Wall clock time and date at job start Tue Mar 31 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47315 * 2 1 4 4 C 1.50695 * 112.85289 * 55.23004 * 3 2 1 5 5 O 1.20829 * 120.00541 * 233.92127 * 4 3 2 6 6 O 1.34270 * 119.99872 * 53.92591 * 4 3 2 7 7 C 1.35923 * 117.00120 * 185.14452 * 6 4 3 8 8 C 1.38823 * 120.02264 * 245.86655 * 7 6 4 9 9 C 1.38183 * 120.08292 * 180.02562 * 8 7 6 10 10 C 1.38155 * 120.12631 * 0.25786 * 9 8 7 11 11 C 1.38897 * 120.03787 * 359.48874 * 10 9 8 12 12 O 1.35749 * 120.04385 * 180.25050 * 11 10 9 13 13 C 1.34829 * 117.00400 * 186.16407 * 12 11 10 14 14 H 1.07999 * 119.99801 * 5.53815 * 13 12 11 15 15 C 1.38653 * 120.00416 * 185.54294 * 13 12 11 16 16 N 1.31562 * 119.99595 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00131 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47423 * 59.99991 * 17 15 13 19 19 H 1.48506 * 109.46885 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47413 * 299.99613 * 17 15 13 21 21 C 1.38578 * 120.02015 * 65.88695 * 7 6 4 22 22 C 1.53779 * 113.68958 * 186.50249 * 3 2 1 23 23 C 1.53781 * 87.08323 * 89.12369 * 22 3 2 24 24 C 1.53782 * 87.08043 * 25.43332 * 23 22 3 25 25 H 1.08995 * 109.47172 * 184.93876 * 1 2 3 26 26 H 1.09002 * 109.46849 * 304.94082 * 1 2 3 27 27 H 1.09002 * 109.46787 * 64.93247 * 1 2 3 28 28 H 1.09000 * 109.47011 * 239.98914 * 2 1 3 29 29 H 1.09007 * 109.46495 * 119.99847 * 2 1 3 30 30 H 1.07996 * 119.95682 * 0.02562 * 8 7 6 31 31 H 1.08001 * 119.94112 * 179.97438 * 9 8 7 32 32 H 1.08002 * 119.98401 * 179.74440 * 10 9 8 33 33 H 0.97005 * 119.99714 * 180.02562 * 16 15 13 34 34 H 1.07996 * 120.05939 * 359.95909 * 21 7 6 35 35 H 1.09007 * 113.61631 * 203.67413 * 22 3 2 36 36 H 1.09004 * 113.61838 * 334.57431 * 22 3 2 37 37 H 1.08993 * 113.61139 * 270.88200 * 23 22 3 38 38 H 1.09000 * 113.61272 * 139.98522 * 23 22 3 39 39 H 1.09000 * 113.61373 * 220.01865 * 24 23 22 40 40 H 1.09002 * 113.69082 * 89.12622 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4885 2.2582 1.1407 5 8 0.9304 3.3067 0.9193 6 8 1.6174 1.8199 2.4033 7 6 1.0053 2.5475 3.3746 8 6 1.7650 3.2110 4.3284 9 6 1.1439 3.9506 5.3167 10 6 -0.2347 4.0278 5.3621 11 6 -0.9997 3.3703 4.4073 12 8 -2.3542 3.4502 4.4488 13 6 -3.0396 2.6878 3.5731 14 1 -2.5148 1.9853 2.9426 15 6 -4.4181 2.8055 3.4820 16 7 -5.0573 3.6616 4.2497 17 14 -5.3675 1.7496 2.2684 18 1 -5.1501 0.3150 2.5844 19 1 -6.8157 2.0635 2.3662 20 1 -4.8917 2.0303 0.8900 21 6 -0.3777 2.6270 3.4136 22 6 3.5652 1.5585 -0.1595 23 6 3.3253 1.5872 -1.6782 24 6 1.9232 2.1371 -1.3670 25 1 -0.3633 -1.0238 0.0885 26 1 -0.3633 0.5886 0.8425 27 1 -0.3633 0.4354 -0.9309 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 2.8427 3.1491 4.2979 31 1 1.7372 4.4656 6.0578 32 1 -0.7178 4.6031 6.1380 33 1 -6.0218 3.7437 4.1862 34 1 -0.9703 2.1118 2.6723 35 1 3.9760 2.4878 0.2353 36 1 4.1082 0.6765 0.1802 37 1 3.3146 0.5987 -2.1372 38 1 3.9640 2.2940 -2.2078 39 1 1.1406 1.7221 -2.0022 40 1 1.8837 3.2245 -1.3023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841346265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:07 Heat of formation + Delta-G solvation = -65.508739 kcal Electronic energy + Delta-G solvation = -23414.093548 eV Core-core repulsion = 19967.689731 eV Total energy + Delta-G solvation = -3446.403816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29487 -39.49649 -38.43203 -36.70840 -35.67989 -32.59763 -32.30169 -29.78610 -28.93683 -26.92178 -25.83056 -25.40986 -23.54243 -22.58539 -21.63837 -20.79436 -18.85803 -18.25745 -17.66162 -17.02024 -16.21070 -15.94838 -15.31678 -15.11091 -14.67998 -14.34112 -14.21445 -14.01498 -13.62285 -13.44399 -13.05716 -12.74739 -12.63140 -12.54133 -11.92881 -11.87615 -11.67663 -11.56953 -11.40263 -11.23706 -11.10588 -11.02751 -10.85105 -10.55908 -10.51249 -10.44527 -10.33432 -9.98221 -9.53649 -8.86743 -8.11896 -7.34440 -6.48321 -4.07557 1.77923 2.22392 2.43828 3.08878 3.11588 3.15136 3.15848 3.94334 4.16764 4.25842 4.46678 4.51262 4.54826 4.90677 5.06898 5.12238 5.16860 5.24238 5.33036 5.47865 5.56989 5.58849 5.63670 5.68109 5.72427 5.79866 5.87006 5.90010 6.00642 6.07307 6.15904 6.18624 6.22121 6.39446 6.57712 6.91775 7.02875 7.09520 7.14797 7.32618 7.61701 7.95133 8.21981 8.96667 9.63349 10.69173 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.005585 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.828241 B = 5011.823440 C = 6507.907682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.095 4.095 3 C -0.077 4.077 4 C 0.469 3.531 5 O -0.481 6.481 6 O -0.293 6.293 7 C 0.122 3.878 8 C -0.213 4.213 9 C -0.064 4.064 10 C -0.190 4.190 11 C 0.165 3.835 12 O -0.170 6.170 13 C -0.392 4.392 14 H 0.089 0.911 15 C 0.042 3.958 16 N -0.860 5.860 17 Si 0.938 3.062 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.269 1.269 21 C -0.235 4.235 22 C -0.121 4.121 23 C -0.139 4.139 24 C -0.117 4.117 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.272 0.728 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.961 -6.616 -9.104 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.133 4.133 3 C -0.078 4.078 4 C 0.311 3.689 5 O -0.365 6.365 6 O -0.208 6.208 7 C 0.081 3.919 8 C -0.232 4.232 9 C -0.082 4.082 10 C -0.209 4.209 11 C 0.110 3.890 12 O -0.073 6.073 13 C -0.468 4.468 14 H 0.106 0.894 15 C -0.162 4.162 16 N -0.494 5.494 17 Si 0.763 3.237 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.194 1.194 21 C -0.255 4.255 22 C -0.158 4.158 23 C -0.176 4.176 24 C -0.155 4.155 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.357 -6.059 -8.979 17.985 hybrid contribution -0.612 -0.433 -0.541 0.925 sum 13.745 -6.492 -9.520 17.936 Atomic orbital electron populations 1.21843 0.94900 1.02463 1.02530 1.21332 0.96632 0.91930 1.03359 1.22026 0.97879 0.96531 0.91407 1.23740 0.76825 0.85064 0.83258 1.90715 1.38485 1.23100 1.84240 1.84531 1.68399 1.52135 1.15769 1.18292 0.90487 0.94567 0.88519 1.20419 0.98796 1.03998 1.00000 1.20482 0.93491 0.97139 0.97101 1.20312 0.92964 1.06472 1.01166 1.19133 0.85246 0.92409 0.92175 1.84011 1.11495 1.58592 1.53208 1.21237 0.89430 1.17783 1.18342 0.89379 1.25273 0.95690 0.97414 0.97867 1.70027 1.09315 1.33366 1.36674 0.85817 0.78509 0.79518 0.79893 1.19365 1.20076 1.19392 1.21184 0.93105 1.07659 1.03514 1.22957 0.92703 1.03327 0.96863 1.22829 0.97074 1.01802 0.95887 1.22994 0.97726 1.01589 0.93144 0.91766 0.92503 0.92271 0.90355 0.90281 0.86759 0.85997 0.85906 0.91852 0.85277 0.89505 0.90002 0.89602 0.90713 0.90323 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.64 37.16 0.36 -1.67 16 2 C -0.10 -1.03 5.25 -26.73 -0.14 -1.17 16 3 C -0.08 -0.96 0.92 -154.85 -0.14 -1.10 16 4 C 0.47 8.20 5.40 36.00 0.19 8.39 16 5 O -0.48 -10.17 15.23 -18.75 -0.29 -10.46 16 6 O -0.29 -5.46 9.97 -23.63 -0.24 -5.69 16 7 C 0.12 2.57 5.37 -39.24 -0.21 2.36 16 8 C -0.21 -4.02 9.98 -39.39 -0.39 -4.42 16 9 C -0.06 -1.17 10.03 -39.63 -0.40 -1.57 16 10 C -0.19 -4.10 9.99 -39.37 -0.39 -4.49 16 11 C 0.16 4.16 6.64 -39.13 -0.26 3.90 16 12 O -0.17 -4.97 9.76 0.05 0.00 -4.97 16 13 C -0.39 -11.27 9.44 30.89 0.29 -10.98 16 14 H 0.09 2.39 5.30 -52.49 -0.28 2.11 16 15 C 0.04 1.19 5.49 -17.51 -0.10 1.09 16 16 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 17 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 21 C -0.23 -5.60 8.21 -39.25 -0.32 -5.92 16 22 C -0.12 -1.17 7.22 -25.92 -0.19 -1.36 16 23 C -0.14 -1.13 7.73 -25.92 -0.20 -1.33 16 24 C -0.12 -1.30 6.87 -25.92 -0.18 -1.47 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.90 7.09 -51.93 -0.37 0.53 16 27 H 0.06 0.71 7.58 -51.93 -0.39 0.31 16 28 H 0.08 0.64 7.31 -51.93 -0.38 0.26 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 31 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.13 3.18 5.72 -52.49 -0.30 2.88 16 35 H 0.09 0.89 8.09 -51.92 -0.42 0.47 16 36 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.09 0.57 7.61 -51.93 -0.40 0.17 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.81 7.53 -51.93 -0.39 0.42 16 40 H 0.10 1.21 7.50 -51.93 -0.39 0.82 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -32.84 336.43 -7.20 -40.04 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.41 Total: 4.52 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -2.08 Total: -19.74 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.76 Total: -24.67 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.52 Total: -21.12 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.84 -7.20 -40.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841346265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.471 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds