Wall clock time and date at job start Tue Mar 31 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35901 * 116.99805 * 2 1 4 4 C 1.38758 * 120.05928 * 0.25791 * 3 2 1 5 5 C 1.38118 * 119.94618 * 180.27091 * 4 3 2 6 6 C 1.38293 * 120.05687 * 359.72781 * 5 4 3 7 7 C 1.38247 * 120.10997 * 0.02562 * 6 5 4 8 8 C 1.38174 * 120.05501 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.02238 * 179.97438 * 8 7 6 10 10 H 1.08999 * 115.55804 * 154.31210 * 9 8 7 11 11 C 1.53069 * 117.51740 * 8.60493 * 9 8 7 12 12 C 1.53000 * 59.98584 * 252.52208 * 11 9 8 13 13 H 1.09002 * 117.49833 * 107.50105 * 12 11 9 14 14 C 1.50697 * 117.50034 * 252.49893 * 12 11 9 15 15 O 1.20826 * 120.00094 * 68.74827 * 14 12 11 16 16 O 1.34225 * 120.00155 * 248.74712 * 14 12 11 17 17 C 1.45200 * 117.00401 * 180.02562 * 16 14 12 18 18 H 1.09005 * 109.46851 * 329.99382 * 17 16 14 19 19 C 1.52994 * 109.47768 * 89.99702 * 17 16 14 20 20 C 1.50703 * 109.47243 * 209.99997 * 17 16 14 21 21 H 1.08005 * 119.99911 * 359.97438 * 20 17 16 22 22 C 1.37874 * 120.00198 * 179.97438 * 20 17 16 23 23 N 1.31514 * 120.00116 * 179.97438 * 22 20 17 24 24 Si 1.86801 * 119.99758 * 0.02562 * 22 20 17 25 25 H 1.48498 * 109.47344 * 89.99640 * 24 22 20 26 26 H 1.48508 * 109.46870 * 209.99571 * 24 22 20 27 27 H 1.48494 * 109.47238 * 329.99097 * 24 22 20 28 28 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47382 * 299.99745 * 1 2 3 30 30 H 1.09000 * 109.47149 * 59.99907 * 1 2 3 31 31 H 1.08000 * 120.02086 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.97329 * 179.73846 * 5 4 3 33 33 H 1.07992 * 119.94578 * 180.02562 * 6 5 4 34 34 H 1.07994 * 119.97309 * 180.02562 * 7 6 5 35 35 H 1.09008 * 117.49334 * 145.03764 * 11 9 8 36 36 H 1.08999 * 117.51639 * 359.97438 * 11 9 8 37 37 H 1.08999 * 109.46959 * 300.00605 * 19 17 16 38 38 H 1.09005 * 109.47196 * 59.99891 * 19 17 16 39 39 H 1.09001 * 109.47661 * 180.02562 * 19 17 16 40 40 H 0.97000 * 120.00211 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 0.0054 5 6 1.9207 3.6048 -0.0003 6 6 3.3018 3.6759 -0.0056 7 6 4.0559 2.5172 -0.0059 8 6 3.4310 1.2848 -0.0002 9 6 4.2537 0.0223 -0.0011 10 1 3.7700 -0.8545 0.4294 11 6 5.7653 0.1630 0.1949 12 6 5.2025 -0.2019 -1.1803 13 1 5.2317 0.5639 -1.9554 14 6 5.3962 -1.6180 -1.6580 15 8 4.8112 -2.5245 -1.1140 16 8 6.2187 -1.8723 -2.6878 17 6 6.3566 -3.2593 -3.0944 18 1 6.2143 -3.9074 -2.2295 19 6 5.3045 -3.5868 -4.1557 20 6 7.7331 -3.4806 -3.6666 21 1 8.4341 -2.6606 -3.7198 22 6 8.0977 -4.7298 -4.1223 23 7 9.2987 -4.9227 -4.6221 24 14 6.8851 -6.1478 -4.0310 25 1 6.0865 -6.1976 -5.2820 26 1 7.6270 -7.4237 -3.8662 27 1 5.9780 -5.9495 -2.8722 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2127 2.3203 0.0100 32 1 1.3338 4.5114 -0.0003 33 1 3.7920 4.6381 -0.0096 34 1 5.1343 2.5753 -0.0097 35 1 6.2754 -0.6213 0.7542 36 1 6.1648 1.1689 0.3240 37 1 4.3089 -3.4268 -3.7419 38 1 5.4468 -2.9388 -5.0206 39 1 5.4077 -4.6282 -4.4607 40 1 9.5551 -5.8015 -4.9431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842311331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:27 Heat of formation + Delta-G solvation = -87.568858 kcal Electronic energy + Delta-G solvation = -22557.460847 eV Core-core repulsion = 19110.100432 eV Total energy + Delta-G solvation = -3447.360415 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.77231 -41.08037 -38.98421 -37.99347 -36.98238 -35.31415 -32.74481 -31.74533 -31.03510 -28.14478 -27.42177 -26.48193 -24.85237 -23.22059 -22.84904 -21.62850 -20.97865 -19.35061 -19.05447 -18.49112 -17.89243 -17.11036 -16.99255 -16.65820 -16.57349 -16.39264 -15.35184 -15.18035 -15.11536 -14.79361 -14.52472 -14.34801 -13.99432 -13.74390 -13.62550 -13.36537 -13.04072 -12.90669 -12.85432 -12.33590 -12.27025 -12.02924 -11.93715 -11.83401 -11.76219 -11.67336 -11.48464 -11.33391 -11.25409 -10.85898 -9.74470 -9.05309 -8.46948 -6.56045 0.29120 0.50194 1.12983 1.21548 1.29099 1.38887 1.82564 2.17649 2.41570 2.60396 2.85322 3.00740 3.49126 3.59314 3.75938 3.88737 4.02793 4.10811 4.18171 4.21590 4.29929 4.36519 4.37047 4.45028 4.48903 4.54593 4.66036 4.68849 4.70705 4.75150 4.89394 5.05811 5.10634 5.15000 5.30224 5.40850 5.53671 5.61043 5.62265 5.89710 6.11613 6.47525 6.48101 6.85431 7.09035 8.69071 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.003500 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.162772 B = 7997.454996 C = 8641.104833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.114 3.886 4 C -0.213 4.213 5 C -0.082 4.082 6 C -0.156 4.156 7 C -0.083 4.083 8 C -0.108 4.108 9 C -0.066 4.066 10 H 0.103 0.897 11 C -0.122 4.122 12 C -0.166 4.166 13 H 0.150 0.850 14 C 0.477 3.523 15 O -0.548 6.548 16 O -0.350 6.350 17 C 0.192 3.808 18 H 0.029 0.971 19 C -0.164 4.164 20 C -0.541 4.541 21 H 0.048 0.952 22 C 0.032 3.968 23 N -0.928 5.928 24 Si 0.940 3.060 25 H -0.249 1.249 26 H -0.280 1.280 27 H -0.261 1.261 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.100 0.900 36 H 0.150 0.850 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.229 18.171 11.018 27.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.069 3.931 4 C -0.231 4.231 5 C -0.100 4.100 6 C -0.174 4.174 7 C -0.100 4.100 8 C -0.109 4.109 9 C -0.085 4.085 10 H 0.121 0.879 11 C -0.158 4.158 12 C -0.185 4.185 13 H 0.168 0.832 14 C 0.323 3.677 15 O -0.439 6.439 16 O -0.266 6.266 17 C 0.137 3.863 18 H 0.047 0.953 19 C -0.221 4.221 20 C -0.578 4.578 21 H 0.066 0.934 22 C -0.168 4.168 23 N -0.566 5.566 24 Si 0.765 3.235 25 H -0.175 1.175 26 H -0.206 1.206 27 H -0.185 1.185 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.165 0.835 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.119 0.881 36 H 0.167 0.833 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.169 17.546 11.051 27.570 hybrid contribution -0.337 -1.220 -0.308 1.302 sum -18.506 16.326 10.742 26.915 Atomic orbital electron populations 1.23300 0.76710 1.05085 1.02399 1.86125 1.23318 1.27493 1.88562 1.19141 0.91939 0.85064 0.96941 1.21488 1.01004 0.91912 1.08717 1.21359 0.95148 0.97488 0.95993 1.21403 0.94124 0.98978 1.02896 1.21209 1.01406 0.90407 0.97003 1.18540 0.90228 0.93867 1.08251 1.20801 0.91752 0.97628 0.98280 0.87920 1.23420 0.94543 1.05379 0.92477 1.21972 1.10128 0.91048 0.95341 0.83193 1.23367 0.75227 0.92032 0.77104 1.90564 1.47440 1.48552 1.57372 1.86494 1.59787 1.33321 1.46998 1.20655 0.95347 0.76437 0.93810 0.95282 1.22411 0.97885 1.01438 1.00330 1.20936 0.97192 0.97168 1.42550 0.93382 1.25547 0.97163 1.00603 0.93486 1.69950 1.20616 1.24806 1.41251 0.85986 0.78943 0.78266 0.80313 1.17454 1.20629 1.18539 0.87521 0.91060 0.91633 0.83544 0.82955 0.83057 0.83220 0.88147 0.83271 0.92740 0.91037 0.92383 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.34 -8.72 9.68 -92.44 -0.89 -9.62 16 3 C 0.11 2.69 6.66 22.51 0.15 2.84 16 4 C -0.21 -3.65 9.04 22.37 0.20 -3.45 16 5 C -0.08 -1.14 10.04 22.25 0.22 -0.91 16 6 C -0.16 -2.21 10.04 22.28 0.22 -1.98 16 7 C -0.08 -1.46 9.30 22.26 0.21 -1.25 16 8 C -0.11 -2.56 5.62 -19.77 -0.11 -2.67 16 9 C -0.07 -1.85 5.25 -11.52 -0.06 -1.91 16 10 H 0.10 3.42 7.30 -2.39 -0.02 3.41 16 11 C -0.12 -2.92 9.57 30.62 0.29 -2.63 16 12 C -0.17 -5.15 5.93 -11.54 -0.07 -5.21 16 13 H 0.15 4.05 8.14 -2.39 -0.02 4.03 16 14 C 0.48 20.43 7.71 71.24 0.55 20.97 16 15 O -0.55 -26.13 15.48 21.96 0.34 -25.79 16 16 O -0.35 -17.12 9.86 -51.37 -0.51 -17.63 16 17 C 0.19 10.17 2.15 29.85 0.06 10.24 16 18 H 0.03 1.64 6.21 -2.38 -0.01 1.62 16 19 C -0.16 -7.61 9.03 71.98 0.65 -6.96 16 20 C -0.54 -32.67 9.48 25.60 0.24 -32.43 16 21 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 22 C 0.03 1.89 5.45 84.65 0.46 2.35 16 23 N -0.93 -57.47 13.96 21.45 0.30 -57.17 16 24 Si 0.94 45.13 24.37 68.60 1.67 46.80 16 25 H -0.25 -11.02 6.87 99.48 0.68 -10.33 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 27 H -0.26 -12.41 6.53 99.48 0.65 -11.76 16 28 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 0.82 7.65 -2.39 -0.02 0.80 16 30 H 0.07 0.84 7.67 -2.39 -0.02 0.82 16 31 H 0.15 1.81 6.30 -2.91 -0.02 1.79 16 32 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.15 1.99 6.02 -2.91 -0.02 1.97 16 35 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.15 2.37 6.18 -2.39 -0.01 2.36 16 37 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 39 H 0.06 2.65 3.27 -2.39 -0.01 2.65 16 40 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -75.92 332.75 6.02 -69.90 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.97 Total: 15.10 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 4.14 Total: -21.60 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.30 Total: -57.17 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -1.06 Total: -53.03 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.67 Total: 46.80 kcal Total: -75.92 6.02 -69.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842311331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.673 kcal (2) G-P(sol) polarization free energy of solvation -75.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds