Wall clock time and date at job start Tue Mar 31 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.53489 * 2 1 4 4 C 1.54890 * 110.48802 * 237.38595 * 2 1 3 5 5 C 1.54884 * 102.74788 * 203.37868 * 4 2 1 6 6 C 1.54262 * 104.19694 * 37.94055 * 5 4 2 7 7 H 1.09008 * 110.07079 * 95.69586 * 6 5 4 8 8 C 1.50700 * 110.03718 * 217.10374 * 6 5 4 9 9 O 1.20824 * 119.99877 * 117.16325 * 8 6 5 10 10 O 1.34262 * 120.00098 * 297.17146 * 8 6 5 11 11 C 1.35920 * 117.00414 * 175.07993 * 10 8 6 12 12 C 1.38823 * 120.02027 * 245.98878 * 11 10 8 13 13 C 1.38193 * 120.07868 * 180.22707 * 12 11 10 14 14 C 1.38147 * 120.12569 * 359.49105 * 13 12 11 15 15 C 1.38892 * 120.04025 * 0.51099 * 14 13 12 16 16 O 1.35749 * 120.04435 * 179.76677 * 15 14 13 17 17 C 1.34832 * 117.00227 * 185.89677 * 16 15 14 18 18 H 1.08000 * 119.99829 * 5.55256 * 17 16 15 19 19 C 1.38660 * 119.99894 * 185.54653 * 17 16 15 20 20 N 1.31552 * 120.00099 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99636 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47368 * 90.00460 * 21 19 17 23 23 H 1.48502 * 109.47011 * 210.00224 * 21 19 17 24 24 H 1.48499 * 109.47358 * 329.99911 * 21 19 17 25 25 C 1.38573 * 120.02288 * 65.96088 * 11 10 8 26 26 C 1.53875 * 106.60119 * 336.39079 * 6 5 4 27 27 H 1.08999 * 109.47066 * 297.38860 * 1 2 3 28 28 H 1.09001 * 109.46717 * 57.39223 * 1 2 3 29 29 H 1.08998 * 109.46660 * 177.38675 * 1 2 3 30 30 H 1.08995 * 110.75676 * 321.69701 * 4 2 1 31 31 H 1.09003 * 110.75099 * 85.06297 * 4 2 1 32 32 H 1.09007 * 110.48729 * 279.26719 * 5 4 2 33 33 H 1.08996 * 110.48602 * 156.62542 * 5 4 2 34 34 H 1.07996 * 119.96615 * 359.95124 * 12 11 10 35 35 H 1.08001 * 119.93654 * 179.74347 * 13 12 11 36 36 H 1.08001 * 119.98120 * 180.25236 * 14 13 12 37 37 H 0.97004 * 119.99849 * 179.97438 * 20 19 17 38 38 H 1.08001 * 120.05413 * 0.02562 * 25 11 10 39 39 H 1.08997 * 110.03309 * 119.27990 * 26 6 5 40 40 H 1.08994 * 110.03241 * 240.71119 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0722 -0.7820 -1.2221 5 6 3.4908 -1.1979 -0.7599 6 6 3.3166 -1.5404 0.7341 7 1 3.1696 -2.6135 0.8572 8 6 4.5281 -1.0932 1.5109 9 8 4.4180 -0.2494 2.3687 10 8 5.7296 -1.6324 1.2498 11 6 6.7964 -1.1130 1.9129 12 6 7.7870 -0.4371 1.2136 13 6 8.8745 0.0874 1.8859 14 6 8.9741 -0.0499 3.2569 15 6 7.9860 -0.7251 3.9617 16 8 8.0862 -0.8642 5.3084 17 6 7.1596 -1.6332 5.9150 18 1 6.4382 -2.1773 5.3235 19 6 7.1331 -1.7255 7.2983 20 7 8.0116 -1.0624 8.0188 21 14 5.8498 -2.7915 8.1387 22 1 6.3816 -4.1679 8.3052 23 1 5.5278 -2.2207 9.4713 24 1 4.6197 -2.8332 7.3078 25 6 6.8956 -1.2572 3.2876 26 6 2.0700 -0.7787 1.2173 27 1 -0.3633 0.4727 0.9125 28 1 -0.3633 0.5538 -0.8657 29 1 -0.3632 -1.0266 -0.0469 30 1 1.4582 -1.6600 -1.4222 31 1 2.1252 -0.1381 -2.1001 32 1 4.1899 -0.3706 -0.8826 33 1 3.8317 -2.0721 -1.3145 34 1 7.7100 -0.3249 0.1422 35 1 9.6459 0.6091 1.3390 36 1 9.8230 0.3645 3.7805 37 1 7.9928 -1.1267 8.9865 38 1 6.1258 -1.7826 3.8332 39 1 1.3177 -1.4821 1.5741 40 1 2.3412 -0.0857 2.0136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841344894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:54 Heat of formation + Delta-G solvation = -114.187268 kcal Electronic energy + Delta-G solvation = -22803.914673 eV Core-core repulsion = 19355.399997 eV Total energy + Delta-G solvation = -3448.514676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.52686 -40.72021 -39.49237 -38.22938 -37.36424 -34.38101 -32.76024 -31.31820 -30.67949 -29.89805 -27.55645 -26.71776 -24.64368 -23.42963 -22.70245 -21.42568 -20.55078 -20.14477 -19.57231 -18.62042 -17.71572 -17.43119 -16.90541 -16.29262 -16.18213 -15.95663 -15.61545 -15.57311 -15.02360 -14.69981 -14.57031 -14.33840 -13.84924 -13.76590 -13.36333 -13.01269 -12.87274 -12.82305 -12.76386 -12.56780 -12.34194 -12.21726 -11.97970 -11.88321 -11.75837 -11.65229 -11.53569 -11.44366 -11.30095 -10.88400 -9.81417 -9.18329 -8.56676 -6.26002 0.12439 0.52218 1.01421 1.27093 1.36551 1.44791 1.69871 2.10149 2.69607 3.03110 3.30786 3.37467 3.50604 3.65697 3.96620 3.99919 4.16196 4.26824 4.29163 4.34478 4.43081 4.48892 4.49989 4.68064 4.68676 4.77615 4.90963 4.95116 4.97553 4.99349 5.06030 5.12132 5.22044 5.29151 5.35133 5.37112 5.42631 5.49711 5.52894 5.54836 5.90441 5.97857 6.70511 6.87031 7.62304 8.65823 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.004459 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.899280 B = 6277.599740 C = 7728.678407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.062 0.938 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.078 4.078 7 H 0.133 0.867 8 C 0.452 3.548 9 O -0.525 6.525 10 O -0.289 6.289 11 C 0.110 3.890 12 C -0.190 4.190 13 C -0.046 4.046 14 C -0.197 4.197 15 C 0.126 3.874 16 O -0.221 6.221 17 C -0.419 4.419 18 H 0.088 0.912 19 C -0.015 4.015 20 N -0.912 5.912 21 Si 1.015 2.985 22 H -0.255 1.255 23 H -0.263 1.263 24 H -0.263 1.263 25 C -0.250 4.250 26 C -0.123 4.123 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.131 0.869 37 H 0.276 0.724 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.230 -1.473 -20.564 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.080 0.920 4 C -0.146 4.146 5 C -0.147 4.147 6 C -0.097 4.097 7 H 0.151 0.849 8 C 0.298 3.702 9 O -0.411 6.411 10 O -0.204 6.204 11 C 0.069 3.931 12 C -0.208 4.208 13 C -0.064 4.064 14 C -0.216 4.216 15 C 0.075 3.925 16 O -0.127 6.127 17 C -0.495 4.495 18 H 0.105 0.895 19 C -0.214 4.214 20 N -0.549 5.549 21 Si 0.834 3.166 22 H -0.180 1.180 23 H -0.187 1.187 24 H -0.187 1.187 25 C -0.270 4.270 26 C -0.160 4.160 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.178 0.822 35 H 0.196 0.804 36 H 0.149 0.851 37 H 0.085 0.915 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.039 -1.093 -19.894 23.279 hybrid contribution -0.193 -0.269 1.377 1.416 sum -12.232 -1.361 -18.517 22.234 Atomic orbital electron populations 1.21772 0.93341 1.02697 1.01947 1.21990 0.96800 0.98736 0.94140 0.91965 1.22594 0.94144 1.00739 0.97165 1.22389 0.99138 1.02821 0.90338 1.21986 0.87281 1.03947 0.96474 0.84916 1.25157 0.84940 0.78595 0.81535 1.90709 1.85448 1.32333 1.32657 1.84556 1.15306 1.57926 1.62606 1.18530 0.87850 0.97247 0.89520 1.21038 0.95947 1.02393 1.01470 1.21094 0.97349 0.96275 0.91658 1.20714 0.99623 1.06000 0.95290 1.19741 0.93946 0.94200 0.84595 1.83959 1.50170 1.62932 1.15634 1.21660 1.12067 1.24860 0.90884 0.89451 1.26539 1.00335 0.99126 0.95383 1.70151 1.36100 1.41660 1.07018 0.84659 0.76577 0.77714 0.77683 1.17980 1.18728 1.18727 1.21173 1.01186 1.09867 0.94747 1.22405 0.94802 0.99582 0.99235 0.93330 0.91438 0.91376 0.89001 0.89685 0.92101 0.88041 0.82223 0.80448 0.85075 0.91454 0.87718 0.89025 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.12 71.98 0.66 -1.14 16 2 C -0.10 -1.61 3.46 -9.72 -0.03 -1.65 16 3 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 4 C -0.11 -1.32 6.33 31.88 0.20 -1.12 16 5 C -0.11 -1.75 6.34 31.67 0.20 -1.55 16 6 C -0.08 -1.72 3.41 -10.82 -0.04 -1.76 16 7 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 8 C 0.45 15.44 6.91 71.24 0.49 15.93 16 9 O -0.52 -22.78 14.28 21.97 0.31 -22.47 16 10 O -0.29 -10.32 10.03 4.60 0.05 -10.28 16 11 C 0.11 4.52 5.46 22.49 0.12 4.64 16 12 C -0.19 -6.40 9.99 22.40 0.22 -6.18 16 13 C -0.05 -1.52 10.03 22.24 0.22 -1.29 16 14 C -0.20 -8.46 9.99 22.40 0.22 -8.23 16 15 C 0.13 6.70 6.64 22.56 0.15 6.85 16 16 O -0.22 -13.90 9.76 -22.74 -0.22 -14.12 16 17 C -0.42 -25.96 9.44 67.92 0.64 -25.32 16 18 H 0.09 5.21 5.30 -2.91 -0.02 5.19 16 19 C -0.02 -0.90 5.49 84.84 0.47 -0.43 16 20 N -0.91 -57.07 13.67 21.61 0.30 -56.78 16 21 Si 1.02 44.91 29.55 68.60 2.03 46.94 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 23 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 C -0.25 -12.51 7.99 22.48 0.18 -12.33 16 26 C -0.12 -2.65 5.97 31.32 0.19 -2.46 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 30 H 0.09 0.81 8.04 -2.39 -0.02 0.79 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 1.13 7.85 -2.38 -0.02 1.11 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.18 3.96 8.06 -2.91 -0.02 3.93 16 36 H 0.13 5.31 8.06 -2.91 -0.02 5.28 16 37 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 38 H 0.10 5.66 5.72 -2.91 -0.02 5.65 16 39 H 0.09 1.64 7.84 -2.39 -0.02 1.62 16 40 H 0.06 1.65 6.40 -2.39 -0.02 1.64 16 Total: -1.00 -79.00 335.76 7.40 -71.60 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 1.04 Total: 21.15 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 3.90 Total: -36.04 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.30 Total: -56.78 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: 0.14 Total: -46.86 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -79.00 7.40 -71.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.588 kcal (2) G-P(sol) polarization free energy of solvation -78.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds