Wall clock time and date at job start Tue Mar 31 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.46921 * 2 1 4 4 H 1.08996 * 109.47567 * 55.00081 * 3 2 1 5 5 C 1.50702 * 109.47100 * 174.99543 * 3 2 1 6 6 H 1.08004 * 120.00015 * 119.99583 * 5 3 2 7 7 C 1.37874 * 120.00112 * 300.00019 * 5 3 2 8 8 N 1.31515 * 119.99948 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00114 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47110 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47402 * 119.99909 * 9 7 5 12 12 H 1.48503 * 109.47260 * 240.00308 * 9 7 5 13 13 O 1.45200 * 109.47071 * 294.99464 * 3 2 1 14 14 C 1.34233 * 116.99800 * 90.00625 * 13 3 2 15 15 O 1.20827 * 120.00049 * 359.97438 * 14 13 3 16 16 C 1.50693 * 119.99957 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.68373 * 55.51328 * 16 14 13 18 18 C 1.53409 * 109.68177 * 294.99632 * 16 14 13 19 19 C 1.53080 * 108.29238 * 175.53291 * 18 16 14 20 20 C 1.50766 * 109.64138 * 48.20930 * 19 18 16 21 21 C 1.38570 * 118.71858 * 162.38782 * 20 19 18 22 22 C 1.38105 * 120.30695 * 179.79939 * 21 20 19 23 23 C 1.38296 * 119.97860 * 359.95146 * 22 21 20 24 24 C 1.37965 * 119.95831 * 0.07658 * 23 22 21 25 25 C 1.38313 * 121.45596 * 342.23753 * 20 19 18 26 26 O 1.35850 * 121.78927 * 0.36318 * 25 20 19 27 27 H 1.08996 * 109.47161 * 299.99884 * 1 2 3 28 28 H 1.09003 * 109.46935 * 60.00419 * 1 2 3 29 29 H 1.09004 * 109.46991 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47313 * 239.99349 * 2 1 3 31 31 H 1.09006 * 109.46612 * 119.99971 * 2 1 3 32 32 H 0.97001 * 119.99879 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.70455 * 55.83477 * 18 16 14 34 34 H 1.08994 * 109.70180 * 295.23038 * 18 16 14 35 35 H 1.09002 * 109.43851 * 168.25341 * 19 18 16 36 36 H 1.08999 * 109.43751 * 288.17181 * 19 18 16 37 37 H 1.07999 * 119.85345 * 359.75998 * 21 20 19 38 38 H 1.07997 * 120.01176 * 179.97438 * 22 21 20 39 39 H 1.08003 * 120.01568 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.89067 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3366 2.1729 9 14 6.0049 0.8801 1.3814 10 1 6.5988 1.5442 0.1934 11 1 6.3999 1.6158 2.6094 12 1 6.4962 -0.5189 1.4629 13 8 1.6559 2.0915 -1.2408 14 6 0.4728 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2656 16 6 0.0070 3.4215 -2.5088 17 1 0.0030 2.7169 -3.3405 18 6 0.9451 4.5925 -2.8284 19 6 0.5111 5.2056 -4.1622 20 6 -0.9793 5.4331 -4.1543 21 6 -1.5254 6.3006 -5.0867 22 6 -2.8870 6.5299 -5.1116 23 6 -3.7120 5.8913 -4.2037 24 6 -3.1736 5.0270 -3.2728 25 6 -1.8020 4.7949 -3.2439 26 8 -1.3089 3.9401 -2.3102 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.8291 -0.0611 2.9499 33 1 1.9705 4.2312 -2.9065 34 1 0.8783 5.3424 -2.0403 35 1 1.0225 6.1572 -4.3075 36 1 0.7701 4.5269 -4.9748 37 1 -0.8832 6.8003 -5.7968 38 1 -3.3075 7.2073 -5.8400 39 1 -4.7770 6.0699 -4.2229 40 1 -3.8189 4.5287 -2.5646 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842342490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:16 Heat of formation + Delta-G solvation = -126.025973 kcal Electronic energy + Delta-G solvation = -23173.042653 eV Core-core repulsion = 19724.014613 eV Total energy + Delta-G solvation = -3449.028040 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.15497 -41.07323 -38.60571 -37.54439 -35.71605 -35.26859 -33.42355 -31.97991 -31.14992 -29.43884 -27.70242 -25.26482 -24.84956 -23.44844 -23.05283 -21.61502 -20.91989 -19.21569 -19.02920 -18.24544 -17.80869 -17.58838 -16.89448 -16.55898 -16.12215 -15.75481 -15.31820 -15.05221 -14.88532 -14.73526 -14.64479 -14.18341 -13.87340 -13.57740 -13.43820 -13.35109 -13.14497 -12.86337 -12.85513 -12.58652 -12.44777 -12.26177 -12.13235 -12.03568 -11.79305 -11.53891 -11.47941 -11.15814 -10.86629 -10.55546 -9.72662 -9.17183 -8.28791 -6.46069 0.36916 0.44710 1.15384 1.25634 1.43111 1.44404 1.58173 2.34381 2.57376 2.83218 3.01311 3.39928 3.61522 3.72225 3.78541 3.83771 4.15215 4.22806 4.31625 4.32516 4.34721 4.47060 4.51901 4.61019 4.62699 4.77906 4.88128 4.93984 4.98722 5.03268 5.13611 5.15964 5.29641 5.34992 5.49163 5.52174 5.59896 5.62458 5.85511 5.91521 6.05123 6.36407 6.58497 6.87507 7.24886 8.78422 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029878 B = 0.003708 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.928885 B = 7549.569528 C = 8242.063816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.005 0.995 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.983 3.017 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.272 1.272 13 O -0.350 6.350 14 C 0.455 3.545 15 O -0.530 6.530 16 C 0.108 3.892 17 H 0.128 0.872 18 C -0.145 4.145 19 C -0.068 4.068 20 C -0.170 4.170 21 C -0.084 4.084 22 C -0.149 4.149 23 C -0.089 4.089 24 C -0.166 4.166 25 C 0.099 3.901 26 O -0.323 6.323 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.271 0.729 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.238 10.681 -17.019 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.023 0.977 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.197 1.197 13 O -0.266 6.266 14 C 0.297 3.703 15 O -0.419 6.419 16 C 0.051 3.949 17 H 0.145 0.855 18 C -0.183 4.183 19 C -0.104 4.104 20 C -0.171 4.171 21 C -0.102 4.102 22 C -0.167 4.167 23 C -0.107 4.107 24 C -0.185 4.185 25 C 0.055 3.945 26 O -0.238 6.238 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.171 0.829 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.486 10.490 -16.349 21.198 hybrid contribution 0.629 -0.399 1.034 1.274 sum -7.857 10.091 -15.315 19.953 Atomic orbital electron populations 1.21728 0.96574 1.00693 0.99863 1.21893 0.94165 0.98058 1.02716 1.20482 0.94852 0.89223 0.78194 0.97673 1.21342 0.90048 1.40035 1.07049 0.91084 1.25835 1.04358 0.93838 0.94325 1.70026 1.37480 1.37909 1.09907 0.85126 0.77491 0.78304 0.78436 1.18459 1.20338 1.19744 1.86427 1.34517 1.62718 1.42975 1.23462 0.80337 0.76685 0.89767 1.90627 1.55811 1.58437 1.37058 1.21753 0.83023 0.97242 0.92920 0.85504 1.22215 1.00311 0.95744 0.99987 1.20574 0.90267 1.03662 0.95931 1.20156 0.96530 1.01411 0.99020 1.21290 0.96074 0.95901 0.96940 1.21463 0.93460 1.01437 1.00354 1.21261 1.01391 0.94518 0.93482 1.20827 0.91647 1.03429 1.02612 1.19135 0.93456 0.91728 0.90219 1.85970 1.30899 1.60046 1.46925 0.94819 0.94809 0.91728 0.93039 0.89304 0.92012 0.87276 0.91378 0.86881 0.87860 0.82694 0.82700 0.82856 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.97 8.57 71.98 0.62 -5.35 16 2 C -0.13 -6.62 5.49 30.59 0.17 -6.45 16 3 C 0.23 12.31 2.25 29.85 0.07 12.38 16 4 H 0.01 0.34 7.16 -2.39 -0.02 0.32 16 5 C -0.55 -30.63 8.90 25.60 0.23 -30.40 16 6 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.92 -52.30 11.29 21.45 0.24 -52.06 16 9 Si 0.98 42.34 29.54 68.60 2.03 44.36 16 10 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 13 O -0.35 -16.68 9.80 -51.45 -0.50 -17.18 16 14 C 0.45 19.99 5.76 71.23 0.41 20.40 16 15 O -0.53 -27.13 13.66 28.36 0.39 -26.75 16 16 C 0.11 3.56 3.32 29.98 0.10 3.66 16 17 H 0.13 3.54 8.14 -2.39 -0.02 3.52 16 18 C -0.14 -3.83 5.47 30.76 0.17 -3.66 16 19 C -0.07 -1.26 5.86 29.90 0.18 -1.09 16 20 C -0.17 -3.77 5.75 -19.75 -0.11 -3.89 16 21 C -0.08 -1.37 9.67 22.32 0.22 -1.16 16 22 C -0.15 -2.23 10.05 22.25 0.22 -2.01 16 23 C -0.09 -1.58 10.04 22.22 0.22 -1.36 16 24 C -0.17 -4.15 9.94 22.42 0.22 -3.93 16 25 C 0.10 2.81 6.47 22.50 0.15 2.96 16 26 O -0.32 -11.47 9.46 -72.91 -0.69 -12.16 16 27 H 0.03 1.63 7.80 -2.39 -0.02 1.61 16 28 H 0.03 1.48 6.06 -2.39 -0.01 1.47 16 29 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.09 4.91 5.95 -2.38 -0.01 4.90 16 32 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 40 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -70.11 330.19 5.79 -64.32 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 1.03 Total: 18.02 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 3.30 Total: -18.55 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.24 Total: -52.06 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -0.81 Total: -56.09 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -70.11 5.79 -64.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842342490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.707 kcal (2) G-P(sol) polarization free energy of solvation -70.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds