Wall clock time and date at job start Tue Mar 31 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.53489 * 2 1 4 4 C 1.54890 * 110.48802 * 237.38595 * 2 1 3 5 5 C 1.54884 * 102.74788 * 203.37868 * 4 2 1 6 6 C 1.54262 * 104.19694 * 37.94055 * 5 4 2 7 7 H 1.09008 * 110.07079 * 95.69586 * 6 5 4 8 8 C 1.50700 * 110.03718 * 217.10374 * 6 5 4 9 9 O 1.20824 * 119.99877 * 117.16325 * 8 6 5 10 10 O 1.34262 * 120.00098 * 297.17146 * 8 6 5 11 11 C 1.35920 * 117.00414 * 175.07993 * 10 8 6 12 12 C 1.38823 * 120.02027 * 245.98878 * 11 10 8 13 13 C 1.38193 * 120.07868 * 180.22707 * 12 11 10 14 14 C 1.38147 * 120.12569 * 359.49105 * 13 12 11 15 15 C 1.38892 * 120.04025 * 0.51099 * 14 13 12 16 16 O 1.35749 * 120.04435 * 179.76677 * 15 14 13 17 17 C 1.34832 * 117.00227 * 185.89677 * 16 15 14 18 18 H 1.08000 * 119.99829 * 5.55256 * 17 16 15 19 19 C 1.38660 * 119.99894 * 185.54653 * 17 16 15 20 20 N 1.31552 * 120.00099 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99636 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47368 * 90.00460 * 21 19 17 23 23 H 1.48502 * 109.47011 * 210.00224 * 21 19 17 24 24 H 1.48499 * 109.47358 * 329.99911 * 21 19 17 25 25 C 1.38573 * 120.02288 * 65.96088 * 11 10 8 26 26 C 1.53875 * 106.60119 * 336.39079 * 6 5 4 27 27 H 1.08999 * 109.47066 * 297.38860 * 1 2 3 28 28 H 1.09001 * 109.46717 * 57.39223 * 1 2 3 29 29 H 1.08998 * 109.46660 * 177.38675 * 1 2 3 30 30 H 1.08995 * 110.75676 * 321.69701 * 4 2 1 31 31 H 1.09003 * 110.75099 * 85.06297 * 4 2 1 32 32 H 1.09007 * 110.48729 * 279.26719 * 5 4 2 33 33 H 1.08996 * 110.48602 * 156.62542 * 5 4 2 34 34 H 1.07996 * 119.96615 * 359.95124 * 12 11 10 35 35 H 1.08001 * 119.93654 * 179.74347 * 13 12 11 36 36 H 1.08001 * 119.98120 * 180.25236 * 14 13 12 37 37 H 0.97004 * 119.99849 * 179.97438 * 20 19 17 38 38 H 1.08001 * 120.05413 * 0.02562 * 25 11 10 39 39 H 1.08997 * 110.03309 * 119.27990 * 26 6 5 40 40 H 1.08994 * 110.03241 * 240.71119 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0722 -0.7820 -1.2221 5 6 3.4908 -1.1979 -0.7599 6 6 3.3166 -1.5404 0.7341 7 1 3.1696 -2.6135 0.8572 8 6 4.5281 -1.0932 1.5109 9 8 4.4180 -0.2494 2.3687 10 8 5.7296 -1.6324 1.2498 11 6 6.7964 -1.1130 1.9129 12 6 7.7870 -0.4371 1.2136 13 6 8.8745 0.0874 1.8859 14 6 8.9741 -0.0499 3.2569 15 6 7.9860 -0.7251 3.9617 16 8 8.0862 -0.8642 5.3084 17 6 7.1596 -1.6332 5.9150 18 1 6.4382 -2.1773 5.3235 19 6 7.1331 -1.7255 7.2983 20 7 8.0116 -1.0624 8.0188 21 14 5.8498 -2.7915 8.1387 22 1 6.3816 -4.1679 8.3052 23 1 5.5278 -2.2207 9.4713 24 1 4.6197 -2.8332 7.3078 25 6 6.8956 -1.2572 3.2876 26 6 2.0700 -0.7787 1.2173 27 1 -0.3633 0.4727 0.9125 28 1 -0.3633 0.5538 -0.8657 29 1 -0.3632 -1.0266 -0.0469 30 1 1.4582 -1.6600 -1.4222 31 1 2.1252 -0.1381 -2.1001 32 1 4.1899 -0.3706 -0.8826 33 1 3.8317 -2.0721 -1.3145 34 1 7.7100 -0.3249 0.1422 35 1 9.6459 0.6091 1.3390 36 1 9.8230 0.3645 3.7805 37 1 7.9928 -1.1267 8.9865 38 1 6.1258 -1.7826 3.8332 39 1 1.3177 -1.4821 1.5741 40 1 2.3412 -0.0857 2.0136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841344894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:55 Heat of formation + Delta-G solvation = -95.704936 kcal Electronic energy + Delta-G solvation = -22803.113218 eV Core-core repulsion = 19355.399997 eV Total energy + Delta-G solvation = -3447.713222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07096 -39.09475 -38.23361 -36.75750 -35.69554 -32.31107 -31.89135 -29.72473 -29.11637 -28.86054 -25.92726 -25.35170 -23.36892 -21.73252 -21.32931 -20.46276 -19.51561 -18.26819 -17.98351 -17.18153 -16.14203 -15.88432 -15.20555 -15.09493 -15.01635 -14.37090 -14.10704 -13.85763 -13.64474 -13.52905 -13.18170 -13.06521 -12.61042 -12.22020 -12.03881 -11.80552 -11.65618 -11.43572 -11.27543 -11.12761 -11.00838 -10.98092 -10.88939 -10.80508 -10.64353 -10.48674 -10.33483 -10.13203 -9.53202 -8.86647 -8.13067 -7.34418 -6.47969 -4.06972 1.79085 2.22164 2.38878 3.07787 3.12826 3.14969 3.18534 3.95213 4.23645 4.31269 4.47385 4.57794 4.94787 5.03444 5.07177 5.13246 5.20256 5.22072 5.30018 5.35980 5.40066 5.57874 5.60240 5.69080 5.76106 5.78151 5.80338 5.93393 5.96064 6.01362 6.15409 6.17377 6.22785 6.33636 6.57559 6.91449 7.03596 7.09501 7.14876 7.33423 7.61372 7.95764 8.18802 8.97282 9.63729 10.69612 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.004459 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.899280 B = 6277.599740 C = 7728.678407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.119 4.119 5 C -0.112 4.112 6 C -0.082 4.082 7 H 0.109 0.891 8 C 0.455 3.545 9 O -0.479 6.479 10 O -0.294 6.294 11 C 0.119 3.881 12 C -0.213 4.213 13 C -0.065 4.065 14 C -0.190 4.190 15 C 0.164 3.836 16 O -0.170 6.170 17 C -0.392 4.392 18 H 0.090 0.910 19 C 0.042 3.958 20 N -0.860 5.860 21 Si 0.940 3.060 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.230 4.230 26 C -0.121 4.121 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.271 0.729 38 H 0.131 0.869 39 H 0.075 0.925 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.029 -0.775 -16.944 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.095 0.905 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.101 4.101 7 H 0.128 0.872 8 C 0.298 3.702 9 O -0.363 6.363 10 O -0.209 6.209 11 C 0.078 3.922 12 C -0.232 4.232 13 C -0.083 4.083 14 C -0.209 4.209 15 C 0.109 3.891 16 O -0.073 6.073 17 C -0.468 4.468 18 H 0.107 0.893 19 C -0.163 4.163 20 N -0.494 5.494 21 Si 0.765 3.235 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.250 4.250 26 C -0.158 4.158 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.081 0.919 38 H 0.149 0.851 39 H 0.094 0.906 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.840 -0.394 -16.205 19.500 hybrid contribution -0.605 -0.587 0.579 1.022 sum -11.444 -0.980 -15.626 19.394 Atomic orbital electron populations 1.21791 0.94738 1.01792 1.01737 1.21993 0.95656 0.99607 0.94412 0.90514 1.22602 0.95397 1.00019 0.97666 1.22324 0.98028 1.02303 0.92312 1.21683 0.90099 1.02762 0.95596 0.87249 1.23958 0.84542 0.79643 0.82076 1.90713 1.85050 1.30084 1.30488 1.84521 1.15236 1.57807 1.63371 1.18287 0.86254 0.97212 0.90438 1.20409 0.97681 1.05769 0.99330 1.20475 0.96672 0.97947 0.93206 1.20313 1.00279 1.06714 0.93586 1.19140 0.92100 0.92455 0.85373 1.84009 1.48862 1.60902 1.13559 1.21308 1.11645 1.23802 0.90021 0.89258 1.25285 0.98048 0.97746 0.95217 1.70033 1.33655 1.39195 1.06527 0.85717 0.79750 0.79225 0.78826 1.19731 1.20082 1.19176 1.21221 1.01775 1.08925 0.93093 1.22367 0.94556 0.99705 0.99163 0.92522 0.92685 0.92558 0.90971 0.91144 0.90924 0.90163 0.86723 0.85983 0.85908 0.91905 0.85138 0.90637 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.12 37.16 0.34 -0.75 16 2 C -0.10 -0.90 3.46 -88.96 -0.31 -1.21 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.12 -0.94 6.33 -24.74 -0.16 -1.10 16 5 C -0.11 -1.07 6.34 -25.08 -0.16 -1.23 16 6 C -0.08 -0.97 3.41 -90.66 -0.31 -1.28 16 7 H 0.11 1.11 8.14 -51.92 -0.42 0.69 16 8 C 0.46 7.78 6.91 36.01 0.25 8.03 16 9 O -0.48 -9.98 14.28 -18.75 -0.27 -10.25 16 10 O -0.29 -5.39 10.03 -23.60 -0.24 -5.63 16 11 C 0.12 2.48 5.46 -39.24 -0.21 2.27 16 12 C -0.21 -3.95 9.99 -39.38 -0.39 -4.35 16 13 C -0.06 -1.18 10.03 -39.63 -0.40 -1.57 16 14 C -0.19 -4.08 9.99 -39.37 -0.39 -4.47 16 15 C 0.16 4.14 6.64 -39.13 -0.26 3.88 16 16 O -0.17 -5.00 9.76 0.05 0.00 -5.00 16 17 C -0.39 -11.34 9.44 30.89 0.29 -11.05 16 18 H 0.09 2.46 5.30 -52.49 -0.28 2.18 16 19 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16 20 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 21 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 C -0.23 -5.51 7.99 -39.25 -0.31 -5.82 16 26 C -0.12 -1.35 5.97 -25.61 -0.15 -1.50 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.07 0.49 8.04 -51.93 -0.42 0.08 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.77 7.85 -51.92 -0.41 0.36 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.13 3.26 5.72 -52.49 -0.30 2.96 16 39 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 40 H 0.09 1.29 6.40 -51.93 -0.33 0.96 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -32.77 335.76 -7.49 -40.26 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.50 Total: 3.33 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.27 Total: -19.08 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.76 Total: -24.76 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.50 Total: -20.88 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.77 -7.49 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.447 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds