Wall clock time and date at job start Tue Mar 31 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47504 * 2 1 4 4 C 1.33093 * 119.99905 * 94.99839 * 3 2 1 5 5 C 1.46935 * 120.00124 * 173.74513 * 4 3 2 6 6 O 1.21545 * 119.99992 * 1.95864 * 5 4 3 7 7 O 1.34811 * 119.99919 * 181.95183 * 5 4 3 8 8 C 1.35911 * 117.00204 * 185.12104 * 7 5 4 9 9 C 1.38836 * 120.02291 * 248.09302 * 8 7 5 10 10 C 1.38184 * 120.07655 * 179.76615 * 9 8 7 11 11 C 1.38148 * 120.12878 * 0.50444 * 10 9 8 12 12 C 1.38900 * 120.04355 * 359.74684 * 11 10 9 13 13 O 1.35749 * 120.04333 * 179.97438 * 12 11 10 14 14 C 1.34825 * 117.00099 * 185.30627 * 13 12 11 15 15 H 1.08007 * 120.00229 * 354.92119 * 14 13 12 16 16 C 1.38652 * 120.00301 * 174.92153 * 14 13 12 17 17 N 1.31557 * 119.99696 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00315 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46942 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46652 * 120.00143 * 18 16 14 21 21 H 1.48502 * 109.47190 * 239.99946 * 18 16 14 22 22 C 1.38578 * 120.02010 * 68.36098 * 8 7 5 23 23 C 1.50699 * 120.00215 * 275.00371 * 3 2 1 24 24 C 1.53004 * 109.46660 * 262.81224 * 23 3 2 25 25 H 1.09001 * 109.47104 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47134 * 299.99956 * 1 2 3 27 27 H 1.09003 * 109.46927 * 59.99315 * 1 2 3 28 28 H 1.08999 * 109.47134 * 240.00044 * 2 1 3 29 29 H 1.09003 * 109.46927 * 120.00685 * 2 1 3 30 30 H 1.08004 * 119.99789 * 353.75370 * 4 3 2 31 31 H 1.08002 * 119.95629 * 359.97438 * 9 8 7 32 32 H 1.08006 * 119.93119 * 180.22878 * 10 9 8 33 33 H 1.08002 * 119.97987 * 179.72703 * 11 10 9 34 34 H 0.96996 * 120.00371 * 179.97438 * 17 16 14 35 35 H 1.08005 * 120.06602 * 359.95975 * 22 8 7 36 36 H 1.08995 * 109.47313 * 22.81380 * 23 3 2 37 37 H 1.09003 * 109.47268 * 142.81700 * 23 3 2 38 38 H 1.09001 * 109.46601 * 179.97438 * 24 23 3 39 39 H 1.08997 * 109.47267 * 299.99578 * 24 23 3 40 40 H 1.08994 * 109.46983 * 60.00394 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3489 2.0146 1.1482 5 6 2.9671 3.3476 1.1400 6 8 3.1569 3.9230 0.0863 7 8 3.3238 3.9324 2.3011 8 6 3.7909 5.2068 2.2322 9 6 5.1228 5.4749 2.5183 10 6 5.6001 6.7695 2.4438 11 6 4.7516 7.8024 2.0949 12 6 3.4170 7.5408 1.8127 13 8 2.5832 8.5558 1.4703 14 6 1.2788 8.2511 1.3167 15 1 0.9525 7.2238 1.3848 16 6 0.3561 9.2566 1.0715 17 7 0.7536 10.5079 0.9881 18 14 -1.4509 8.8344 0.8580 19 1 -1.6361 7.3674 0.9956 20 1 -2.2486 9.5333 1.8974 21 1 -1.9047 9.2669 -0.4882 22 6 2.9369 6.2403 1.8818 23 6 2.1763 2.1691 -1.3001 24 6 3.6287 2.0917 -1.7749 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 2.1515 1.5167 2.0861 31 1 5.7873 4.6700 2.7960 32 1 6.6375 6.9749 2.6633 33 1 5.1262 8.8140 2.0417 34 1 0.1082 11.2114 0.8161 35 1 1.8996 6.0343 1.6625 36 1 1.5244 1.7223 -2.0506 37 1 1.8977 3.2124 -1.1516 38 1 3.7327 2.6326 -2.7155 39 1 4.2807 2.5386 -1.0244 40 1 3.9073 1.0485 -1.9235 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841345570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:14 Heat of formation + Delta-G solvation = -86.831596 kcal Electronic energy + Delta-G solvation = -22777.696181 eV Core-core repulsion = 19330.367737 eV Total energy + Delta-G solvation = -3447.328445 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.31280 -40.65368 -39.23591 -37.69379 -36.95011 -34.36917 -32.90438 -31.83804 -31.00992 -30.50598 -27.52882 -26.37956 -24.31364 -24.16779 -23.37710 -22.21320 -20.14478 -19.68586 -19.53439 -18.33934 -17.36372 -17.31947 -16.88738 -16.18068 -16.12320 -15.87195 -15.66086 -15.47416 -15.02659 -14.73509 -14.58864 -14.32805 -13.94037 -13.69851 -13.55537 -13.26146 -13.07630 -13.00737 -12.78696 -12.64775 -12.52959 -12.28193 -12.20430 -12.11083 -11.76119 -11.64158 -11.53244 -11.04415 -10.87007 -10.29882 -9.79308 -9.17079 -8.55644 -6.25036 -0.03336 0.23343 0.53290 1.27981 1.36287 1.46311 1.80680 1.84827 2.10702 2.71733 3.03545 3.35664 3.57955 3.64631 3.96595 4.02849 4.17035 4.18790 4.30232 4.34953 4.37309 4.50286 4.51796 4.60367 4.66485 4.78579 4.88412 4.92004 4.96699 4.99465 5.08258 5.12517 5.27197 5.33588 5.36747 5.41059 5.44359 5.50127 5.53285 5.64505 5.91825 6.01173 6.80975 6.88224 7.63529 8.67013 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.005020 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.168926 B = 5576.035850 C = 7127.295953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C 0.009 3.991 4 C -0.222 4.222 5 C 0.474 3.526 6 O -0.510 6.510 7 O -0.297 6.297 8 C 0.119 3.881 9 C -0.193 4.193 10 C -0.045 4.045 11 C -0.198 4.198 12 C 0.130 3.870 13 O -0.221 6.221 14 C -0.418 4.418 15 H 0.089 0.911 16 C -0.015 4.015 17 N -0.912 5.912 18 Si 1.015 2.985 19 H -0.260 1.260 20 H -0.260 1.260 21 H -0.263 1.263 22 C -0.252 4.252 23 C -0.113 4.113 24 C -0.130 4.130 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.176 0.824 33 H 0.131 0.869 34 H 0.276 0.724 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.037 0.963 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.591 -22.609 -0.818 22.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.127 4.127 3 C 0.008 3.992 4 C -0.240 4.240 5 C 0.323 3.677 6 O -0.399 6.399 7 O -0.213 6.213 8 C 0.078 3.922 9 C -0.212 4.212 10 C -0.063 4.063 11 C -0.217 4.217 12 C 0.079 3.921 13 O -0.127 6.127 14 C -0.494 4.494 15 H 0.106 0.894 16 C -0.213 4.213 17 N -0.549 5.549 18 Si 0.834 3.166 19 H -0.184 1.184 20 H -0.184 1.184 21 H -0.188 1.188 22 C -0.272 4.272 23 C -0.150 4.150 24 C -0.187 4.187 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.182 0.818 31 H 0.173 0.827 32 H 0.194 0.806 33 H 0.149 0.851 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.623 -21.984 -1.210 22.173 hybrid contribution -0.907 0.713 -0.095 1.157 sum 1.716 -21.272 -1.305 21.381 Atomic orbital electron populations 1.21758 0.93423 1.03356 1.02161 1.20887 0.97020 0.89292 1.05542 1.23077 0.86216 0.96348 0.93559 1.21801 1.09160 0.91500 1.01587 1.22691 0.76229 0.87940 0.80797 1.90864 1.51065 1.66108 1.31881 1.84597 1.74839 1.26140 1.35702 1.18428 0.92858 0.80901 1.00034 1.21041 0.92373 0.98912 1.08843 1.21067 1.00274 0.90060 0.94898 1.20695 0.90712 1.01470 1.08787 1.19691 0.92091 0.87400 0.92968 1.83950 1.19105 1.32558 1.77081 1.21709 0.80359 0.95379 1.51969 0.89372 1.26527 1.05077 0.94103 0.95637 1.70158 1.37190 1.00643 1.46957 0.84603 0.73924 0.79026 0.79082 1.18384 1.18420 1.18755 1.21146 1.00523 0.93197 1.12300 1.21042 0.98935 1.00362 0.94693 1.21526 0.94768 1.01842 1.00578 0.89872 0.92930 0.92765 0.88103 0.88440 0.81769 0.82735 0.80639 0.85099 0.91478 0.87513 0.89218 0.91696 0.92669 0.94364 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 71.98 0.71 -0.99 16 2 C -0.09 -1.05 6.07 29.85 0.18 -0.86 16 3 C 0.01 0.18 4.62 -17.60 -0.08 0.10 16 4 C -0.22 -5.39 9.73 23.40 0.23 -5.17 16 5 C 0.47 16.56 7.40 70.10 0.52 17.08 16 6 O -0.51 -20.72 10.56 19.69 0.21 -20.51 16 7 O -0.30 -11.16 10.05 -0.80 -0.01 -11.17 16 8 C 0.12 5.00 5.30 22.49 0.12 5.12 16 9 C -0.19 -6.77 9.99 22.40 0.22 -6.54 16 10 C -0.05 -1.53 10.03 22.24 0.22 -1.31 16 11 C -0.20 -8.54 9.99 22.41 0.22 -8.32 16 12 C 0.13 6.86 6.65 22.56 0.15 7.01 16 13 O -0.22 -13.83 9.76 -22.68 -0.22 -14.05 16 14 C -0.42 -25.73 9.49 67.92 0.64 -25.09 16 15 H 0.09 5.22 5.20 -2.91 -0.02 5.21 16 16 C -0.01 -0.87 5.49 84.83 0.47 -0.41 16 17 N -0.91 -56.69 13.67 21.61 0.30 -56.40 16 18 Si 1.01 44.52 29.55 68.60 2.03 46.55 16 19 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 22 C -0.25 -12.57 8.40 22.49 0.19 -12.39 16 23 C -0.11 -2.71 5.36 29.85 0.16 -2.55 16 24 C -0.13 -3.08 9.32 71.98 0.67 -2.41 16 25 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.84 8.03 -2.39 -0.02 0.82 16 30 H 0.16 3.03 8.05 -2.91 -0.02 3.00 16 31 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 32 H 0.18 4.10 8.06 -2.91 -0.02 4.07 16 33 H 0.13 5.34 8.06 -2.91 -0.02 5.32 16 34 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 35 H 0.11 5.70 5.63 -2.91 -0.02 5.69 16 36 H 0.09 1.67 8.08 -2.39 -0.02 1.65 16 37 H 0.06 2.12 5.94 -2.39 -0.01 2.10 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.04 1.11 6.23 -2.39 -0.01 1.09 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -77.34 341.15 7.97 -69.37 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 1.04 Total: 22.92 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 4.63 Total: -36.72 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.30 Total: -56.40 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -0.02 Total: -45.73 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -77.34 7.97 -69.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.461 kcal (2) G-P(sol) polarization free energy of solvation -77.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds