.366410 eV Total energy + Delta-G solvation = -3446.789644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.57917 -40.76760 -39.65113 -38.26752 -37.35463 -34.41382 -34.23533 -31.33538 -30.65873 -28.45791 -27.52561 -26.06446 -24.68728 -23.43457 -23.15072 -22.45325 -20.20222 -20.11691 -19.37793 -18.19711 -17.90523 -17.46629 -16.90794 -16.54822 -16.12992 -16.04679 -15.65441 -15.46270 -15.15820 -14.70912 -14.56345 -13.97474 -13.75093 -13.71168 -13.37969 -13.19201 -13.04720 -12.99514 -12.76960 -12.58619 -12.56522 -12.21948 -12.04027 -11.98719 -11.85765 -11.68870 -11.44843 -11.26384 -10.95057 -10.88015 -9.80783 -9.18095 -8.56530 -6.25806 0.12467 0.52382 1.02589 1.26223 1.36952 1.42857 1.65503 2.09896 2.68743 2.87050 3.03683 3.32651 3.39795 3.53234 3.82626 3.91963 3.97181 4.05119 4.15747 4.20848 4.29267 4.37328 4.49133 4.62422 4.69432 4.78868 4.81271 4.87714 4.91637 4.93960 4.96621 4.98096 5.13524 5.26427 5.28133 5.29499 5.31907 5.42607 5.49748 5.53326 5.90360 5.97983 6.71491 6.86994 7.62291 8.65687 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.005347 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.422496 B = 5234.990590 C = 6857.888677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.010 4.010 3 C -0.148 4.148 4 C 0.456 3.544 5 O -0.524 6.524 6 O -0.287 6.287 7 C 0.110 3.890 8 C -0.190 4.190 9 C -0.046 4.046 10 C -0.197 4.197 11 C 0.125 3.875 12 O -0.221 6.221 13 C -0.418 4.418 14 H 0.087 0.913 15 C -0.015 4.015 16 N -0.912 5.912 17 Si 1.012 2.988 18 H -0.254 1.254 19 H -0.261 1.261 20 H -0.265 1.265 21 C -0.249 4.249 22 C -0.164 4.164 23 C -0.195 4.195 24 C -0.134 4.134 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.160 0.840 32 H 0.178 0.822 33 H 0.131 0.869 34 H 0.276 0.724 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.739 7.403 -14.202 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.011 4.011 3 C -0.205 4.205 4 C 0.300 3.700 5 O -0.410 6.410 6 O -0.202 6.202 7 C 0.069 3.931 8 C -0.209 4.209 9 C -0.064 4.064 10 C -0.216 4.216 11 C 0.074 3.926 12 O -0.127 6.127 13 C -0.494 4.494 14 H 0.105 0.895 15 C -0.214 4.214 16 N -0.549 5.549 17 Si 0.831 3.169 18 H -0.178 1.178 19 H -0.185 1.185 20 H -0.190 1.190 21 C -0.269 4.269 22 C -0.183 4.183 23 C -0.232 4.232 24 C -0.170 4.170 25 H 0.094 0.906 26 H 0.123 0.877 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.196 0.804 33 H 0.149 0.851 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.127 0.873 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.159 6.915 -13.965 22.449 hybrid contribution 1.431 -0.097 0.040 1.435 sum -14.728 6.818 -13.925 21.385 Atomic orbital electron populations 1.21889 0.88803 1.03391 1.05112 1.20155 0.99449 0.96031 0.85478 1.22094 1.01210 0.91856 1.05316 1.25175 0.77790 0.81967 0.85025 1.90716 1.33511 1.30032 1.86699 1.84543 1.69256 1.52080 1.14311 1.18534 0.91805 0.94691 0.88108 1.21041 1.00027 1.00434 0.99354 1.21096 0.93894 0.96040 0.95359 1.20708 0.92811 1.05226 1.02851 1.19753 0.85620 0.94234 0.92951 1.83958 1.13308 1.58742 1.56677 1.21604 0.87850 1.16332 1.23618 0.89516 1.26524 0.97643 0.99260 0.97931 1.70148 1.14657 1.35786 1.34303 0.84758 0.76566 0.77799 0.77793 1.17815 1.18460 1.18961 1.21165 0.96107 1.07730 1.01881 1.22018 1.06194 0.98527 0.91538 1.23261 0.92890 1.03001 1.04026 1.23133 0.97006 1.03172 0.93732 0.90614 0.87709 0.92364 0.93018 0.87159 0.90799 0.82198 0.80440 0.85084 0.91461 0.87805 0.89328 0.87562 0.89445 0.87286 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.25 71.98 0.59 -1.56 16 2 C -0.01 -0.23 0.82 -52.93 -0.04 -0.27 16 3 C -0.15 -2.78 7.11 71.98 0.51 -2.27 16 4 C 0.46 15.87 6.37 71.24 0.45 16.33 16 5 O -0.52 -23.19 14.86 21.96 0.33 -22.87 16 6 O -0.29 -10.31 9.78 4.55 0.04 -10.26 16 7 C 0.11 4.54 5.46 22.49 0.12 4.67 16 8 C -0.19 -6.43 9.99 22.40 0.22 -6.21 16 9 C -0.05 -1.53 10.03 22.24 0.22 -1.30 16 10 C -0.20 -8.47 9.99 22.41 0.22 -8.25 16 11 C 0.13 6.68 6.64 22.56 0.15 6.83 16 12 O -0.22 -13.93 9.76 -22.75 -0.22 -14.15 16 13 C -0.42 -25.98 9.44 67.92 0.64 -25.34 16 14 H 0.09 5.18 5.30 -2.91 -0.02 5.16 16 15 C -0.01 -0.88 5.49 84.83 0.47 -0.42 16 16 N -0.91 -57.17 13.67 21.61 0.30 -56.88 16 17 Si 1.01 45.00 29.55 68.60 2.03 47.03 16 18 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 21 C -0.25 -12.51 7.99 22.49 0.18 -12.33 16 22 C -0.16 -3.67 4.55 -10.79 -0.05 -3.72 16 23 C -0.19 -3.90 9.66 30.62 0.30 -3.60 16 24 C -0.13 -1.84 9.44 30.62 0.29 -1.55 16 25 H 0.07 1.18 8.03 -2.39 -0.02 1.16 16 26 H 0.10 1.00 7.64 -2.39 -0.02 0.98 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 1.14 6.74 -2.39 -0.02 1.13 16 29 H 0.11 1.26 6.96 -2.39 -0.02 1.24 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 32 H 0.18 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.13 5.32 8.06 -2.91 -0.02 5.29 16 34 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.10 5.65 5.72 -2.91 -0.02 5.63 16 36 H 0.09 2.42 7.73 -2.39 -0.02 2.40 16 37 H 0.11 2.01 5.89 -2.39 -0.01 1.99 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.12 1.07 7.08 -2.39 -0.02 1.05 16 Total: -1.00 -80.14 336.32 7.80 -72.34 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 1.05 Total: 23.78 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 4.28 Total: -38.99 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.30 Total: -56.88 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: 0.15 Total: -47.28 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -80.14 7.80 -72.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.066 kcal (2) G-P(sol) polarization free energy of solvation -80.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds