Wall clock time and date at job start Tue Mar 31 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.46921 * 2 1 4 4 H 1.08996 * 109.47567 * 55.00081 * 3 2 1 5 5 C 1.50702 * 109.47100 * 174.99543 * 3 2 1 6 6 H 1.08004 * 120.00015 * 119.99583 * 5 3 2 7 7 C 1.37874 * 120.00112 * 300.00019 * 5 3 2 8 8 N 1.31515 * 119.99948 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00114 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47110 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47402 * 119.99909 * 9 7 5 12 12 H 1.48503 * 109.47260 * 240.00308 * 9 7 5 13 13 O 1.45200 * 109.47071 * 294.99464 * 3 2 1 14 14 C 1.34233 * 116.99800 * 90.00625 * 13 3 2 15 15 O 1.20827 * 120.00049 * 359.97438 * 14 13 3 16 16 C 1.50693 * 119.99957 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.68373 * 55.51328 * 16 14 13 18 18 C 1.53409 * 109.68177 * 294.99632 * 16 14 13 19 19 C 1.53080 * 108.29238 * 175.53291 * 18 16 14 20 20 C 1.50766 * 109.64138 * 48.20930 * 19 18 16 21 21 C 1.38570 * 118.71858 * 162.38782 * 20 19 18 22 22 C 1.38105 * 120.30695 * 179.79939 * 21 20 19 23 23 C 1.38296 * 119.97860 * 359.95146 * 22 21 20 24 24 C 1.37965 * 119.95831 * 0.07658 * 23 22 21 25 25 C 1.38313 * 121.45596 * 342.23753 * 20 19 18 26 26 O 1.35850 * 121.78927 * 0.36318 * 25 20 19 27 27 H 1.08996 * 109.47161 * 299.99884 * 1 2 3 28 28 H 1.09003 * 109.46935 * 60.00419 * 1 2 3 29 29 H 1.09004 * 109.46991 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47313 * 239.99349 * 2 1 3 31 31 H 1.09006 * 109.46612 * 119.99971 * 2 1 3 32 32 H 0.97001 * 119.99879 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.70455 * 55.83477 * 18 16 14 34 34 H 1.08994 * 109.70180 * 295.23038 * 18 16 14 35 35 H 1.09002 * 109.43851 * 168.25341 * 19 18 16 36 36 H 1.08999 * 109.43751 * 288.17181 * 19 18 16 37 37 H 1.07999 * 119.85345 * 359.75998 * 21 20 19 38 38 H 1.07997 * 120.01176 * 179.97438 * 22 21 20 39 39 H 1.08003 * 120.01568 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.89067 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3366 2.1729 9 14 6.0049 0.8801 1.3814 10 1 6.5988 1.5442 0.1934 11 1 6.3999 1.6158 2.6094 12 1 6.4962 -0.5189 1.4629 13 8 1.6559 2.0915 -1.2408 14 6 0.4728 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2656 16 6 0.0070 3.4215 -2.5088 17 1 0.0030 2.7169 -3.3405 18 6 0.9451 4.5925 -2.8284 19 6 0.5111 5.2056 -4.1622 20 6 -0.9793 5.4331 -4.1543 21 6 -1.5254 6.3006 -5.0867 22 6 -2.8870 6.5299 -5.1116 23 6 -3.7120 5.8913 -4.2037 24 6 -3.1736 5.0270 -3.2728 25 6 -1.8020 4.7949 -3.2439 26 8 -1.3089 3.9401 -2.3102 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.8291 -0.0611 2.9499 33 1 1.9705 4.2312 -2.9065 34 1 0.8783 5.3424 -2.0403 35 1 1.0225 6.1572 -4.3075 36 1 0.7701 4.5269 -4.9748 37 1 -0.8832 6.8003 -5.7968 38 1 -3.3075 7.2073 -5.8400 39 1 -4.7770 6.0699 -4.2229 40 1 -3.8189 4.5287 -2.5646 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842342490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:16 Heat of formation + Delta-G solvation = -110.334665 kcal Electronic energy + Delta-G solvation = -23172.362227 eV Core-core repulsion = 19724.014613 eV Total energy + Delta-G solvation = -3448.347614 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94649 -39.50664 -37.53475 -35.72531 -34.47497 -33.53086 -31.49712 -30.86193 -30.28977 -27.54247 -26.43040 -23.89999 -23.27577 -22.58359 -21.44004 -20.06893 -19.48476 -17.99389 -17.31451 -16.75802 -16.43620 -15.88889 -15.39419 -15.10775 -14.79555 -14.47730 -14.34706 -14.05217 -13.55534 -13.27585 -13.13286 -12.87440 -12.58136 -12.15514 -11.97250 -11.60843 -11.50927 -11.44868 -11.24355 -11.16688 -11.02203 -10.98409 -10.68374 -10.53555 -10.31335 -9.81884 -9.58519 -9.39263 -8.91601 -8.85531 -8.50054 -8.24265 -6.22596 -4.30171 1.18459 1.31522 2.65222 2.84083 3.20945 3.28380 3.33143 3.60245 3.92562 4.28917 4.47462 4.61184 4.65848 4.86487 4.95147 5.00432 5.09496 5.18549 5.29435 5.41678 5.44605 5.62512 5.71121 5.86275 5.88164 6.01916 6.17952 6.20990 6.27514 6.33894 6.39277 6.42598 6.66299 6.82498 6.92666 7.12856 7.18604 7.37649 7.57138 7.68721 7.88899 8.09887 8.55455 8.82182 9.35134 10.84203 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029878 B = 0.003708 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.928885 B = 7549.569528 C = 8242.063816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.886 5.886 9 Si 0.912 3.088 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.349 6.349 14 C 0.459 3.541 15 O -0.492 6.492 16 C 0.100 3.900 17 H 0.105 0.895 18 C -0.149 4.149 19 C -0.076 4.076 20 C -0.162 4.162 21 C -0.085 4.085 22 C -0.157 4.157 23 C -0.089 4.089 24 C -0.146 4.146 25 C 0.139 3.861 26 O -0.292 6.292 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.110 0.890 32 H 0.266 0.734 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.738 9.391 -14.140 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.266 6.266 14 C 0.300 3.700 15 O -0.380 6.380 16 C 0.043 3.957 17 H 0.122 0.878 18 C -0.187 4.187 19 C -0.113 4.113 20 C -0.163 4.163 21 C -0.103 4.103 22 C -0.175 4.175 23 C -0.107 4.107 24 C -0.165 4.165 25 C 0.093 3.907 26 O -0.205 6.205 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.128 0.872 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.968 9.185 -13.442 18.587 hybrid contribution 0.926 -0.082 0.165 0.944 sum -8.042 9.103 -13.277 17.995 Atomic orbital electron populations 1.21871 0.98290 0.99151 1.00808 1.22039 0.92689 0.99223 1.03500 1.20771 0.95123 0.88768 0.78283 0.93363 1.21056 0.89438 1.39137 1.06339 0.91184 1.24892 0.99312 0.94712 0.95035 1.69898 1.35359 1.37700 1.09459 0.86217 0.83755 0.77918 0.78239 1.19461 1.20732 1.20687 1.86445 1.33155 1.62360 1.44667 1.22398 0.81622 0.77654 0.88330 1.90651 1.55069 1.57171 1.35081 1.21736 0.82120 0.96058 0.95798 0.87764 1.22203 1.00796 0.97193 0.98462 1.20521 0.90945 1.02220 0.97570 1.19913 0.95999 1.01305 0.99117 1.20898 0.95225 0.96855 0.97305 1.21000 0.93641 1.02152 1.00692 1.20910 0.99798 0.95630 0.94410 1.20633 0.92041 1.02241 1.01589 1.18756 0.92409 0.90481 0.89031 1.86037 1.30828 1.58690 1.44963 0.92749 0.95012 0.94663 0.93847 0.87184 0.92361 0.87714 0.89788 0.89444 0.89918 0.85825 0.86008 0.85485 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.57 37.16 0.32 -2.87 16 2 C -0.14 -3.36 5.49 -26.73 -0.15 -3.51 16 3 C 0.22 5.83 2.25 -27.89 -0.06 5.76 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.27 8.90 -34.44 -0.31 -14.57 16 6 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.72 11.29 55.43 0.63 -24.09 16 9 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 O -0.35 -8.05 9.80 -39.27 -0.38 -8.44 16 14 C 0.46 9.68 5.76 36.00 0.21 9.89 16 15 O -0.49 -11.86 13.66 -25.44 -0.35 -12.21 16 16 C 0.10 1.63 3.32 -27.67 -0.09 1.54 16 17 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 18 C -0.15 -2.00 5.47 -26.48 -0.14 -2.15 16 19 C -0.08 -0.80 5.86 -27.81 -0.16 -0.97 16 20 C -0.16 -1.97 5.75 -104.44 -0.60 -2.57 16 21 C -0.08 -0.85 9.67 -39.51 -0.38 -1.23 16 22 C -0.16 -1.47 10.05 -39.61 -0.40 -1.87 16 23 C -0.09 -0.90 10.04 -39.66 -0.40 -1.30 16 24 C -0.15 -1.83 9.94 -39.35 -0.39 -2.22 16 25 C 0.14 1.98 6.47 -39.22 -0.25 1.73 16 26 O -0.29 -4.98 9.46 -39.09 -0.37 -5.35 16 27 H 0.05 1.27 7.80 -51.93 -0.40 0.86 16 28 H 0.03 0.68 6.06 -51.93 -0.31 0.36 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 330.19 15.07 4.98 4.98 Total: -1.00 -30.71 330.19 -9.02 -39.73 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.60 Total: 2.48 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.91 Total: -12.74 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.63 Total: -24.09 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -1.10 Total: -26.00 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.71 -9.02 -39.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842342490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.601 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds