Wall clock time and date at job start Tue Mar 31 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47315 * 2 1 4 4 C 1.50695 * 112.85289 * 55.23004 * 3 2 1 5 5 O 1.20829 * 120.00541 * 233.92127 * 4 3 2 6 6 O 1.34270 * 119.99872 * 53.92591 * 4 3 2 7 7 C 1.35923 * 117.00120 * 185.14452 * 6 4 3 8 8 C 1.38823 * 120.02264 * 245.86655 * 7 6 4 9 9 C 1.38183 * 120.08292 * 180.02562 * 8 7 6 10 10 C 1.38155 * 120.12631 * 0.25786 * 9 8 7 11 11 C 1.38897 * 120.03787 * 359.48874 * 10 9 8 12 12 O 1.35749 * 120.04385 * 180.25050 * 11 10 9 13 13 C 1.34829 * 117.00400 * 186.16407 * 12 11 10 14 14 H 1.07999 * 119.99801 * 5.53815 * 13 12 11 15 15 C 1.38653 * 120.00416 * 185.54294 * 13 12 11 16 16 N 1.31562 * 119.99595 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00131 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47423 * 59.99991 * 17 15 13 19 19 H 1.48506 * 109.46885 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47413 * 299.99613 * 17 15 13 21 21 C 1.38578 * 120.02015 * 65.88695 * 7 6 4 22 22 C 1.53779 * 113.68958 * 186.50249 * 3 2 1 23 23 C 1.53781 * 87.08323 * 89.12369 * 22 3 2 24 24 C 1.53782 * 87.08043 * 25.43332 * 23 22 3 25 25 H 1.08995 * 109.47172 * 184.93876 * 1 2 3 26 26 H 1.09002 * 109.46849 * 304.94082 * 1 2 3 27 27 H 1.09002 * 109.46787 * 64.93247 * 1 2 3 28 28 H 1.09000 * 109.47011 * 239.98914 * 2 1 3 29 29 H 1.09007 * 109.46495 * 119.99847 * 2 1 3 30 30 H 1.07996 * 119.95682 * 0.02562 * 8 7 6 31 31 H 1.08001 * 119.94112 * 179.97438 * 9 8 7 32 32 H 1.08002 * 119.98401 * 179.74440 * 10 9 8 33 33 H 0.97005 * 119.99714 * 180.02562 * 16 15 13 34 34 H 1.07996 * 120.05939 * 359.95909 * 21 7 6 35 35 H 1.09007 * 113.61631 * 203.67413 * 22 3 2 36 36 H 1.09004 * 113.61838 * 334.57431 * 22 3 2 37 37 H 1.08993 * 113.61139 * 270.88200 * 23 22 3 38 38 H 1.09000 * 113.61272 * 139.98522 * 23 22 3 39 39 H 1.09000 * 113.61373 * 220.01865 * 24 23 22 40 40 H 1.09002 * 113.69082 * 89.12622 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4885 2.2582 1.1407 5 8 0.9304 3.3067 0.9193 6 8 1.6174 1.8199 2.4033 7 6 1.0053 2.5475 3.3746 8 6 1.7650 3.2110 4.3284 9 6 1.1439 3.9506 5.3167 10 6 -0.2347 4.0278 5.3621 11 6 -0.9997 3.3703 4.4073 12 8 -2.3542 3.4502 4.4488 13 6 -3.0396 2.6878 3.5731 14 1 -2.5148 1.9853 2.9426 15 6 -4.4181 2.8055 3.4820 16 7 -5.0573 3.6616 4.2497 17 14 -5.3675 1.7496 2.2684 18 1 -5.1501 0.3150 2.5844 19 1 -6.8157 2.0635 2.3662 20 1 -4.8917 2.0303 0.8900 21 6 -0.3777 2.6270 3.4136 22 6 3.5652 1.5585 -0.1595 23 6 3.3253 1.5872 -1.6782 24 6 1.9232 2.1371 -1.3670 25 1 -0.3633 -1.0238 0.0885 26 1 -0.3633 0.5886 0.8425 27 1 -0.3633 0.4354 -0.9309 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 2.8427 3.1491 4.2979 31 1 1.7372 4.4656 6.0578 32 1 -0.7178 4.6031 6.1380 33 1 -6.0218 3.7437 4.1862 34 1 -0.9703 2.1118 2.6723 35 1 3.9760 2.4878 0.2353 36 1 4.1082 0.6765 0.1802 37 1 3.3146 0.5987 -2.1372 38 1 3.9640 2.2940 -2.2078 39 1 1.1406 1.7221 -2.0022 40 1 1.8837 3.2245 -1.3023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841346265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:06 Heat of formation + Delta-G solvation = -84.281704 kcal Electronic energy + Delta-G solvation = -23414.907605 eV Core-core repulsion = 19967.689731 eV Total energy + Delta-G solvation = -3447.217873 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.66769 -40.92632 -39.96236 -38.30650 -37.36224 -34.38582 -33.49591 -31.47584 -30.70967 -28.06947 -27.41377 -26.65401 -24.85416 -23.72836 -23.34544 -22.21621 -20.17486 -20.02704 -19.33613 -18.20298 -17.80951 -17.43559 -16.92023 -16.36718 -16.20445 -15.93307 -15.66674 -15.52380 -15.10239 -14.87058 -14.65293 -14.22840 -13.79442 -13.69152 -13.49845 -13.26357 -12.99197 -12.88858 -12.76682 -12.59305 -12.52950 -12.30811 -12.22305 -12.03730 -11.98176 -11.65030 -11.36871 -11.26339 -11.16843 -10.88755 -9.81587 -9.19619 -8.56992 -6.26447 0.10658 0.50755 1.03711 1.25851 1.36659 1.42532 1.72028 2.09351 2.68557 3.02146 3.23920 3.32259 3.39288 3.61992 3.73101 3.81856 3.93971 4.13606 4.24826 4.28461 4.36658 4.38496 4.49184 4.70920 4.72397 4.75305 4.77412 4.89675 4.95652 4.96317 4.97097 5.04723 5.10629 5.17783 5.27073 5.30684 5.40754 5.45042 5.47999 5.52260 5.89558 5.96561 6.71901 6.86398 7.61365 8.65182 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.005585 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.828241 B = 5011.823440 C = 6507.907682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.089 4.089 3 C -0.085 4.085 4 C 0.465 3.535 5 O -0.528 6.528 6 O -0.290 6.290 7 C 0.112 3.888 8 C -0.193 4.193 9 C -0.045 4.045 10 C -0.197 4.197 11 C 0.127 3.873 12 O -0.220 6.220 13 C -0.418 4.418 14 H 0.087 0.913 15 C -0.014 4.014 16 N -0.911 5.911 17 Si 1.011 2.989 18 H -0.254 1.254 19 H -0.261 1.261 20 H -0.264 1.264 21 C -0.252 4.252 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.127 4.127 25 H 0.080 0.920 26 H 0.010 0.990 27 H 0.061 0.939 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.157 0.843 31 H 0.178 0.822 32 H 0.132 0.868 33 H 0.276 0.724 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.365 -8.311 -10.445 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.126 4.126 3 C -0.086 4.086 4 C 0.311 3.689 5 O -0.415 6.415 6 O -0.205 6.205 7 C 0.071 3.929 8 C -0.212 4.212 9 C -0.063 4.063 10 C -0.216 4.216 11 C 0.076 3.924 12 O -0.126 6.126 13 C -0.494 4.494 14 H 0.105 0.895 15 C -0.213 4.213 16 N -0.548 5.548 17 Si 0.829 3.171 18 H -0.178 1.178 19 H -0.185 1.185 20 H -0.188 1.188 21 C -0.272 4.272 22 C -0.153 4.153 23 C -0.154 4.154 24 C -0.164 4.164 25 H 0.099 0.901 26 H 0.030 0.970 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.100 0.900 30 H 0.175 0.825 31 H 0.195 0.805 32 H 0.150 0.850 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.827 -7.768 -10.313 22.011 hybrid contribution -1.357 0.148 -0.077 1.367 sum 16.470 -7.620 -10.389 20.911 Atomic orbital electron populations 1.21886 0.96885 1.02599 1.00690 1.21396 0.94773 0.90978 1.05461 1.22482 1.00097 0.96744 0.89309 1.25029 0.75535 0.84939 0.83421 1.90693 1.40711 1.25510 1.84553 1.84564 1.67827 1.51893 1.16175 1.18537 0.89690 0.94805 0.89871 1.21036 1.00842 1.01247 0.98073 1.21090 0.92163 0.95726 0.97315 1.20706 0.94508 1.05943 1.00485 1.19736 0.84571 0.94081 0.94001 1.83962 1.13441 1.60427 1.54749 1.21598 0.90319 1.18668 1.18824 0.89518 1.26522 0.96186 0.98820 0.99769 1.70149 1.09826 1.35783 1.39092 0.84776 0.77245 0.78051 0.76987 1.17786 1.18475 1.18823 1.21138 0.94613 1.08284 1.03142 1.23021 0.90081 1.04057 0.98144 1.22822 0.94334 1.03316 0.94904 1.23067 1.00470 1.00267 0.92598 0.90123 0.97027 0.91953 0.86268 0.89986 0.82500 0.80486 0.85007 0.91447 0.87706 0.90361 0.87562 0.86836 0.89355 0.89713 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.64 71.98 0.69 -3.39 16 2 C -0.09 -1.70 5.25 30.59 0.16 -1.54 16 3 C -0.09 -1.98 0.92 -52.40 -0.05 -2.03 16 4 C 0.47 16.46 5.40 71.23 0.38 16.84 16 5 O -0.53 -23.33 15.23 21.95 0.33 -22.99 16 6 O -0.29 -10.73 9.97 4.49 0.04 -10.68 16 7 C 0.11 4.73 5.37 22.49 0.12 4.85 16 8 C -0.19 -6.75 9.98 22.40 0.22 -6.53 16 9 C -0.05 -1.53 10.03 22.24 0.22 -1.31 16 10 C -0.20 -8.56 9.99 22.41 0.22 -8.34 16 11 C 0.13 6.80 6.64 22.56 0.15 6.95 16 12 O -0.22 -13.85 9.76 -22.72 -0.22 -14.07 16 13 C -0.42 -25.87 9.44 67.92 0.64 -25.23 16 14 H 0.09 5.15 5.30 -2.91 -0.02 5.13 16 15 C -0.01 -0.84 5.49 84.83 0.47 -0.37 16 16 N -0.91 -56.97 13.67 21.61 0.30 -56.67 16 17 Si 1.01 44.68 29.55 68.60 2.03 46.70 16 18 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 21 C -0.25 -12.71 8.21 22.49 0.18 -12.52 16 22 C -0.12 -1.85 7.22 31.12 0.22 -1.63 16 23 C -0.12 -1.43 7.73 31.12 0.24 -1.19 16 24 C -0.13 -2.61 6.87 31.12 0.21 -2.40 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.01 0.36 7.09 -2.39 -0.02 0.35 16 27 H 0.06 1.47 7.58 -2.39 -0.02 1.46 16 28 H 0.12 1.37 7.31 -2.39 -0.02 1.35 16 29 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.16 4.22 8.06 -2.91 -0.02 4.19 16 31 H 0.18 4.09 8.06 -2.91 -0.02 4.07 16 32 H 0.13 5.38 8.06 -2.91 -0.02 5.36 16 33 H 0.28 15.73 8.31 -92.70 -0.77 14.96 16 34 H 0.11 5.68 5.72 -2.91 -0.02 5.67 16 35 H 0.08 1.40 8.09 -2.38 -0.02 1.38 16 36 H 0.11 1.22 8.10 -2.39 -0.02 1.20 16 37 H 0.11 0.84 7.61 -2.39 -0.02 0.82 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.61 7.53 -2.39 -0.02 1.59 16 40 H 0.07 1.83 7.50 -2.39 -0.02 1.81 16 Total: -1.00 -80.12 336.43 7.63 -72.49 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 1.04 Total: 23.06 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 4.10 Total: -37.84 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.30 Total: -56.67 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: 0.16 Total: -47.74 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -80.12 7.63 -72.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841346265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.787 kcal (2) G-P(sol) polarization free energy of solvation -80.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds