Wall clock time and date at job start Tue Mar 31 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46704 * 2 1 4 4 C 1.52998 * 109.46676 * 184.94351 * 3 2 1 5 5 C 1.50700 * 115.55227 * 269.55009 * 4 3 2 6 6 O 1.20828 * 119.99827 * 150.58498 * 5 4 3 7 7 O 1.34261 * 120.00314 * 330.58636 * 5 4 3 8 8 C 1.35917 * 117.00277 * 175.00891 * 7 5 4 9 9 C 1.38824 * 120.01975 * 255.19592 * 8 7 5 10 10 C 1.38189 * 120.08363 * 179.97438 * 9 8 7 11 11 C 1.38153 * 120.12270 * 0.02562 * 10 9 8 12 12 C 1.38894 * 120.03969 * 0.02562 * 11 10 9 13 13 O 1.35756 * 120.04071 * 180.02562 * 12 11 10 14 14 C 1.34826 * 117.00105 * 185.75891 * 13 12 11 15 15 H 1.08001 * 119.99851 * 5.44412 * 14 13 12 16 16 C 1.38653 * 120.00099 * 185.44070 * 14 13 12 17 17 N 1.31552 * 119.99870 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00162 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46713 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46871 * 120.00170 * 18 16 14 21 21 H 1.48494 * 109.47089 * 240.00583 * 18 16 14 22 22 C 1.38568 * 120.02293 * 74.91979 * 8 7 5 23 23 C 1.53002 * 117.50028 * 55.22525 * 4 3 2 24 24 C 1.52998 * 60.03462 * 107.47324 * 23 4 3 25 25 H 1.09001 * 109.47309 * 59.99620 * 1 2 3 26 26 H 1.08996 * 109.47398 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47247 * 299.99827 * 1 2 3 28 28 H 1.09001 * 109.47247 * 240.00173 * 2 1 3 29 29 H 1.08997 * 109.46857 * 119.99800 * 2 1 3 30 30 H 1.09005 * 109.47419 * 64.95092 * 3 2 1 31 31 H 1.08991 * 109.47321 * 304.94423 * 3 2 1 32 32 H 1.08003 * 119.96091 * 359.97438 * 9 8 7 33 33 H 1.07997 * 119.93976 * 180.02562 * 10 9 8 34 34 H 1.07999 * 119.97926 * 179.97438 * 11 10 9 35 35 H 0.96997 * 120.00145 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.06160 * 359.97438 * 22 8 7 37 37 H 1.08994 * 117.50064 * 214.97603 * 23 4 3 38 38 H 1.09003 * 117.49618 * 359.97153 * 23 4 3 39 39 H 1.09004 * 117.50039 * 107.49971 * 24 23 4 40 40 H 1.08992 * 117.50641 * 252.52493 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5648 1.4443 -0.1243 5 6 4.3232 1.4167 1.1777 6 8 5.4146 0.9010 1.2303 7 8 3.7861 1.9651 2.2792 8 6 4.4741 1.8148 3.4417 9 6 4.0346 0.9082 4.3967 10 6 4.7335 0.7539 5.5788 11 6 5.8711 1.5016 5.8143 12 6 6.3148 2.4110 4.8629 13 8 7.4330 3.1453 5.0940 14 6 7.7418 4.0927 4.1857 15 1 7.0652 4.2993 3.3697 16 6 8.9279 4.8016 4.2994 17 7 9.7522 4.5496 5.2931 18 14 9.3554 6.1147 3.0413 19 1 8.2704 6.2046 2.0315 20 1 9.5050 7.4247 3.7245 21 1 10.6304 5.7589 2.3683 22 6 5.6180 2.5624 3.6720 23 6 4.1775 0.7034 -1.3145 24 6 4.1784 2.2331 -1.2839 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7508 1.9302 0.9310 31 1 1.6061 1.9813 -0.8423 32 1 3.1454 0.3226 4.2156 33 1 4.3897 0.0476 6.3200 34 1 6.4152 1.3795 6.7392 35 1 10.5822 5.0452 5.3724 36 1 5.9641 3.2647 2.9281 37 1 5.1292 0.1964 -1.1560 38 1 3.4941 0.2143 -2.0088 39 1 5.1307 2.7324 -1.1052 40 1 3.4954 2.7505 -1.9576 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841345804.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:45 Heat of formation + Delta-G solvation = -81.920113 kcal Electronic energy + Delta-G solvation = -22830.552218 eV Core-core repulsion = 19383.436751 eV Total energy + Delta-G solvation = -3447.115467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.53035 -40.75878 -39.46032 -38.05603 -37.38667 -34.53337 -34.38550 -31.52068 -30.72094 -28.63140 -27.51680 -26.07700 -23.77872 -23.66396 -23.15895 -22.18972 -20.94098 -20.15843 -19.42934 -18.27994 -17.81333 -17.45387 -16.93582 -16.21919 -16.05635 -15.94963 -15.64966 -15.56238 -15.32428 -14.77933 -14.53344 -14.20317 -14.00249 -13.75473 -13.25599 -13.12534 -13.01480 -12.81921 -12.76261 -12.56260 -12.53056 -12.20674 -12.19015 -11.96941 -11.71670 -11.57076 -11.52793 -11.32463 -11.03156 -10.89812 -9.86145 -9.21112 -8.57213 -6.26741 0.08458 0.49569 0.86756 1.27533 1.35924 1.46035 1.64425 2.09801 2.64740 2.68045 3.01611 3.31534 3.42061 3.54936 3.69378 3.81284 3.94720 4.13002 4.25540 4.26639 4.31434 4.44109 4.48648 4.62214 4.66930 4.83744 4.85929 4.88145 4.90276 4.96804 5.00399 5.06069 5.12983 5.30116 5.31784 5.37370 5.39413 5.45686 5.49803 5.50954 5.89631 5.94603 6.68543 6.86407 7.61121 8.65426 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.004504 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.708097 B = 6215.713167 C = 7490.059533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.075 4.075 4 C -0.152 4.152 5 C 0.484 3.516 6 O -0.529 6.529 7 O -0.288 6.288 8 C 0.111 3.889 9 C -0.191 4.191 10 C -0.046 4.046 11 C -0.194 4.194 12 C 0.128 3.872 13 O -0.220 6.220 14 C -0.419 4.419 15 H 0.089 0.911 16 C -0.016 4.016 17 N -0.912 5.912 18 Si 1.016 2.984 19 H -0.259 1.259 20 H -0.259 1.259 21 H -0.264 1.264 22 C -0.248 4.248 23 C -0.128 4.128 24 C -0.137 4.137 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.178 0.822 34 H 0.133 0.867 35 H 0.276 0.724 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.147 0.853 39 H 0.082 0.918 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.387 -7.106 -13.484 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.112 4.112 4 C -0.153 4.153 5 C 0.330 3.670 6 O -0.416 6.416 7 O -0.203 6.203 8 C 0.070 3.930 9 C -0.210 4.210 10 C -0.064 4.064 11 C -0.213 4.213 12 C 0.077 3.923 13 O -0.126 6.126 14 C -0.495 4.495 15 H 0.107 0.893 16 C -0.214 4.214 17 N -0.549 5.549 18 Si 0.835 3.165 19 H -0.183 1.183 20 H -0.183 1.183 21 H -0.189 1.189 22 C -0.268 4.268 23 C -0.165 4.165 24 C -0.173 4.173 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.173 0.827 33 H 0.195 0.805 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.165 0.835 39 H 0.100 0.900 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.680 -7.184 -13.183 23.194 hybrid contribution 1.054 0.766 0.052 1.304 sum -16.626 -6.418 -13.131 22.137 Atomic orbital electron populations 1.21742 0.94353 1.02180 1.02344 1.21560 0.96868 0.95623 1.02077 1.21228 0.87066 0.98605 1.04325 1.21270 0.97029 1.13396 0.83627 1.23877 0.84342 0.73219 0.85576 1.90699 1.22545 1.42841 1.85527 1.84498 1.50178 1.70173 1.15453 1.18473 0.92132 0.96975 0.85457 1.21089 1.04043 1.00483 0.95399 1.21091 0.91789 0.96986 0.96528 1.20721 1.00655 1.00126 0.99762 1.19718 0.87415 0.91813 0.93393 1.83965 1.37212 1.44147 1.47248 1.21713 1.06469 1.13326 1.08000 0.89344 1.26555 0.93911 1.00886 1.00063 1.70156 1.11346 1.41908 1.31481 0.84588 0.78929 0.76405 0.76619 1.18284 1.18295 1.18882 1.21170 0.99226 1.06736 0.99695 1.23286 1.02661 0.94946 0.95571 1.23409 1.02480 0.95309 0.96136 0.91357 0.92204 0.93054 0.90450 0.93965 0.91286 0.87818 0.82685 0.80477 0.84887 0.91435 0.87543 0.89385 0.83515 0.89980 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.86 5.81 30.59 0.18 -1.68 16 3 C -0.08 -1.27 5.25 30.59 0.16 -1.11 16 4 C -0.15 -3.51 2.14 -52.90 -0.11 -3.63 16 5 C 0.48 17.11 7.39 71.24 0.53 17.63 16 6 O -0.53 -23.05 15.69 21.96 0.34 -22.70 16 7 O -0.29 -10.76 9.14 4.64 0.04 -10.71 16 8 C 0.11 4.66 5.20 22.49 0.12 4.77 16 9 C -0.19 -6.68 9.98 22.40 0.22 -6.45 16 10 C -0.05 -1.55 10.03 22.24 0.22 -1.33 16 11 C -0.19 -8.33 9.99 22.41 0.22 -8.10 16 12 C 0.13 6.77 6.64 22.56 0.15 6.92 16 13 O -0.22 -13.76 9.76 -22.76 -0.22 -13.98 16 14 C -0.42 -25.81 9.44 67.92 0.64 -25.17 16 15 H 0.09 5.23 5.30 -2.91 -0.02 5.21 16 16 C -0.02 -0.91 5.49 84.83 0.47 -0.44 16 17 N -0.91 -56.75 13.67 21.61 0.30 -56.45 16 18 Si 1.02 44.53 29.55 68.60 2.03 46.56 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 21 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 22 C -0.25 -12.49 8.52 22.48 0.19 -12.30 16 23 C -0.13 -2.35 9.16 30.59 0.28 -2.07 16 24 C -0.14 -2.55 9.89 30.62 0.30 -2.25 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.95 6.83 -2.39 -0.02 0.94 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 1.39 7.33 -2.38 -0.02 1.37 16 31 H 0.10 1.17 7.88 -2.39 -0.02 1.15 16 32 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.18 4.06 8.06 -2.91 -0.02 4.04 16 34 H 0.13 5.37 8.06 -2.91 -0.02 5.34 16 35 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.11 5.73 5.72 -2.91 -0.02 5.72 16 37 H 0.09 2.05 7.68 -2.39 -0.02 2.03 16 38 H 0.15 1.58 7.27 -2.39 -0.02 1.56 16 39 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.15 1.65 8.03 -2.39 -0.02 1.63 16 Total: -1.00 -79.11 343.20 7.81 -71.30 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 1.04 Total: 22.24 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 4.28 Total: -36.25 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.30 Total: -56.45 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: 0.16 Total: -47.39 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -79.11 7.81 -71.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345804.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.621 kcal (2) G-P(sol) polarization free energy of solvation -79.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds