Wall clock time and date at job start Tue Mar 31 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 110.43357 * 2 1 4 4 C 1.54266 * 110.48841 * 122.53644 * 2 1 3 5 5 C 1.53875 * 106.59911 * 142.42266 * 4 2 1 6 6 C 1.54270 * 106.59999 * 0.02562 * 5 4 2 7 7 H 1.08994 * 110.48774 * 95.19659 * 6 5 4 8 8 C 1.50701 * 110.48782 * 217.71264 * 6 5 4 9 9 O 1.20823 * 120.00454 * 118.53995 * 8 6 5 10 10 O 1.34268 * 119.99505 * 298.54325 * 8 6 5 11 11 C 1.35924 * 116.99802 * 185.33823 * 10 8 6 12 12 C 1.38827 * 120.02512 * 246.76566 * 11 10 8 13 13 C 1.38185 * 120.08131 * 180.02562 * 12 11 10 14 14 C 1.38153 * 120.12658 * 0.02562 * 13 12 11 15 15 C 1.38899 * 120.03921 * 359.96669 * 14 13 12 16 16 O 1.35755 * 120.04007 * 179.97438 * 15 14 13 17 17 C 1.34832 * 116.99999 * 185.94720 * 16 15 14 18 18 H 1.08004 * 119.99874 * 354.89339 * 17 16 15 19 19 C 1.38647 * 119.99921 * 174.89995 * 17 16 15 20 20 N 1.31562 * 120.00188 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99965 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47081 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47181 * 119.99417 * 21 19 17 24 24 H 1.48498 * 109.46981 * 239.99813 * 21 19 17 25 25 C 1.38576 * 120.01563 * 66.78927 * 11 10 8 26 26 C 1.54885 * 110.60260 * 237.38198 * 2 1 3 27 27 H 1.08997 * 109.47530 * 298.90914 * 1 2 3 28 28 H 1.09002 * 109.47315 * 58.91395 * 1 2 3 29 29 H 1.09004 * 109.46773 * 178.91402 * 1 2 3 30 30 H 1.09005 * 110.02716 * 23.14321 * 4 2 1 31 31 H 1.08993 * 110.07634 * 261.73266 * 4 2 1 32 32 H 1.08997 * 110.03614 * 240.72193 * 5 4 2 33 33 H 1.09007 * 110.07395 * 119.30859 * 5 4 2 34 34 H 1.07997 * 119.95590 * 0.02866 * 12 11 10 35 35 H 1.07997 * 119.94086 * 179.97438 * 13 12 11 36 36 H 1.07998 * 119.98073 * 179.69623 * 14 13 12 37 37 H 0.96995 * 119.99752 * 180.02562 * 20 19 17 38 38 H 1.08001 * 120.06832 * 359.97438 * 25 11 10 39 39 H 1.09007 * 110.75507 * 85.01065 * 26 2 1 40 40 H 1.08998 * 110.75636 * 321.63720 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0699 -0.7772 1.2183 5 6 3.3185 -1.5368 0.7369 6 6 3.4941 -1.1942 -0.7570 7 1 4.1937 -0.3673 -0.8790 8 6 3.9686 -2.4022 -1.5230 9 8 3.2883 -2.8606 -2.4101 10 8 5.1473 -2.9691 -1.2195 11 6 5.5677 -3.9845 -2.0193 12 6 5.6578 -5.2746 -1.5146 13 6 6.0856 -6.3077 -2.3266 14 6 6.4254 -6.0601 -3.6426 15 6 6.3371 -4.7713 -4.1529 16 8 6.6715 -4.5280 -5.4459 17 6 6.6819 -3.2396 -5.8434 18 1 6.3520 -2.4636 -5.1686 19 6 7.1159 -2.9111 -7.1186 20 7 7.5181 -3.8563 -7.9405 21 14 7.1296 -1.1262 -7.6696 22 1 6.6325 -0.2641 -6.5674 23 1 8.5158 -0.7280 -8.0233 24 1 6.2509 -0.9677 -8.8561 25 6 5.9072 -3.7324 -3.3390 26 6 2.0749 -0.7815 -1.2211 27 1 -0.3634 0.4968 0.8996 28 1 -0.3634 0.5306 -0.8801 29 1 -0.3633 -1.0275 -0.0195 30 1 1.3184 -1.4819 1.5745 31 1 2.3387 -0.0839 2.0152 32 1 3.1731 -2.6101 0.8595 33 1 4.1939 -1.2122 1.2995 34 1 5.3931 -5.4710 -0.4862 35 1 6.1552 -7.3104 -1.9315 36 1 6.7642 -6.8684 -4.2737 37 1 7.8221 -3.6264 -8.8324 38 1 5.8377 -2.7294 -3.7335 39 1 2.1279 -0.1379 -2.0993 40 1 1.4628 -1.6608 -1.4216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841344892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:49 Heat of formation + Delta-G solvation = -114.691104 kcal Electronic energy + Delta-G solvation = -22735.184196 eV Core-core repulsion = 19286.647673 eV Total energy + Delta-G solvation = -3448.536524 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.49786 -40.71128 -39.47759 -38.26960 -37.36622 -34.37683 -32.75976 -31.33167 -30.68064 -29.91352 -27.56500 -26.75511 -24.64484 -23.43193 -22.76788 -21.19629 -20.85437 -20.15322 -19.48131 -18.35984 -17.66780 -17.50688 -16.91438 -16.76756 -16.11591 -15.86876 -15.67089 -15.42185 -14.77411 -14.74694 -14.55288 -14.27335 -14.04557 -13.77618 -13.38500 -13.19065 -13.01271 -12.81137 -12.66156 -12.53569 -12.30686 -12.19006 -11.99834 -11.86649 -11.82690 -11.72828 -11.51622 -11.44191 -11.21182 -10.88965 -9.82007 -9.18916 -8.56192 -6.25906 0.11116 0.51454 1.01740 1.28341 1.36705 1.46738 1.69349 2.10604 2.69643 3.02067 3.28255 3.36237 3.48066 3.67659 3.94909 4.01704 4.15711 4.23410 4.28419 4.32611 4.40445 4.47264 4.49754 4.63952 4.71556 4.78011 4.83806 4.90770 4.98367 4.99254 5.07595 5.13647 5.21651 5.31468 5.32580 5.34918 5.41114 5.48294 5.51608 5.55771 5.90962 5.96745 6.69652 6.87448 7.62422 8.66429 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.004391 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.229164 B = 6374.793005 C = 7836.070313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.093 0.907 4 C -0.115 4.115 5 C -0.109 4.109 6 C -0.082 4.082 7 H 0.133 0.867 8 C 0.456 3.544 9 O -0.524 6.524 10 O -0.291 6.291 11 C 0.113 3.887 12 C -0.192 4.192 13 C -0.046 4.046 14 C -0.197 4.197 15 C 0.129 3.871 16 O -0.221 6.221 17 C -0.420 4.420 18 H 0.090 0.910 19 C -0.015 4.015 20 N -0.912 5.912 21 Si 1.016 2.984 22 H -0.259 1.259 23 H -0.259 1.259 24 H -0.264 1.264 25 C -0.254 4.254 26 C -0.109 4.109 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.177 0.823 36 H 0.131 0.869 37 H 0.276 0.724 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 7.628 20.129 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.111 0.889 4 C -0.152 4.152 5 C -0.147 4.147 6 C -0.101 4.101 7 H 0.151 0.849 8 C 0.301 3.699 9 O -0.411 6.411 10 O -0.206 6.206 11 C 0.072 3.928 12 C -0.210 4.210 13 C -0.063 4.063 14 C -0.216 4.216 15 C 0.078 3.922 16 O -0.127 6.127 17 C -0.495 4.495 18 H 0.107 0.893 19 C -0.214 4.214 20 N -0.550 5.550 21 Si 0.835 3.165 22 H -0.183 1.183 23 H -0.184 1.184 24 H -0.188 1.188 25 C -0.274 4.274 26 C -0.146 4.146 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.175 0.825 35 H 0.195 0.805 36 H 0.149 0.851 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.801 7.287 19.473 22.986 hybrid contribution 0.242 0.445 -1.157 1.263 sum -9.560 7.732 18.316 22.061 Atomic orbital electron populations 1.21794 0.94080 1.01822 1.02450 1.21976 0.96315 0.99624 0.92973 0.88893 1.22236 0.95947 0.99161 0.97848 1.22147 1.00805 1.01045 0.90668 1.22223 0.99661 0.91441 0.96779 0.84906 1.25077 0.77835 0.84928 0.82046 1.90705 1.55844 1.62787 1.31754 1.84556 1.37545 1.45507 1.52976 1.18497 0.97909 0.87716 0.88682 1.21042 1.08315 0.89353 1.02338 1.21087 0.94330 1.00154 0.90746 1.20717 1.09218 0.93969 0.97740 1.19705 0.93234 0.94690 0.84599 1.83954 1.77620 1.29441 1.21666 1.21726 1.46309 0.81307 1.00204 0.89298 1.26550 0.95012 1.05382 0.94439 1.70162 1.41635 1.35205 1.07951 0.84585 0.79227 0.73919 0.78789 1.18265 1.18383 1.18849 1.21163 1.11417 0.99857 0.94967 1.22609 0.92382 1.00421 0.99210 0.90921 0.92686 0.93212 0.91051 0.89097 0.92117 0.88548 0.82483 0.80540 0.85060 0.91458 0.87431 0.91142 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.12 71.98 0.66 -1.20 16 2 C -0.09 -1.27 3.45 -9.72 -0.03 -1.30 16 3 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.11 -1.41 6.37 31.32 0.20 -1.21 16 5 C -0.11 -1.79 6.34 31.32 0.20 -1.59 16 6 C -0.08 -1.84 3.37 -10.45 -0.04 -1.87 16 7 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 8 C 0.46 15.48 6.88 71.24 0.49 15.97 16 9 O -0.52 -22.28 15.08 21.97 0.33 -21.95 16 10 O -0.29 -10.41 10.02 4.51 0.05 -10.36 16 11 C 0.11 4.66 5.34 22.49 0.12 4.78 16 12 C -0.19 -6.57 9.99 22.40 0.22 -6.34 16 13 C -0.05 -1.51 10.03 22.24 0.22 -1.29 16 14 C -0.20 -8.47 9.99 22.41 0.22 -8.25 16 15 C 0.13 6.79 6.64 22.56 0.15 6.94 16 16 O -0.22 -13.79 9.76 -22.82 -0.22 -14.01 16 17 C -0.42 -25.73 9.49 67.92 0.64 -25.09 16 18 H 0.09 5.23 5.21 -2.91 -0.02 5.22 16 19 C -0.02 -0.89 5.49 84.83 0.47 -0.43 16 20 N -0.91 -56.60 13.67 21.61 0.30 -56.31 16 21 Si 1.02 44.30 29.55 68.60 2.03 46.32 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 25 C -0.25 -12.59 8.30 22.49 0.19 -12.41 16 26 C -0.11 -2.31 5.34 31.89 0.17 -2.14 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.07 0.86 7.84 -2.38 -0.02 0.84 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 1.13 7.83 -2.39 -0.02 1.11 16 33 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.16 4.12 8.06 -2.91 -0.02 4.09 16 35 H 0.18 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.13 5.32 8.06 -2.91 -0.02 5.29 16 37 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.11 5.68 5.64 -2.91 -0.02 5.66 16 39 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.06 1.60 7.45 -2.39 -0.02 1.58 16 Total: -1.00 -77.61 337.12 7.40 -70.21 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 1.04 Total: 21.51 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 3.88 Total: -35.41 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.30 Total: -56.31 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: 0.15 Total: -46.33 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -77.61 7.40 -70.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.481 kcal (2) G-P(sol) polarization free energy of solvation -77.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds