Wall clock time and date at job start Tue Mar 31 2020 06:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99673 * 2 1 4 4 C 1.38758 * 120.06169 * 0.25514 * 3 2 1 5 5 C 1.38115 * 119.94686 * 180.27456 * 4 3 2 6 6 C 1.38289 * 120.05605 * 359.72459 * 5 4 3 7 7 C 1.38241 * 120.11102 * 0.02562 * 6 5 4 8 8 C 1.38167 * 120.05585 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.02820 * 179.97438 * 8 7 6 10 10 H 1.08993 * 115.56329 * 154.29169 * 9 8 7 11 11 C 1.53007 * 117.49659 * 8.60406 * 9 8 7 12 12 C 1.52999 * 59.99912 * 252.50856 * 11 9 8 13 13 H 1.09005 * 117.49371 * 107.49076 * 12 11 9 14 14 C 1.50698 * 117.50085 * 252.48459 * 12 11 9 15 15 O 1.20822 * 119.99759 * 68.61313 * 14 12 11 16 16 O 1.34231 * 120.00242 * 248.61125 * 14 12 11 17 17 C 1.45199 * 116.99851 * 180.02562 * 16 14 12 18 18 H 1.08995 * 109.46972 * 30.00065 * 17 16 14 19 19 C 1.52998 * 109.47043 * 269.99637 * 17 16 14 20 20 C 1.50701 * 109.46893 * 150.00435 * 17 16 14 21 21 H 1.08000 * 120.00207 * 34.99117 * 20 17 16 22 22 C 1.37871 * 119.99927 * 214.99910 * 20 17 16 23 23 N 1.31515 * 120.00252 * 184.91306 * 22 20 17 24 24 Si 1.86807 * 120.00158 * 4.90893 * 22 20 17 25 25 H 1.48504 * 109.46980 * 84.83135 * 24 22 20 26 26 H 1.48495 * 109.47398 * 204.83948 * 24 22 20 27 27 H 1.48501 * 109.46897 * 324.83650 * 24 22 20 28 28 H 1.09001 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47100 * 299.99667 * 1 2 3 30 30 H 1.09002 * 109.47566 * 59.99575 * 1 2 3 31 31 H 1.08005 * 120.02399 * 0.02665 * 4 3 2 32 32 H 1.08004 * 119.97545 * 179.74709 * 5 4 3 33 33 H 1.07999 * 119.94347 * 180.02562 * 6 5 4 34 34 H 1.08007 * 119.97051 * 179.97438 * 7 6 5 35 35 H 1.09008 * 117.49433 * 145.01690 * 11 9 8 36 36 H 1.08996 * 117.50140 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47280 * 175.03643 * 19 17 16 38 38 H 1.08995 * 109.47658 * 295.04010 * 19 17 16 39 39 H 1.09003 * 109.47236 * 55.03887 * 19 17 16 40 40 H 0.97008 * 120.00044 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0053 5 6 1.9208 3.6048 -0.0004 6 6 3.3018 3.6758 -0.0057 7 6 4.0559 2.5172 -0.0058 8 6 3.4310 1.2849 -0.0001 9 6 4.2537 0.0222 -0.0008 10 1 3.7700 -0.8544 0.4300 11 6 5.7646 0.1633 0.1951 12 6 5.2023 -0.2023 -1.1801 13 1 5.2314 0.5634 -1.9554 14 6 5.3969 -1.6184 -1.6574 15 8 4.8140 -2.5252 -1.1117 16 8 6.2177 -1.8722 -2.6887 17 6 6.3565 -3.2594 -3.0947 18 1 5.4310 -3.7944 -2.8822 19 6 7.5079 -3.9045 -2.3209 20 6 6.6460 -3.3237 -4.5722 21 1 7.2503 -2.5592 -5.0379 22 6 6.1395 -4.3584 -5.3296 23 7 6.4706 -4.4687 -6.5976 24 14 4.9829 -5.6040 -4.5546 25 1 3.5938 -5.0803 -4.5929 26 1 5.0518 -6.8805 -5.3102 27 1 5.3838 -5.8413 -3.1446 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2127 2.3204 0.0100 32 1 1.3339 4.5115 -0.0004 33 1 3.7921 4.6381 -0.0098 34 1 5.1344 2.5753 -0.0104 35 1 6.2748 -0.6206 0.7549 36 1 6.1635 1.1693 0.3249 37 1 7.5561 -4.9669 -2.5598 38 1 8.4466 -3.4264 -2.6005 39 1 7.3414 -3.7800 -1.2509 40 1 6.1145 -5.1970 -7.1303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842311330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:25 Heat of formation + Delta-G solvation = -95.496422 kcal Electronic energy + Delta-G solvation = -22607.886892 eV Core-core repulsion = 19160.182712 eV Total energy + Delta-G solvation = -3447.704180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.73561 -41.06109 -38.96313 -37.95086 -36.94627 -35.19879 -32.66176 -31.73899 -31.04180 -28.16045 -27.50939 -26.40525 -24.83674 -23.07156 -22.78995 -21.56481 -20.97119 -19.50179 -19.14722 -18.51143 -17.76695 -17.04160 -16.86272 -16.67741 -16.62209 -16.21174 -15.35250 -15.22125 -15.03522 -14.66135 -14.50421 -14.38974 -13.77496 -13.66490 -13.64968 -13.09127 -13.00011 -12.95838 -12.86163 -12.62297 -12.33291 -12.04175 -11.99325 -11.92264 -11.77697 -11.55696 -11.44057 -11.34562 -11.19230 -10.91006 -9.74646 -9.05811 -8.50226 -6.59885 0.29050 0.49610 1.16779 1.22420 1.25581 1.36298 1.87893 2.16728 2.40564 2.60791 2.87213 3.00834 3.51952 3.61965 3.79019 3.90257 4.07808 4.11372 4.18569 4.21641 4.28689 4.34875 4.44322 4.54163 4.54955 4.58799 4.66861 4.68224 4.73355 4.84793 4.92622 5.06370 5.10931 5.27992 5.35380 5.40575 5.53179 5.61403 5.63386 5.89405 6.13114 6.47103 6.48187 6.89894 7.08711 8.65216 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.003844 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.360877 B = 7282.056694 C = 7828.422104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.112 3.888 4 C -0.214 4.214 5 C -0.083 4.083 6 C -0.156 4.156 7 C -0.082 4.082 8 C -0.109 4.109 9 C -0.071 4.071 10 H 0.102 0.898 11 C -0.113 4.113 12 C -0.170 4.170 13 H 0.145 0.855 14 C 0.476 3.524 15 O -0.552 6.552 16 O -0.357 6.357 17 C 0.180 3.820 18 H 0.034 0.966 19 C -0.146 4.146 20 C -0.533 4.533 21 H 0.049 0.951 22 C 0.037 3.963 23 N -0.921 5.921 24 Si 0.927 3.073 25 H -0.272 1.272 26 H -0.262 1.262 27 H -0.252 1.252 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.106 0.894 36 H 0.150 0.850 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.998 16.795 17.404 26.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.067 3.933 4 C -0.232 4.232 5 C -0.101 4.101 6 C -0.174 4.174 7 C -0.100 4.100 8 C -0.109 4.109 9 C -0.090 4.090 10 H 0.120 0.880 11 C -0.150 4.150 12 C -0.189 4.189 13 H 0.162 0.838 14 C 0.321 3.679 15 O -0.444 6.444 16 O -0.273 6.273 17 C 0.127 3.873 18 H 0.052 0.948 19 C -0.203 4.203 20 C -0.570 4.570 21 H 0.067 0.933 22 C -0.164 4.164 23 N -0.559 5.559 24 Si 0.750 3.250 25 H -0.197 1.197 26 H -0.186 1.186 27 H -0.176 1.176 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.124 0.876 36 H 0.167 0.833 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.078 16.179 17.344 25.771 hybrid contribution -0.833 -1.077 -0.424 1.426 sum -10.911 15.102 16.920 25.168 Atomic orbital electron populations 1.23296 0.76753 1.05048 1.02386 1.86124 1.23301 1.27595 1.88591 1.19180 0.92082 0.85030 0.97057 1.21487 1.00977 0.91980 1.08772 1.21359 0.95233 0.97416 0.96069 1.21413 0.94072 0.99047 1.02838 1.21217 1.01473 0.90313 0.96980 1.18576 0.90199 0.94054 1.08095 1.20802 0.92094 0.97536 0.98545 0.88009 1.23404 0.94113 1.05475 0.91959 1.21978 1.10337 0.91277 0.95327 0.83765 1.23351 0.75260 0.91893 0.77377 1.90550 1.47948 1.48679 1.57233 1.86614 1.59668 1.34587 1.46452 1.20850 0.95900 0.76482 0.94069 0.94806 1.22128 0.99256 1.00970 0.97975 1.20933 1.33283 1.11200 0.91629 0.93277 1.25633 0.96665 0.99202 0.94916 1.69953 1.44681 1.33227 1.08023 0.86045 0.79688 0.79326 0.79941 1.19728 1.18637 1.17586 0.87591 0.90885 0.91804 0.83659 0.82958 0.82933 0.82985 0.87596 0.83253 0.91602 0.91729 0.93400 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.34 -9.41 9.68 -92.40 -0.89 -10.30 16 3 C 0.11 2.80 6.66 22.51 0.15 2.95 16 4 C -0.21 -3.98 9.04 22.36 0.20 -3.78 16 5 C -0.08 -1.24 10.04 22.25 0.22 -1.02 16 6 C -0.16 -2.32 10.04 22.28 0.22 -2.10 16 7 C -0.08 -1.50 9.30 22.25 0.21 -1.29 16 8 C -0.11 -2.68 5.62 -19.77 -0.11 -2.79 16 9 C -0.07 -2.03 5.25 -11.54 -0.06 -2.09 16 10 H 0.10 3.45 7.30 -2.39 -0.02 3.44 16 11 C -0.11 -2.58 9.56 30.60 0.29 -2.28 16 12 C -0.17 -5.38 5.93 -11.54 -0.07 -5.45 16 13 H 0.14 4.16 8.14 -2.38 -0.02 4.14 16 14 C 0.48 20.61 7.71 71.24 0.55 21.16 16 15 O -0.55 -26.58 15.48 21.97 0.34 -26.24 16 16 O -0.36 -17.57 9.86 -51.42 -0.51 -18.08 16 17 C 0.18 9.50 2.22 29.85 0.07 9.57 16 18 H 0.03 1.86 4.31 -2.39 -0.01 1.85 16 19 C -0.15 -6.59 9.53 71.98 0.69 -5.91 16 20 C -0.53 -31.96 9.24 25.60 0.24 -31.72 16 21 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 22 C 0.04 2.19 5.47 84.65 0.46 2.65 16 23 N -0.92 -56.65 13.96 21.45 0.30 -56.35 16 24 Si 0.93 45.43 26.99 68.60 1.85 47.28 16 25 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 26 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.25 -11.91 6.82 99.48 0.68 -11.24 16 28 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 0.95 7.65 -2.39 -0.02 0.93 16 30 H 0.06 0.97 7.67 -2.39 -0.02 0.95 16 31 H 0.15 2.03 6.30 -2.91 -0.02 2.01 16 32 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 33 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.15 2.01 6.02 -2.91 -0.02 1.99 16 35 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.15 2.18 6.18 -2.39 -0.01 2.17 16 37 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.28 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -75.83 339.22 6.28 -69.55 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 1.02 Total: 14.79 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 4.17 Total: -20.65 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.30 Total: -56.35 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -1.06 Total: -54.62 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.85 Total: 47.28 kcal Total: -75.83 6.28 -69.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842311330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.950 kcal (2) G-P(sol) polarization free energy of solvation -75.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds