Wall clock time and date at job start Tue Mar 31 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46704 * 2 1 4 4 C 1.52998 * 109.46676 * 184.94351 * 3 2 1 5 5 C 1.50700 * 115.55227 * 269.55009 * 4 3 2 6 6 O 1.20828 * 119.99827 * 150.58498 * 5 4 3 7 7 O 1.34261 * 120.00314 * 330.58636 * 5 4 3 8 8 C 1.35917 * 117.00277 * 175.00891 * 7 5 4 9 9 C 1.38824 * 120.01975 * 255.19592 * 8 7 5 10 10 C 1.38189 * 120.08363 * 179.97438 * 9 8 7 11 11 C 1.38153 * 120.12270 * 0.02562 * 10 9 8 12 12 C 1.38894 * 120.03969 * 0.02562 * 11 10 9 13 13 O 1.35756 * 120.04071 * 180.02562 * 12 11 10 14 14 C 1.34826 * 117.00105 * 185.75891 * 13 12 11 15 15 H 1.08001 * 119.99851 * 5.44412 * 14 13 12 16 16 C 1.38653 * 120.00099 * 185.44070 * 14 13 12 17 17 N 1.31552 * 119.99870 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00162 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46713 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46871 * 120.00170 * 18 16 14 21 21 H 1.48494 * 109.47089 * 240.00583 * 18 16 14 22 22 C 1.38568 * 120.02293 * 74.91979 * 8 7 5 23 23 C 1.53002 * 117.50028 * 55.22525 * 4 3 2 24 24 C 1.52998 * 60.03462 * 107.47324 * 23 4 3 25 25 H 1.09001 * 109.47309 * 59.99620 * 1 2 3 26 26 H 1.08996 * 109.47398 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47247 * 299.99827 * 1 2 3 28 28 H 1.09001 * 109.47247 * 240.00173 * 2 1 3 29 29 H 1.08997 * 109.46857 * 119.99800 * 2 1 3 30 30 H 1.09005 * 109.47419 * 64.95092 * 3 2 1 31 31 H 1.08991 * 109.47321 * 304.94423 * 3 2 1 32 32 H 1.08003 * 119.96091 * 359.97438 * 9 8 7 33 33 H 1.07997 * 119.93976 * 180.02562 * 10 9 8 34 34 H 1.07999 * 119.97926 * 179.97438 * 11 10 9 35 35 H 0.96997 * 120.00145 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.06160 * 359.97438 * 22 8 7 37 37 H 1.08994 * 117.50064 * 214.97603 * 23 4 3 38 38 H 1.09003 * 117.49618 * 359.97153 * 23 4 3 39 39 H 1.09004 * 117.50039 * 107.49971 * 24 23 4 40 40 H 1.08992 * 117.50641 * 252.52493 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5648 1.4443 -0.1243 5 6 4.3232 1.4167 1.1777 6 8 5.4146 0.9010 1.2303 7 8 3.7861 1.9651 2.2792 8 6 4.4741 1.8148 3.4417 9 6 4.0346 0.9082 4.3967 10 6 4.7335 0.7539 5.5788 11 6 5.8711 1.5016 5.8143 12 6 6.3148 2.4110 4.8629 13 8 7.4330 3.1453 5.0940 14 6 7.7418 4.0927 4.1857 15 1 7.0652 4.2993 3.3697 16 6 8.9279 4.8016 4.2994 17 7 9.7522 4.5496 5.2931 18 14 9.3554 6.1147 3.0413 19 1 8.2704 6.2046 2.0315 20 1 9.5050 7.4247 3.7245 21 1 10.6304 5.7589 2.3683 22 6 5.6180 2.5624 3.6720 23 6 4.1775 0.7034 -1.3145 24 6 4.1784 2.2331 -1.2839 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7508 1.9302 0.9310 31 1 1.6061 1.9813 -0.8423 32 1 3.1454 0.3226 4.2156 33 1 4.3897 0.0476 6.3200 34 1 6.4152 1.3795 6.7392 35 1 10.5822 5.0452 5.3724 36 1 5.9641 3.2647 2.9281 37 1 5.1292 0.1964 -1.1560 38 1 3.4941 0.2143 -2.0088 39 1 5.1307 2.7324 -1.1052 40 1 3.4954 2.7505 -1.9576 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841345804.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:45 Heat of formation + Delta-G solvation = -63.628457 kcal Electronic energy + Delta-G solvation = -22829.759032 eV Core-core repulsion = 19383.436751 eV Total energy + Delta-G solvation = -3446.322281 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.06739 -39.09839 -38.09497 -36.60415 -35.71866 -33.81635 -32.31565 -29.84038 -28.95552 -27.79387 -25.52200 -24.76579 -22.96281 -22.09859 -21.59840 -21.21521 -19.61785 -18.26499 -17.70545 -17.11900 -16.12290 -15.93220 -15.15283 -15.09587 -14.88476 -14.41062 -14.18775 -14.07529 -13.62071 -13.53033 -13.23877 -12.91932 -12.64428 -12.36866 -11.93537 -11.87241 -11.74444 -11.57873 -11.49285 -11.29206 -11.03217 -10.91249 -10.84002 -10.67617 -10.47328 -10.31985 -10.20663 -10.14512 -9.55331 -8.88590 -8.16977 -7.36060 -6.49262 -4.08426 1.75824 2.20617 2.21275 3.02741 3.11674 3.12862 3.18041 3.57348 3.93834 4.32473 4.44660 4.51725 4.63764 4.81270 4.94383 4.99782 5.06167 5.14756 5.19024 5.39395 5.51317 5.53828 5.59086 5.66720 5.69424 5.70833 5.78583 5.90487 5.95180 6.00161 6.05691 6.14280 6.16256 6.34311 6.55412 6.90411 7.00229 7.08489 7.13094 7.31817 7.59630 7.94429 8.19036 8.95963 9.62426 10.68381 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.004504 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.708097 B = 6215.713167 C = 7490.059533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.082 4.082 4 C -0.137 4.137 5 C 0.489 3.511 6 O -0.484 6.484 7 O -0.290 6.290 8 C 0.120 3.880 9 C -0.211 4.211 10 C -0.065 4.065 11 C -0.187 4.187 12 C 0.163 3.837 13 O -0.170 6.170 14 C -0.392 4.392 15 H 0.091 0.909 16 C 0.041 3.959 17 N -0.859 5.859 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.229 4.229 23 C -0.141 4.141 24 C -0.145 4.145 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.271 0.729 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.318 -6.148 -11.508 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.119 4.119 4 C -0.138 4.138 5 C 0.333 3.667 6 O -0.368 6.368 7 O -0.205 6.205 8 C 0.079 3.921 9 C -0.231 4.231 10 C -0.083 4.083 11 C -0.206 4.206 12 C 0.109 3.891 13 O -0.073 6.073 14 C -0.468 4.468 15 H 0.108 0.892 16 C -0.163 4.163 17 N -0.494 5.494 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.248 4.248 23 C -0.178 4.178 24 C -0.182 4.182 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.081 0.919 36 H 0.149 0.851 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.550 -6.199 -11.205 19.382 hybrid contribution 0.337 0.697 -0.568 0.960 sum -14.213 -5.502 -11.773 19.258 Atomic orbital electron populations 1.21761 0.95594 1.01630 1.01887 1.21557 0.95842 0.96411 1.02416 1.21199 0.89194 0.97698 1.03807 1.21038 0.95910 1.10803 0.86072 1.22688 0.84522 0.74814 0.84721 1.90720 1.20406 1.40737 1.84979 1.84465 1.50716 1.69771 1.15570 1.18240 0.92906 0.97124 0.83809 1.20497 1.03631 1.02408 0.96533 1.20485 0.93991 0.97927 0.95935 1.20325 0.99466 1.00724 1.00114 1.19135 0.87675 0.90577 0.91709 1.84013 1.34878 1.42430 1.46023 1.21359 1.05610 1.12208 1.07649 0.89184 1.25292 0.94589 0.98625 0.97831 1.70040 1.10442 1.39809 1.29071 0.85647 0.78970 0.79435 0.79419 1.19092 1.19962 1.19988 1.21213 0.97534 1.05843 1.00258 1.23155 1.03103 0.94887 0.96675 1.23225 1.02842 0.94924 0.97205 0.92798 0.92753 0.92503 0.91781 0.91890 0.89777 0.90795 0.86781 0.85972 0.85857 0.91938 0.85127 0.87193 0.87291 0.87811 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.12 5.81 -26.73 -0.16 -1.28 16 3 C -0.08 -0.81 5.25 -26.73 -0.14 -0.95 16 4 C -0.14 -1.70 2.14 -155.62 -0.33 -2.03 16 5 C 0.49 8.60 7.39 36.01 0.27 8.86 16 6 O -0.48 -10.19 15.69 -18.75 -0.29 -10.48 16 7 O -0.29 -5.42 9.14 -23.59 -0.22 -5.64 16 8 C 0.12 2.52 5.20 -39.24 -0.20 2.31 16 9 C -0.21 -3.97 9.98 -39.38 -0.39 -4.36 16 10 C -0.07 -1.19 10.03 -39.63 -0.40 -1.59 16 11 C -0.19 -4.02 9.99 -39.37 -0.39 -4.41 16 12 C 0.16 4.12 6.64 -39.13 -0.26 3.86 16 13 O -0.17 -4.97 9.76 0.04 0.00 -4.97 16 14 C -0.39 -11.28 9.44 30.89 0.29 -10.99 16 15 H 0.09 2.46 5.30 -52.49 -0.28 2.18 16 16 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 17 N -0.86 -25.40 13.67 55.48 0.76 -24.65 16 18 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 C -0.23 -5.46 8.52 -39.25 -0.33 -5.80 16 23 C -0.14 -1.46 9.16 -26.73 -0.24 -1.71 16 24 C -0.15 -1.51 9.89 -26.69 -0.26 -1.78 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.52 6.83 -51.93 -0.35 0.16 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.93 7.33 -51.93 -0.38 0.55 16 31 H 0.07 0.59 7.88 -51.93 -0.41 0.18 16 32 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 33 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.13 3.23 5.72 -52.49 -0.30 2.93 16 37 H 0.11 1.31 7.68 -51.93 -0.40 0.91 16 38 H 0.11 0.83 7.27 -51.93 -0.38 0.45 16 39 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.11 0.85 8.03 -51.93 -0.42 0.43 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -32.82 343.20 -7.33 -40.15 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.43 Total: 4.06 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -2.29 Total: -19.57 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.76 Total: -24.65 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.51 Total: -21.09 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.82 -7.33 -40.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345804.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.478 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds