Wall clock time and date at job start Tue Mar 31 2020 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35901 * 116.99805 * 2 1 4 4 C 1.38758 * 120.05928 * 0.25791 * 3 2 1 5 5 C 1.38118 * 119.94618 * 180.27091 * 4 3 2 6 6 C 1.38293 * 120.05687 * 359.72781 * 5 4 3 7 7 C 1.38247 * 120.10997 * 0.02562 * 6 5 4 8 8 C 1.38174 * 120.05501 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.02238 * 179.97438 * 8 7 6 10 10 H 1.08999 * 115.55804 * 154.31210 * 9 8 7 11 11 C 1.53069 * 117.51740 * 8.60493 * 9 8 7 12 12 C 1.53000 * 59.98584 * 252.52208 * 11 9 8 13 13 H 1.09002 * 117.49833 * 107.50105 * 12 11 9 14 14 C 1.50697 * 117.50034 * 252.49893 * 12 11 9 15 15 O 1.20826 * 120.00094 * 68.74827 * 14 12 11 16 16 O 1.34225 * 120.00155 * 248.74712 * 14 12 11 17 17 C 1.45200 * 117.00401 * 180.02562 * 16 14 12 18 18 H 1.09005 * 109.46851 * 329.99382 * 17 16 14 19 19 C 1.52994 * 109.47768 * 89.99702 * 17 16 14 20 20 C 1.50703 * 109.47243 * 209.99997 * 17 16 14 21 21 H 1.08005 * 119.99911 * 359.97438 * 20 17 16 22 22 C 1.37874 * 120.00198 * 179.97438 * 20 17 16 23 23 N 1.31514 * 120.00116 * 179.97438 * 22 20 17 24 24 Si 1.86801 * 119.99758 * 0.02562 * 22 20 17 25 25 H 1.48498 * 109.47344 * 89.99640 * 24 22 20 26 26 H 1.48508 * 109.46870 * 209.99571 * 24 22 20 27 27 H 1.48494 * 109.47238 * 329.99097 * 24 22 20 28 28 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47382 * 299.99745 * 1 2 3 30 30 H 1.09000 * 109.47149 * 59.99907 * 1 2 3 31 31 H 1.08000 * 120.02086 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.97329 * 179.73846 * 5 4 3 33 33 H 1.07992 * 119.94578 * 180.02562 * 6 5 4 34 34 H 1.07994 * 119.97309 * 180.02562 * 7 6 5 35 35 H 1.09008 * 117.49334 * 145.03764 * 11 9 8 36 36 H 1.08999 * 117.51639 * 359.97438 * 11 9 8 37 37 H 1.08999 * 109.46959 * 300.00605 * 19 17 16 38 38 H 1.09005 * 109.47196 * 59.99891 * 19 17 16 39 39 H 1.09001 * 109.47661 * 180.02562 * 19 17 16 40 40 H 0.97000 * 120.00211 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 0.0054 5 6 1.9207 3.6048 -0.0003 6 6 3.3018 3.6759 -0.0056 7 6 4.0559 2.5172 -0.0059 8 6 3.4310 1.2848 -0.0002 9 6 4.2537 0.0223 -0.0011 10 1 3.7700 -0.8545 0.4294 11 6 5.7653 0.1630 0.1949 12 6 5.2025 -0.2019 -1.1803 13 1 5.2317 0.5639 -1.9554 14 6 5.3962 -1.6180 -1.6580 15 8 4.8112 -2.5245 -1.1140 16 8 6.2187 -1.8723 -2.6878 17 6 6.3566 -3.2593 -3.0944 18 1 6.2143 -3.9074 -2.2295 19 6 5.3045 -3.5868 -4.1557 20 6 7.7331 -3.4806 -3.6666 21 1 8.4341 -2.6606 -3.7198 22 6 8.0977 -4.7298 -4.1223 23 7 9.2987 -4.9227 -4.6221 24 14 6.8851 -6.1478 -4.0310 25 1 6.0865 -6.1976 -5.2820 26 1 7.6270 -7.4237 -3.8662 27 1 5.9780 -5.9495 -2.8722 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2127 2.3203 0.0100 32 1 1.3338 4.5114 -0.0003 33 1 3.7920 4.6381 -0.0096 34 1 5.1343 2.5753 -0.0097 35 1 6.2754 -0.6213 0.7542 36 1 6.1648 1.1689 0.3240 37 1 4.3089 -3.4268 -3.7419 38 1 5.4468 -2.9388 -5.0206 39 1 5.4077 -4.6282 -4.4607 40 1 9.5551 -5.8015 -4.9431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842311331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:28 Heat of formation + Delta-G solvation = -67.146412 kcal Electronic energy + Delta-G solvation = -22556.575263 eV Core-core repulsion = 19110.100432 eV Total energy + Delta-G solvation = -3446.474831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.64578 -39.73605 -37.94455 -36.78236 -35.44812 -33.16131 -31.05902 -30.53590 -30.32596 -27.47473 -25.41095 -24.92853 -23.95183 -22.22021 -21.35683 -20.49771 -19.43121 -18.37320 -17.45558 -16.61658 -16.39182 -15.94958 -15.90190 -15.74538 -15.17288 -14.67774 -14.62921 -14.13803 -13.86225 -13.24671 -13.04228 -12.85571 -12.57300 -12.29961 -12.20405 -12.16691 -11.76073 -11.57317 -11.44301 -11.32759 -11.05157 -10.90573 -10.77164 -10.44462 -10.19627 -9.93101 -9.73102 -9.55950 -9.10294 -8.97851 -8.66969 -8.26245 -6.20936 -4.23054 1.04955 1.23340 2.71470 3.10877 3.20188 3.31754 3.32668 3.35767 3.57583 4.02717 4.28397 4.45734 4.57207 4.78637 4.79900 4.86639 4.90268 4.93453 5.06805 5.10308 5.19299 5.27846 5.29911 5.39438 5.51351 5.71264 5.79597 5.99456 6.00840 6.13049 6.19598 6.27781 6.31494 6.41202 6.43575 6.56469 6.63779 7.06026 7.21200 7.39799 7.55029 8.26720 8.65436 8.86829 9.36394 10.91228 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.003500 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.162772 B = 7997.454996 C = 8641.104833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.138 3.862 4 C -0.209 4.209 5 C -0.085 4.085 6 C -0.155 4.155 7 C -0.081 4.081 8 C -0.082 4.082 9 C -0.077 4.077 10 H 0.131 0.869 11 C -0.143 4.143 12 C -0.149 4.149 13 H 0.132 0.868 14 C 0.483 3.517 15 O -0.520 6.520 16 O -0.337 6.337 17 C 0.190 3.810 18 H 0.046 0.954 19 C -0.170 4.170 20 C -0.524 4.524 21 H 0.087 0.913 22 C 0.079 3.921 23 N -0.889 5.889 24 Si 0.879 3.121 25 H -0.273 1.273 26 H -0.290 1.290 27 H -0.262 1.262 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.370 16.402 10.544 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.092 3.908 4 C -0.228 4.228 5 C -0.103 4.103 6 C -0.174 4.174 7 C -0.098 4.098 8 C -0.083 4.083 9 C -0.095 4.095 10 H 0.148 0.852 11 C -0.180 4.180 12 C -0.168 4.168 13 H 0.150 0.850 14 C 0.326 3.674 15 O -0.410 6.410 16 O -0.252 6.252 17 C 0.137 3.863 18 H 0.063 0.937 19 C -0.227 4.227 20 C -0.562 4.562 21 H 0.105 0.895 22 C -0.124 4.124 23 N -0.526 5.526 24 Si 0.708 3.292 25 H -0.200 1.200 26 H -0.217 1.217 27 H -0.187 1.187 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.300 15.753 10.575 25.014 hybrid contribution -0.920 -0.794 -0.229 1.237 sum -17.220 14.959 10.346 25.047 Atomic orbital electron populations 1.23072 0.78527 1.04144 1.01076 1.86176 1.21165 1.26467 1.88202 1.18827 0.91568 0.84453 0.95920 1.21210 0.99981 0.92293 1.09297 1.20927 0.94743 0.96860 0.97761 1.21027 0.93865 0.98318 1.04151 1.20971 1.00362 0.90883 0.97626 1.18486 0.90018 0.94006 1.05750 1.20945 0.90956 0.97410 1.00173 0.85152 1.23202 0.95310 1.03685 0.95790 1.21866 1.06998 0.94320 0.93630 0.84981 1.22335 0.76661 0.89974 0.78472 1.90591 1.46531 1.47041 1.56826 1.86498 1.58466 1.34762 1.45503 1.20931 0.96290 0.75209 0.93918 0.93651 1.22519 0.98014 1.01238 1.00923 1.20796 0.95965 0.97725 1.41696 0.89464 1.24729 0.95364 0.97986 0.94290 1.69838 1.18721 1.23578 1.40467 0.86967 0.81061 0.81782 0.79356 1.19993 1.21677 1.18705 0.88117 0.92763 0.92690 0.85452 0.85892 0.85762 0.84893 0.87406 0.87153 0.94399 0.91777 0.92558 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.90 9.68 -19.43 -0.19 -4.09 16 3 C 0.14 1.68 6.66 -39.21 -0.26 1.42 16 4 C -0.21 -2.03 9.04 -39.43 -0.36 -2.39 16 5 C -0.08 -0.73 10.04 -39.61 -0.40 -1.13 16 6 C -0.16 -1.38 10.04 -39.56 -0.40 -1.78 16 7 C -0.08 -0.82 9.30 -39.60 -0.37 -1.19 16 8 C -0.08 -1.01 5.62 -104.47 -0.59 -1.60 16 9 C -0.08 -1.07 5.25 -91.74 -0.48 -1.56 16 10 H 0.13 2.07 7.30 -51.93 -0.38 1.69 16 11 C -0.14 -1.80 9.57 -26.70 -0.26 -2.05 16 12 C -0.15 -2.33 5.93 -91.77 -0.54 -2.87 16 13 H 0.13 1.85 8.14 -51.93 -0.42 1.42 16 14 C 0.48 10.11 7.71 36.00 0.28 10.39 16 15 O -0.52 -12.06 15.48 -18.75 -0.29 -12.35 16 16 O -0.34 -8.04 9.86 -39.25 -0.39 -8.42 16 17 C 0.19 4.96 2.15 -27.88 -0.06 4.90 16 18 H 0.05 1.25 6.21 -51.93 -0.32 0.92 16 19 C -0.17 -4.01 9.03 37.15 0.34 -3.68 16 20 C -0.52 -15.34 9.48 -34.44 -0.33 -15.67 16 21 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 22 C 0.08 2.31 5.45 -17.82 -0.10 2.22 16 23 N -0.89 -27.05 13.96 55.43 0.77 -26.27 16 24 Si 0.88 22.03 24.37 -169.99 -4.14 17.88 16 25 H -0.27 -6.56 6.87 56.52 0.39 -6.17 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.26 -6.51 6.53 56.52 0.37 -6.14 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 30 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 31 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 32 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.13 1.11 6.02 -52.49 -0.32 0.80 16 35 H 0.11 1.40 8.14 -51.92 -0.42 0.98 16 36 H 0.11 1.05 6.18 -51.93 -0.32 0.73 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.06 1.34 3.27 -51.93 -0.17 1.17 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -33.84 332.75 -6.95 -40.79 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.20 Total: 1.23 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -2.53 Total: -13.77 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.77 Total: -26.27 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.87 Total: -24.86 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.84 -6.95 -40.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842311331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.360 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds