Wall clock time and date at job start Tue Mar 31 2020 05:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47504 * 2 1 4 4 C 1.33093 * 119.99905 * 94.99839 * 3 2 1 5 5 C 1.46935 * 120.00124 * 173.74513 * 4 3 2 6 6 O 1.21545 * 119.99992 * 1.95864 * 5 4 3 7 7 O 1.34811 * 119.99919 * 181.95183 * 5 4 3 8 8 C 1.35911 * 117.00204 * 185.12104 * 7 5 4 9 9 C 1.38836 * 120.02291 * 248.09302 * 8 7 5 10 10 C 1.38184 * 120.07655 * 179.76615 * 9 8 7 11 11 C 1.38148 * 120.12878 * 0.50444 * 10 9 8 12 12 C 1.38900 * 120.04355 * 359.74684 * 11 10 9 13 13 O 1.35749 * 120.04333 * 179.97438 * 12 11 10 14 14 C 1.34825 * 117.00099 * 185.30627 * 13 12 11 15 15 H 1.08007 * 120.00229 * 354.92119 * 14 13 12 16 16 C 1.38652 * 120.00301 * 174.92153 * 14 13 12 17 17 N 1.31557 * 119.99696 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00315 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46942 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46652 * 120.00143 * 18 16 14 21 21 H 1.48502 * 109.47190 * 239.99946 * 18 16 14 22 22 C 1.38578 * 120.02010 * 68.36098 * 8 7 5 23 23 C 1.50699 * 120.00215 * 275.00371 * 3 2 1 24 24 C 1.53004 * 109.46660 * 262.81224 * 23 3 2 25 25 H 1.09001 * 109.47104 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47134 * 299.99956 * 1 2 3 27 27 H 1.09003 * 109.46927 * 59.99315 * 1 2 3 28 28 H 1.08999 * 109.47134 * 240.00044 * 2 1 3 29 29 H 1.09003 * 109.46927 * 120.00685 * 2 1 3 30 30 H 1.08004 * 119.99789 * 353.75370 * 4 3 2 31 31 H 1.08002 * 119.95629 * 359.97438 * 9 8 7 32 32 H 1.08006 * 119.93119 * 180.22878 * 10 9 8 33 33 H 1.08002 * 119.97987 * 179.72703 * 11 10 9 34 34 H 0.96996 * 120.00371 * 179.97438 * 17 16 14 35 35 H 1.08005 * 120.06602 * 359.95975 * 22 8 7 36 36 H 1.08995 * 109.47313 * 22.81380 * 23 3 2 37 37 H 1.09003 * 109.47268 * 142.81700 * 23 3 2 38 38 H 1.09001 * 109.46601 * 179.97438 * 24 23 3 39 39 H 1.08997 * 109.47267 * 299.99578 * 24 23 3 40 40 H 1.08994 * 109.46983 * 60.00394 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3489 2.0146 1.1482 5 6 2.9671 3.3476 1.1400 6 8 3.1569 3.9230 0.0863 7 8 3.3238 3.9324 2.3011 8 6 3.7909 5.2068 2.2322 9 6 5.1228 5.4749 2.5183 10 6 5.6001 6.7695 2.4438 11 6 4.7516 7.8024 2.0949 12 6 3.4170 7.5408 1.8127 13 8 2.5832 8.5558 1.4703 14 6 1.2788 8.2511 1.3167 15 1 0.9525 7.2238 1.3848 16 6 0.3561 9.2566 1.0715 17 7 0.7536 10.5079 0.9881 18 14 -1.4509 8.8344 0.8580 19 1 -1.6361 7.3674 0.9956 20 1 -2.2486 9.5333 1.8974 21 1 -1.9047 9.2669 -0.4882 22 6 2.9369 6.2403 1.8818 23 6 2.1763 2.1691 -1.3001 24 6 3.6287 2.0917 -1.7749 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 2.1515 1.5167 2.0861 31 1 5.7873 4.6700 2.7960 32 1 6.6375 6.9749 2.6633 33 1 5.1262 8.8140 2.0417 34 1 0.1082 11.2114 0.8161 35 1 1.8996 6.0343 1.6625 36 1 1.5244 1.7223 -2.0506 37 1 1.8977 3.2124 -1.1516 38 1 3.7327 2.6326 -2.7155 39 1 4.2807 2.5386 -1.0244 40 1 3.9073 1.0485 -1.9235 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841345570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:15 Heat of formation + Delta-G solvation = -69.035350 kcal Electronic energy + Delta-G solvation = -22776.924478 eV Core-core repulsion = 19330.367737 eV Total energy + Delta-G solvation = -3446.556742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.84967 -38.93327 -37.82758 -36.22629 -35.54779 -32.30223 -32.08766 -30.59471 -29.48099 -28.84418 -25.62199 -25.16244 -23.39211 -22.89661 -21.64164 -20.72183 -18.59427 -18.28235 -17.88594 -16.85043 -15.85840 -15.78198 -15.23902 -15.10064 -14.62827 -14.29064 -14.17438 -13.98682 -13.61192 -13.59505 -13.11397 -12.94888 -12.62595 -12.59622 -12.24439 -11.96930 -11.86117 -11.58376 -11.51782 -11.27959 -11.07290 -10.97887 -10.82774 -10.81903 -10.46273 -10.19794 -9.82593 -9.49522 -9.33293 -8.87163 -8.11071 -7.33105 -6.47911 -4.07089 1.09837 1.84999 2.23952 3.06636 3.10086 3.12606 3.18473 3.22587 3.94747 4.44406 4.50218 4.61844 4.89653 4.98911 5.04750 5.11668 5.21071 5.25591 5.37197 5.46540 5.55230 5.59356 5.61231 5.62182 5.80118 5.85977 5.92324 6.02059 6.13122 6.16757 6.20893 6.25154 6.40049 6.53513 6.61951 6.94706 7.06032 7.11763 7.16627 7.34908 7.63781 7.96197 8.25233 8.97461 9.64393 10.69798 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.005020 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.168926 B = 5576.035850 C = 7127.295953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.016 4.016 4 C -0.202 4.202 5 C 0.483 3.517 6 O -0.478 6.478 7 O -0.295 6.295 8 C 0.126 3.874 9 C -0.212 4.212 10 C -0.064 4.064 11 C -0.189 4.189 12 C 0.165 3.835 13 O -0.171 6.171 14 C -0.392 4.392 15 H 0.091 0.909 16 C 0.041 3.959 17 N -0.860 5.860 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.275 1.275 22 C -0.235 4.235 23 C -0.108 4.108 24 C -0.134 4.134 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.270 0.730 35 H 0.131 0.869 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -18.990 -1.126 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.017 4.017 4 C -0.221 4.221 5 C 0.330 3.670 6 O -0.366 6.366 7 O -0.211 6.211 8 C 0.085 3.915 9 C -0.231 4.231 10 C -0.082 4.082 11 C -0.209 4.209 12 C 0.111 3.889 13 O -0.074 6.074 14 C -0.468 4.468 15 H 0.108 0.892 16 C -0.163 4.163 17 N -0.495 5.495 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.254 4.254 23 C -0.145 4.145 24 C -0.191 4.191 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.156 0.844 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.080 0.920 35 H 0.148 0.852 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.998 -18.321 -1.536 18.493 hybrid contribution -0.971 -0.182 0.005 0.988 sum 1.027 -18.502 -1.531 18.594 Atomic orbital electron populations 1.21740 0.93938 1.02156 1.02803 1.20765 0.96852 0.92013 1.03564 1.22713 0.89001 0.94963 0.95010 1.21662 1.07372 0.93445 0.99606 1.21751 0.76698 0.86774 0.81771 1.90857 1.49578 1.65039 1.31113 1.84582 1.74502 1.27396 1.34593 1.18217 0.92181 0.80451 1.00651 1.20452 0.93108 0.97447 1.12081 1.20478 0.98432 0.91471 0.97866 1.20316 0.91784 0.99728 1.09035 1.19110 0.90922 0.87336 0.91518 1.83994 1.18618 1.30694 1.74144 1.21358 0.79646 0.94962 1.50820 0.89178 1.25278 1.00090 0.94474 0.96478 1.70042 1.35198 0.99410 1.44816 0.85657 0.80568 0.78907 0.78399 1.19108 1.19987 1.20004 1.21196 1.00908 0.92529 1.10815 1.21044 0.98320 1.02125 0.92975 1.21575 0.95484 1.00334 1.01706 0.91983 0.92113 0.92174 0.90071 0.90386 0.84438 0.86769 0.86029 0.85933 0.91977 0.85187 0.91762 0.87798 0.92316 0.91666 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.09 -0.73 6.07 -27.89 -0.17 -0.90 16 3 C -0.02 -0.18 4.62 -101.14 -0.47 -0.65 16 4 C -0.20 -2.59 9.73 -37.85 -0.37 -2.96 16 5 C 0.48 8.37 7.40 34.25 0.25 8.62 16 6 O -0.48 -9.35 10.56 -19.30 -0.20 -9.56 16 7 O -0.30 -5.57 10.05 -25.03 -0.25 -5.82 16 8 C 0.13 2.64 5.30 -39.23 -0.21 2.44 16 9 C -0.21 -4.00 9.99 -39.38 -0.39 -4.39 16 10 C -0.06 -1.18 10.03 -39.63 -0.40 -1.58 16 11 C -0.19 -4.08 9.99 -39.37 -0.39 -4.47 16 12 C 0.17 4.16 6.65 -39.13 -0.26 3.90 16 13 O -0.17 -5.00 9.76 0.07 0.00 -5.00 16 14 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 15 H 0.09 2.46 5.20 -52.48 -0.27 2.19 16 16 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 17 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 18 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 22 C -0.23 -5.57 8.40 -39.25 -0.33 -5.90 16 23 C -0.11 -1.34 5.36 -27.88 -0.15 -1.48 16 24 C -0.13 -1.65 9.32 37.16 0.35 -1.30 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 30 H 0.14 1.43 8.05 -52.48 -0.42 1.01 16 31 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.13 3.19 5.63 -52.48 -0.30 2.90 16 36 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.10 1.62 5.94 -51.93 -0.31 1.31 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.95 6.23 -51.93 -0.32 0.63 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -32.16 341.15 -6.95 -39.11 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.40 Total: 4.15 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -1.97 Total: -19.30 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.76 Total: -24.64 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.45 Total: -20.38 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.16 -6.95 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.927 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds