Wall clock time and date at job start Tue Mar 31 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47009 * 2 1 4 4 H 1.08998 * 109.47339 * 305.00261 * 3 2 1 5 5 C 1.50694 * 109.47174 * 184.99971 * 3 2 1 6 6 H 1.08000 * 120.00563 * 240.00081 * 5 3 2 7 7 C 1.37885 * 119.99902 * 59.99918 * 5 3 2 8 8 N 1.31516 * 119.99913 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99854 * 179.72538 * 7 5 3 10 10 H 1.48498 * 109.46909 * 90.00086 * 9 7 5 11 11 H 1.48497 * 109.46701 * 209.99996 * 9 7 5 12 12 H 1.48500 * 109.46867 * 330.00101 * 9 7 5 13 13 O 1.45198 * 109.46967 * 65.00042 * 3 2 1 14 14 C 1.34231 * 117.00230 * 269.99811 * 13 3 2 15 15 O 1.20830 * 119.99768 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00448 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.68183 * 304.48154 * 16 14 13 18 18 C 1.53413 * 109.68421 * 64.99719 * 16 14 13 19 19 C 1.53066 * 108.30997 * 184.43171 * 18 16 14 20 20 C 1.50773 * 109.68494 * 311.83538 * 19 18 16 21 21 C 1.38510 * 118.76052 * 197.77022 * 20 19 18 22 22 C 1.38109 * 120.31248 * 180.18413 * 21 20 19 23 23 C 1.38284 * 119.98624 * 0.02562 * 22 21 20 24 24 C 1.37968 * 119.95735 * 359.91922 * 23 22 21 25 25 C 1.38367 * 121.41103 * 17.82118 * 20 19 18 26 26 O 1.35851 * 121.80299 * 359.43890 * 25 20 19 27 27 H 1.08999 * 109.47267 * 60.00088 * 1 2 3 28 28 H 1.09002 * 109.46877 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47279 * 299.99973 * 1 2 3 30 30 H 1.09001 * 109.47279 * 240.00027 * 2 1 3 31 31 H 1.08999 * 109.47267 * 119.99912 * 2 1 3 32 32 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.69993 * 304.13758 * 18 16 14 34 34 H 1.09004 * 109.69414 * 64.72856 * 18 16 14 35 35 H 1.09001 * 109.43294 * 71.89504 * 19 18 16 36 36 H 1.08997 * 109.44072 * 191.76520 * 19 18 16 37 37 H 1.08000 * 119.84331 * 0.18718 * 21 20 19 38 38 H 1.08002 * 120.00618 * 179.97438 * 22 21 20 39 39 H 1.08003 * 120.02135 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.89754 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0046 0.8875 -1.3852 10 1 6.5599 -0.3408 -0.7622 11 1 6.3798 0.9272 -2.8214 12 1 6.5536 2.0834 -0.6968 13 8 1.6558 2.0916 1.2407 14 6 0.4727 2.7254 1.2560 15 8 -0.2193 2.7370 0.2656 16 6 0.0073 3.4225 2.5084 17 1 0.0036 2.7186 3.3406 18 6 0.9455 4.5938 2.8268 19 6 0.5117 5.2088 4.1597 20 6 -0.9788 5.4361 4.1529 21 6 -1.5243 6.3069 5.0817 22 6 -2.8861 6.5358 5.1067 23 6 -3.7116 5.8938 4.2019 24 6 -3.1736 5.0262 3.2738 25 6 -1.8019 4.7948 3.2443 26 8 -1.3087 3.9409 2.3099 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0610 -2.9500 33 1 1.9709 4.2324 2.9054 34 1 0.8789 5.3428 2.0376 35 1 0.7716 4.5315 4.9732 36 1 1.0231 6.1605 4.3036 37 1 -0.8818 6.8093 5.7896 38 1 -3.3062 7.2155 5.8333 39 1 -4.7766 6.0721 4.2212 40 1 -3.8192 4.5256 2.5673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842342497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:21 Heat of formation + Delta-G solvation = -110.348062 kcal Electronic energy + Delta-G solvation = -23172.110781 eV Core-core repulsion = 19723.762586 eV Total energy + Delta-G solvation = -3448.348195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.94473 -39.50610 -37.53601 -35.72446 -34.47507 -33.52971 -31.49665 -30.86152 -30.29045 -27.54206 -26.43046 -23.89933 -23.27368 -22.58200 -21.44017 -20.06991 -19.48438 -17.99406 -17.31404 -16.75641 -16.43499 -15.88673 -15.39339 -15.10752 -14.79489 -14.47842 -14.34976 -14.05184 -13.55494 -13.27625 -13.13297 -12.87117 -12.58151 -12.15425 -11.97222 -11.60897 -11.50595 -11.44604 -11.24447 -11.16716 -11.02676 -10.98100 -10.67784 -10.53337 -10.32286 -9.82271 -9.58549 -9.38797 -8.91734 -8.86526 -8.49530 -8.24184 -6.22375 -4.30046 1.18549 1.31460 2.65321 2.84058 3.22070 3.28182 3.32042 3.60298 3.92526 4.28965 4.47400 4.61091 4.65883 4.86523 4.95146 5.00442 5.09564 5.18566 5.29416 5.41697 5.44665 5.62540 5.71188 5.86267 5.88186 6.01954 6.17954 6.20979 6.27579 6.33941 6.39311 6.42680 6.66331 6.82569 6.92716 7.12890 7.18627 7.37600 7.57052 7.68823 7.88917 8.09996 8.55465 8.81990 9.35147 10.84361 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029852 B = 0.003709 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.748736 B = 7548.174952 C = 8241.460544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.350 6.350 14 C 0.460 3.540 15 O -0.492 6.492 16 C 0.100 3.900 17 H 0.105 0.895 18 C -0.149 4.149 19 C -0.076 4.076 20 C -0.162 4.162 21 C -0.085 4.085 22 C -0.157 4.157 23 C -0.089 4.089 24 C -0.146 4.146 25 C 0.138 3.862 26 O -0.291 6.291 27 H 0.053 0.947 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.110 0.890 31 H 0.043 0.957 32 H 0.267 0.733 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.733 9.388 14.122 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.561 4.561 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.266 6.266 14 C 0.300 3.700 15 O -0.380 6.380 16 C 0.043 3.957 17 H 0.122 0.878 18 C -0.186 4.186 19 C -0.113 4.113 20 C -0.163 4.163 21 C -0.103 4.103 22 C -0.175 4.175 23 C -0.107 4.107 24 C -0.165 4.165 25 C 0.093 3.907 26 O -0.205 6.205 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.128 0.872 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.964 9.191 13.414 18.568 hybrid contribution 0.930 -0.086 -0.148 0.946 sum -8.033 9.104 13.267 17.984 Atomic orbital electron populations 1.21871 0.98291 0.99148 1.00810 1.22041 0.92689 0.99230 1.03496 1.20766 0.95097 0.88761 0.78280 0.93363 1.21016 0.89437 1.39235 1.06365 0.91238 1.24894 0.99305 0.94723 0.95004 1.69890 1.35436 1.37632 1.09459 0.86266 0.83748 0.78690 0.77390 1.20324 1.20951 1.19609 1.86443 1.33149 1.62365 1.44674 1.22398 0.81621 0.77656 0.88327 1.90652 1.55068 1.57186 1.35068 1.21736 0.82124 0.96051 0.95806 0.87769 1.22201 1.00790 0.97185 0.98470 1.20517 0.90948 1.02219 0.97577 1.19912 0.95989 1.01220 0.99183 1.20883 0.95231 0.96843 0.97326 1.20998 0.93635 1.02136 1.00713 1.20908 0.99799 0.95599 0.94443 1.20635 0.92047 1.02216 1.01612 1.18773 0.92410 0.90474 0.89044 1.86040 1.30822 1.58781 1.44861 0.92742 0.94665 0.95019 0.87188 0.93851 0.92303 0.87715 0.89788 0.89924 0.89450 0.85826 0.86008 0.85485 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.56 37.16 0.32 -2.87 16 2 C -0.14 -3.37 5.49 -26.73 -0.15 -3.51 16 3 C 0.22 5.84 2.25 -27.89 -0.06 5.78 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.29 8.90 -34.44 -0.31 -14.60 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.73 11.29 55.43 0.63 -24.11 16 9 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 O -0.35 -8.06 9.80 -39.26 -0.38 -8.44 16 14 C 0.46 9.68 5.76 36.00 0.21 9.89 16 15 O -0.49 -11.86 13.66 -25.44 -0.35 -12.21 16 16 C 0.10 1.63 3.32 -27.67 -0.09 1.54 16 17 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 18 C -0.15 -2.00 5.47 -26.48 -0.14 -2.15 16 19 C -0.08 -0.80 5.86 -27.81 -0.16 -0.97 16 20 C -0.16 -1.96 5.75 -104.44 -0.60 -2.56 16 21 C -0.08 -0.85 9.67 -39.53 -0.38 -1.23 16 22 C -0.16 -1.47 10.04 -39.61 -0.40 -1.87 16 23 C -0.09 -0.90 10.04 -39.66 -0.40 -1.30 16 24 C -0.15 -1.83 9.94 -39.35 -0.39 -2.22 16 25 C 0.14 1.98 6.47 -39.20 -0.25 1.73 16 26 O -0.29 -4.98 9.47 -39.09 -0.37 -5.35 16 27 H 0.05 1.27 7.80 -51.93 -0.40 0.86 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.03 0.68 6.06 -51.93 -0.31 0.36 16 30 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 31 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 40 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 LS Contribution 330.20 15.07 4.98 4.98 Total: -1.00 -30.69 330.20 -9.02 -39.72 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.60 Total: 2.51 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.91 Total: -12.75 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.63 Total: -24.11 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -1.10 Total: -26.00 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.69 -9.02 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842342497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.630 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds