Wall clock time and date at job start Tue Mar 31 2020 06:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99673 * 2 1 4 4 C 1.38758 * 120.06169 * 0.25514 * 3 2 1 5 5 C 1.38115 * 119.94686 * 180.27456 * 4 3 2 6 6 C 1.38289 * 120.05605 * 359.72459 * 5 4 3 7 7 C 1.38241 * 120.11102 * 0.02562 * 6 5 4 8 8 C 1.38167 * 120.05585 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.02820 * 179.97438 * 8 7 6 10 10 H 1.08993 * 115.56329 * 154.29169 * 9 8 7 11 11 C 1.53007 * 117.49659 * 8.60406 * 9 8 7 12 12 C 1.52999 * 59.99912 * 252.50856 * 11 9 8 13 13 H 1.09005 * 117.49371 * 107.49076 * 12 11 9 14 14 C 1.50698 * 117.50085 * 252.48459 * 12 11 9 15 15 O 1.20822 * 119.99759 * 68.61313 * 14 12 11 16 16 O 1.34231 * 120.00242 * 248.61125 * 14 12 11 17 17 C 1.45199 * 116.99851 * 180.02562 * 16 14 12 18 18 H 1.08995 * 109.46972 * 30.00065 * 17 16 14 19 19 C 1.52998 * 109.47043 * 269.99637 * 17 16 14 20 20 C 1.50701 * 109.46893 * 150.00435 * 17 16 14 21 21 H 1.08000 * 120.00207 * 34.99117 * 20 17 16 22 22 C 1.37871 * 119.99927 * 214.99910 * 20 17 16 23 23 N 1.31515 * 120.00252 * 184.91306 * 22 20 17 24 24 Si 1.86807 * 120.00158 * 4.90893 * 22 20 17 25 25 H 1.48504 * 109.46980 * 84.83135 * 24 22 20 26 26 H 1.48495 * 109.47398 * 204.83948 * 24 22 20 27 27 H 1.48501 * 109.46897 * 324.83650 * 24 22 20 28 28 H 1.09001 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47100 * 299.99667 * 1 2 3 30 30 H 1.09002 * 109.47566 * 59.99575 * 1 2 3 31 31 H 1.08005 * 120.02399 * 0.02665 * 4 3 2 32 32 H 1.08004 * 119.97545 * 179.74709 * 5 4 3 33 33 H 1.07999 * 119.94347 * 180.02562 * 6 5 4 34 34 H 1.08007 * 119.97051 * 179.97438 * 7 6 5 35 35 H 1.09008 * 117.49433 * 145.01690 * 11 9 8 36 36 H 1.08996 * 117.50140 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47280 * 175.03643 * 19 17 16 38 38 H 1.08995 * 109.47658 * 295.04010 * 19 17 16 39 39 H 1.09003 * 109.47236 * 55.03887 * 19 17 16 40 40 H 0.97008 * 120.00044 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0053 5 6 1.9208 3.6048 -0.0004 6 6 3.3018 3.6758 -0.0057 7 6 4.0559 2.5172 -0.0058 8 6 3.4310 1.2849 -0.0001 9 6 4.2537 0.0222 -0.0008 10 1 3.7700 -0.8544 0.4300 11 6 5.7646 0.1633 0.1951 12 6 5.2023 -0.2023 -1.1801 13 1 5.2314 0.5634 -1.9554 14 6 5.3969 -1.6184 -1.6574 15 8 4.8140 -2.5252 -1.1117 16 8 6.2177 -1.8722 -2.6887 17 6 6.3565 -3.2594 -3.0947 18 1 5.4310 -3.7944 -2.8822 19 6 7.5079 -3.9045 -2.3209 20 6 6.6460 -3.3237 -4.5722 21 1 7.2503 -2.5592 -5.0379 22 6 6.1395 -4.3584 -5.3296 23 7 6.4706 -4.4687 -6.5976 24 14 4.9829 -5.6040 -4.5546 25 1 3.5938 -5.0803 -4.5929 26 1 5.0518 -6.8805 -5.3102 27 1 5.3838 -5.8413 -3.1446 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2127 2.3204 0.0100 32 1 1.3339 4.5115 -0.0004 33 1 3.7921 4.6381 -0.0098 34 1 5.1344 2.5753 -0.0104 35 1 6.2748 -0.6206 0.7549 36 1 6.1635 1.1693 0.3249 37 1 7.5561 -4.9669 -2.5598 38 1 8.4466 -3.4264 -2.6005 39 1 7.3414 -3.7800 -1.2509 40 1 6.1145 -5.1970 -7.1303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842311330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:25 Heat of formation + Delta-G solvation = -75.828370 kcal Electronic energy + Delta-G solvation = -22607.034021 eV Core-core repulsion = 19160.182712 eV Total energy + Delta-G solvation = -3446.851309 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.60537 -39.66265 -37.89698 -36.72453 -35.36840 -33.03681 -31.02773 -30.48757 -30.28948 -27.42980 -25.44778 -24.93209 -23.92074 -22.17675 -21.20494 -20.39513 -19.35352 -18.34309 -17.56557 -16.74375 -16.34497 -15.89155 -15.80415 -15.66941 -15.09823 -14.61494 -14.33637 -14.25009 -13.79908 -13.16873 -12.98173 -12.63621 -12.58072 -12.34033 -12.16484 -12.02415 -11.75837 -11.49128 -11.28589 -11.11185 -11.01518 -10.96099 -10.74600 -10.66570 -10.40651 -9.98093 -9.69061 -9.43135 -9.10959 -8.94414 -8.70013 -8.22349 -6.25780 -4.29436 1.08516 1.27013 2.77045 3.15342 3.22262 3.30436 3.36777 3.39830 3.61945 4.05224 4.28309 4.49002 4.60716 4.81709 4.82614 4.90227 4.93055 4.98409 5.05178 5.14066 5.22373 5.32209 5.33635 5.42377 5.59940 5.73696 5.83189 6.00896 6.04119 6.16414 6.20800 6.30861 6.43913 6.44883 6.54205 6.59927 6.72665 7.16985 7.25428 7.41220 7.56556 8.27431 8.70515 8.85669 9.33735 10.85573 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.003844 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.360877 B = 7282.056694 C = 7828.422104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.138 3.862 4 C -0.209 4.209 5 C -0.085 4.085 6 C -0.156 4.156 7 C -0.081 4.081 8 C -0.082 4.082 9 C -0.077 4.077 10 H 0.130 0.870 11 C -0.145 4.145 12 C -0.149 4.149 13 H 0.133 0.867 14 C 0.481 3.519 15 O -0.524 6.524 16 O -0.343 6.343 17 C 0.181 3.819 18 H 0.047 0.953 19 C -0.152 4.152 20 C -0.518 4.518 21 H 0.086 0.914 22 C 0.082 3.918 23 N -0.882 5.882 24 Si 0.869 3.131 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.261 1.261 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.029 0.971 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.341 14.978 15.574 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.093 3.907 4 C -0.228 4.228 5 C -0.103 4.103 6 C -0.174 4.174 7 C -0.099 4.099 8 C -0.083 4.083 9 C -0.095 4.095 10 H 0.148 0.852 11 C -0.182 4.182 12 C -0.168 4.168 13 H 0.150 0.850 14 C 0.324 3.676 15 O -0.415 6.415 16 O -0.259 6.259 17 C 0.128 3.872 18 H 0.064 0.936 19 C -0.210 4.210 20 C -0.555 4.555 21 H 0.104 0.896 22 C -0.122 4.122 23 N -0.519 5.519 24 Si 0.695 3.305 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.185 1.185 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.424 14.348 15.505 23.132 hybrid contribution -0.995 -0.655 0.126 1.198 sum -10.419 13.693 15.630 23.246 Atomic orbital electron populations 1.23077 0.78504 1.04170 1.01071 1.86180 1.21191 1.26450 1.88167 1.18831 0.91586 0.84474 0.95838 1.21213 0.99995 0.92291 1.09259 1.20922 0.94740 0.96853 0.97776 1.21016 0.93871 0.98287 1.04222 1.20950 1.00296 0.90890 0.97733 1.18484 0.90037 0.94004 1.05730 1.20922 0.90847 0.97400 1.00320 0.85196 1.23167 0.95492 1.03497 0.96002 1.21919 1.06757 0.94706 0.93466 0.84960 1.22362 0.76723 0.89810 0.78697 1.90576 1.47156 1.47180 1.56591 1.86653 1.58531 1.35841 1.44874 1.21009 0.95416 0.75377 0.95401 0.93555 1.22229 1.00324 1.01050 0.97384 1.20811 1.33259 1.11742 0.89701 0.89628 1.24906 0.95371 0.97396 0.94528 1.69858 1.43401 1.31999 1.06647 0.86960 0.82215 0.81099 0.80185 1.19567 1.20703 1.18500 0.88106 0.92795 0.92630 0.85442 0.85896 0.85789 0.84955 0.87639 0.87240 0.92006 0.92360 0.95171 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.14 9.68 -19.42 -0.19 -4.33 16 3 C 0.14 1.78 6.66 -39.21 -0.26 1.51 16 4 C -0.21 -2.15 9.04 -39.43 -0.36 -2.51 16 5 C -0.08 -0.78 10.04 -39.61 -0.40 -1.17 16 6 C -0.16 -1.45 10.04 -39.56 -0.40 -1.84 16 7 C -0.08 -0.85 9.30 -39.61 -0.37 -1.22 16 8 C -0.08 -1.06 5.62 -104.47 -0.59 -1.64 16 9 C -0.08 -1.11 5.25 -91.77 -0.48 -1.59 16 10 H 0.13 2.12 7.30 -51.93 -0.38 1.74 16 11 C -0.14 -1.80 9.56 -26.73 -0.26 -2.05 16 12 C -0.15 -2.40 5.93 -91.77 -0.54 -2.94 16 13 H 0.13 1.96 8.14 -51.93 -0.42 1.54 16 14 C 0.48 10.30 7.71 36.00 0.28 10.58 16 15 O -0.52 -12.41 15.48 -18.75 -0.29 -12.70 16 16 O -0.34 -8.30 9.86 -39.26 -0.39 -8.69 16 17 C 0.18 4.70 2.22 -27.88 -0.06 4.64 16 18 H 0.05 1.26 4.31 -51.93 -0.22 1.04 16 19 C -0.15 -3.48 9.53 37.16 0.35 -3.13 16 20 C -0.52 -15.08 9.24 -34.44 -0.32 -15.40 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 22 C 0.08 2.39 5.47 -17.82 -0.10 2.30 16 23 N -0.88 -26.63 13.96 55.43 0.77 -25.86 16 24 Si 0.87 21.93 26.99 -169.99 -4.59 17.35 16 25 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.26 -6.43 6.82 56.52 0.39 -6.04 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 30 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 31 H 0.13 1.03 6.30 -52.48 -0.33 0.70 16 32 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.13 1.14 6.02 -52.48 -0.32 0.82 16 35 H 0.11 1.31 8.14 -51.92 -0.42 0.89 16 36 H 0.11 1.02 6.18 -51.93 -0.32 0.70 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -33.75 339.22 -7.40 -41.15 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.32 Total: 1.21 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -2.50 Total: -13.25 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.77 Total: -25.86 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.87 Total: -25.72 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.59 Total: 17.35 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.75 -7.40 -41.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842311330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.683 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds