Wall clock time and date at job start Tue Mar 31 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 110.43357 * 2 1 4 4 C 1.54266 * 110.48841 * 122.53644 * 2 1 3 5 5 C 1.53875 * 106.59911 * 142.42266 * 4 2 1 6 6 C 1.54270 * 106.59999 * 0.02562 * 5 4 2 7 7 H 1.08994 * 110.48774 * 95.19659 * 6 5 4 8 8 C 1.50701 * 110.48782 * 217.71264 * 6 5 4 9 9 O 1.20823 * 120.00454 * 118.53995 * 8 6 5 10 10 O 1.34268 * 119.99505 * 298.54325 * 8 6 5 11 11 C 1.35924 * 116.99802 * 185.33823 * 10 8 6 12 12 C 1.38827 * 120.02512 * 246.76566 * 11 10 8 13 13 C 1.38185 * 120.08131 * 180.02562 * 12 11 10 14 14 C 1.38153 * 120.12658 * 0.02562 * 13 12 11 15 15 C 1.38899 * 120.03921 * 359.96669 * 14 13 12 16 16 O 1.35755 * 120.04007 * 179.97438 * 15 14 13 17 17 C 1.34832 * 116.99999 * 185.94720 * 16 15 14 18 18 H 1.08004 * 119.99874 * 354.89339 * 17 16 15 19 19 C 1.38647 * 119.99921 * 174.89995 * 17 16 15 20 20 N 1.31562 * 120.00188 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99965 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47081 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47181 * 119.99417 * 21 19 17 24 24 H 1.48498 * 109.46981 * 239.99813 * 21 19 17 25 25 C 1.38576 * 120.01563 * 66.78927 * 11 10 8 26 26 C 1.54885 * 110.60260 * 237.38198 * 2 1 3 27 27 H 1.08997 * 109.47530 * 298.90914 * 1 2 3 28 28 H 1.09002 * 109.47315 * 58.91395 * 1 2 3 29 29 H 1.09004 * 109.46773 * 178.91402 * 1 2 3 30 30 H 1.09005 * 110.02716 * 23.14321 * 4 2 1 31 31 H 1.08993 * 110.07634 * 261.73266 * 4 2 1 32 32 H 1.08997 * 110.03614 * 240.72193 * 5 4 2 33 33 H 1.09007 * 110.07395 * 119.30859 * 5 4 2 34 34 H 1.07997 * 119.95590 * 0.02866 * 12 11 10 35 35 H 1.07997 * 119.94086 * 179.97438 * 13 12 11 36 36 H 1.07998 * 119.98073 * 179.69623 * 14 13 12 37 37 H 0.96995 * 119.99752 * 180.02562 * 20 19 17 38 38 H 1.08001 * 120.06832 * 359.97438 * 25 11 10 39 39 H 1.09007 * 110.75507 * 85.01065 * 26 2 1 40 40 H 1.08998 * 110.75636 * 321.63720 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0699 -0.7772 1.2183 5 6 3.3185 -1.5368 0.7369 6 6 3.4941 -1.1942 -0.7570 7 1 4.1937 -0.3673 -0.8790 8 6 3.9686 -2.4022 -1.5230 9 8 3.2883 -2.8606 -2.4101 10 8 5.1473 -2.9691 -1.2195 11 6 5.5677 -3.9845 -2.0193 12 6 5.6578 -5.2746 -1.5146 13 6 6.0856 -6.3077 -2.3266 14 6 6.4254 -6.0601 -3.6426 15 6 6.3371 -4.7713 -4.1529 16 8 6.6715 -4.5280 -5.4459 17 6 6.6819 -3.2396 -5.8434 18 1 6.3520 -2.4636 -5.1686 19 6 7.1159 -2.9111 -7.1186 20 7 7.5181 -3.8563 -7.9405 21 14 7.1296 -1.1262 -7.6696 22 1 6.6325 -0.2641 -6.5674 23 1 8.5158 -0.7280 -8.0233 24 1 6.2509 -0.9677 -8.8561 25 6 5.9072 -3.7324 -3.3390 26 6 2.0749 -0.7815 -1.2211 27 1 -0.3634 0.4968 0.8996 28 1 -0.3634 0.5306 -0.8801 29 1 -0.3633 -1.0275 -0.0195 30 1 1.3184 -1.4819 1.5745 31 1 2.3387 -0.0839 2.0152 32 1 3.1731 -2.6101 0.8595 33 1 4.1939 -1.2122 1.2995 34 1 5.3931 -5.4710 -0.4862 35 1 6.1552 -7.3104 -1.9315 36 1 6.7642 -6.8684 -4.2737 37 1 7.8221 -3.6264 -8.8324 38 1 5.8377 -2.7294 -3.7335 39 1 2.1279 -0.1379 -2.0993 40 1 1.4628 -1.6608 -1.4216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841344892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:50 Heat of formation + Delta-G solvation = -96.546033 kcal Electronic energy + Delta-G solvation = -22734.397367 eV Core-core repulsion = 19286.647673 eV Total energy + Delta-G solvation = -3447.749694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03691 -39.08582 -38.26288 -36.78852 -35.69867 -32.32041 -31.90498 -29.73046 -29.15038 -28.86318 -25.97630 -25.36596 -23.38924 -21.73687 -21.38072 -20.13042 -19.92136 -18.26837 -17.81985 -16.98245 -16.35840 -16.01891 -15.56470 -15.11837 -14.48960 -14.37218 -14.08928 -13.84144 -13.64487 -13.53894 -13.37339 -13.06602 -12.59321 -12.41129 -12.00929 -11.81679 -11.65761 -11.39936 -11.28141 -11.14685 -11.05414 -11.03845 -10.88160 -10.83065 -10.66276 -10.48527 -10.35309 -10.13979 -9.52368 -8.88371 -8.13745 -7.35253 -6.48986 -4.08317 1.77082 2.21295 2.40686 3.05860 3.12037 3.13438 3.17943 3.93887 4.20412 4.28822 4.45969 4.57231 4.94986 5.02019 5.03628 5.10801 5.15786 5.23572 5.26689 5.33957 5.37915 5.55877 5.59744 5.64733 5.76456 5.77888 5.78949 5.91666 6.00116 6.02641 6.03925 6.15486 6.20682 6.32630 6.56625 6.90186 7.01165 7.08951 7.13905 7.32763 7.60139 7.94881 8.18289 8.96255 9.62759 10.68658 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.004391 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.229164 B = 6374.793005 C = 7836.070313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.077 0.923 4 C -0.120 4.120 5 C -0.113 4.113 6 C -0.085 4.085 7 H 0.113 0.887 8 C 0.458 3.542 9 O -0.481 6.481 10 O -0.295 6.295 11 C 0.122 3.878 12 C -0.212 4.212 13 C -0.064 4.064 14 C -0.189 4.189 15 C 0.166 3.834 16 O -0.171 6.171 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.041 3.959 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.236 4.236 26 C -0.105 4.105 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.271 0.729 38 H 0.130 0.870 39 H 0.076 0.924 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.028 6.675 16.769 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.096 0.904 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.104 4.104 7 H 0.131 0.869 8 C 0.301 3.699 9 O -0.366 6.366 10 O -0.211 6.211 11 C 0.082 3.918 12 C -0.231 4.231 13 C -0.082 4.082 14 C -0.208 4.208 15 C 0.111 3.889 16 O -0.074 6.074 17 C -0.468 4.468 18 H 0.108 0.892 19 C -0.163 4.163 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.256 4.256 26 C -0.142 4.142 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.081 0.919 38 H 0.148 0.852 39 H 0.094 0.906 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.093 6.346 16.047 19.505 hybrid contribution 0.117 0.894 -0.395 0.984 sum -8.976 7.239 15.651 19.441 Atomic orbital electron populations 1.21790 0.94623 1.02069 1.01660 1.21979 0.95885 0.99304 0.94456 0.90436 1.22234 0.96892 0.98937 0.97680 1.22096 0.99002 1.01260 0.92664 1.21943 0.99129 0.93610 0.95717 0.86884 1.23911 0.79026 0.84465 0.82505 1.90719 1.54839 1.61321 1.29675 1.84521 1.36802 1.45946 1.53790 1.18268 0.98160 0.85928 0.89485 1.20427 1.11549 0.90649 1.00471 1.20484 0.97356 0.97722 0.92669 1.20326 1.09326 0.95245 0.95933 1.19111 0.91934 0.92700 0.85134 1.83996 1.74764 1.29248 1.19378 1.21361 1.45203 0.80918 0.99363 0.89187 1.25287 0.95931 1.00173 0.94934 1.70045 1.39599 1.32549 1.07225 0.85645 0.78402 0.80310 0.79088 1.19120 1.19969 1.19980 1.21192 1.10030 1.00991 0.93355 1.22573 0.92979 1.00924 0.97774 0.92630 0.92495 0.92445 0.91342 0.91394 0.91111 0.90355 0.86737 0.85973 0.85875 0.91949 0.85201 0.90571 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.12 37.15 0.34 -0.74 16 2 C -0.10 -0.81 3.45 -88.97 -0.31 -1.11 16 3 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.12 -0.94 6.37 -25.61 -0.16 -1.10 16 5 C -0.11 -1.08 6.34 -25.61 -0.16 -1.24 16 6 C -0.08 -1.01 3.37 -90.10 -0.30 -1.31 16 7 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 8 C 0.46 7.82 6.88 36.01 0.25 8.07 16 9 O -0.48 -9.94 15.08 -18.75 -0.28 -10.22 16 10 O -0.30 -5.42 10.02 -23.63 -0.24 -5.66 16 11 C 0.12 2.56 5.34 -39.24 -0.21 2.35 16 12 C -0.21 -3.97 9.99 -39.38 -0.39 -4.36 16 13 C -0.06 -1.17 10.03 -39.63 -0.40 -1.57 16 14 C -0.19 -4.07 9.99 -39.37 -0.39 -4.46 16 15 C 0.17 4.17 6.64 -39.13 -0.26 3.91 16 16 O -0.17 -4.99 9.76 0.03 0.00 -4.99 16 17 C -0.39 -11.29 9.49 30.88 0.29 -11.00 16 18 H 0.09 2.46 5.21 -52.48 -0.27 2.19 16 19 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 20 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 21 Si 0.94 20.93 29.55 -169.99 -5.02 15.90 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 25 C -0.24 -5.61 8.30 -39.25 -0.33 -5.94 16 26 C -0.11 -1.16 5.34 -24.73 -0.13 -1.29 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.52 7.84 -51.93 -0.41 0.11 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.74 7.83 -51.93 -0.41 0.33 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.13 3.19 5.64 -52.49 -0.30 2.89 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.06 7.45 -51.93 -0.39 0.67 16 LS Contribution 337.12 15.07 5.08 5.08 Total: -1.00 -32.69 337.12 -7.52 -40.21 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.56 Total: 3.06 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.26 Total: -18.74 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.76 Total: -24.63 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.52 Total: -20.87 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.69 -7.52 -40.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.337 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds