Wall clock time and date at job start Tue Mar 31 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 O 1.45196 * 109.47118 * 239.99498 * 2 1 3 13 13 C 1.34748 * 117.00053 * 90.00567 * 12 2 1 14 14 O 1.21506 * 119.99475 * 359.97438 * 13 12 2 15 15 C 1.47466 * 120.00059 * 179.97438 * 13 12 2 16 16 C 1.39814 * 120.27503 * 0.02562 * 15 13 12 17 17 C 1.37440 * 120.20101 * 179.82293 * 16 15 13 18 18 C 1.39614 * 120.43441 * 0.11098 * 17 16 15 19 19 C 1.39195 * 119.11158 * 0.14091 * 18 17 16 20 20 C 1.37285 * 120.93987 * 359.37299 * 19 18 17 21 21 C 1.51680 * 106.99405 * 179.44698 * 19 18 17 22 22 C 1.54696 * 101.88856 * 344.47337 * 21 19 18 23 23 C 1.53001 * 110.74589 * 267.04655 * 22 21 19 24 24 C 1.53002 * 110.89695 * 143.78798 * 22 21 19 25 25 O 1.35983 * 129.71063 * 180.57951 * 18 17 16 26 26 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 28 28 H 1.09002 * 109.47051 * 59.99923 * 1 2 3 29 29 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 30 30 H 1.08007 * 119.89754 * 359.83695 * 16 15 13 31 31 H 1.07995 * 119.78421 * 180.08541 * 17 16 15 32 32 H 1.08006 * 120.07157 * 180.56750 * 20 19 18 33 33 H 1.09005 * 110.94013 * 226.32897 * 21 19 18 34 34 H 1.08995 * 110.94918 * 102.62549 * 21 19 18 35 35 H 1.08993 * 109.47690 * 174.86016 * 23 22 21 36 36 H 1.09013 * 109.46944 * 294.86224 * 23 22 21 37 37 H 1.08999 * 109.47005 * 54.85451 * 23 22 21 38 38 H 1.08997 * 109.47254 * 305.05235 * 24 22 21 39 39 H 1.09001 * 109.47401 * 65.05249 * 24 22 21 40 40 H 1.09000 * 109.46959 * 185.05222 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 0.9526 0.8368 2.6033 8 14 2.3270 -1.1160 4.0081 9 1 3.8119 -1.1214 4.0046 10 1 1.8378 -0.4118 5.2205 11 1 1.8268 -2.5143 4.0117 12 8 2.0140 -0.6846 -1.1855 13 6 2.2180 0.0667 -2.2853 14 8 1.9970 1.2611 -2.2546 15 6 2.7094 -0.5607 -3.5261 16 6 2.9650 -1.9346 -3.5679 17 6 3.4195 -2.5184 -4.7261 18 6 3.6327 -1.7472 -5.8703 19 6 3.3816 -0.3790 -5.8213 20 6 2.9180 0.2128 -4.6726 21 6 3.7140 0.1821 -7.1907 22 6 4.5383 -0.9685 -7.8150 23 6 6.0339 -0.7589 -7.5696 24 6 4.2497 -1.0967 -9.3121 25 8 4.0627 -2.1238 -7.1042 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7218 1.1708 3.4843 30 1 2.8046 -2.5391 -2.6873 31 1 3.6135 -3.5804 -4.7513 32 1 2.7191 1.2742 -4.6529 33 1 4.3130 1.0888 -7.1053 34 1 2.8073 0.3686 -7.7661 35 1 6.5870 -1.6235 -7.9364 36 1 6.3666 0.1356 -8.0964 37 1 6.2135 -0.6392 -6.5012 38 1 3.1771 -1.2141 -9.4667 39 1 4.5949 -0.2000 -9.8268 40 1 4.7715 -1.9673 -9.7095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842716244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:30 Heat of formation + Delta-G solvation = -103.885766 kcal Electronic energy + Delta-G solvation = -22575.928242 eV Core-core repulsion = 19127.860273 eV Total energy + Delta-G solvation = -3448.067969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53252 -39.50643 -37.44607 -35.59346 -34.11414 -33.25300 -31.79740 -30.45404 -29.41537 -27.84117 -26.83779 -25.30913 -24.05712 -21.91777 -21.42542 -20.93418 -19.64501 -17.42655 -17.31028 -16.68461 -16.03695 -15.80409 -15.62487 -14.91707 -14.68866 -14.37567 -14.17509 -13.95071 -13.45535 -13.10094 -13.05280 -12.83795 -12.60487 -12.38155 -12.35257 -12.22035 -11.99257 -11.79477 -11.33972 -11.24675 -11.04599 -10.92632 -10.84002 -10.72777 -10.37742 -10.27373 -9.71540 -9.52394 -8.98293 -8.90254 -8.48285 -8.23102 -6.17271 -4.24225 0.88662 1.29759 2.86647 3.08533 3.27392 3.30602 3.32832 3.62164 3.93048 4.14021 4.25154 4.36585 4.45126 4.67999 4.76197 5.00096 5.14497 5.15724 5.20538 5.27402 5.32225 5.37185 5.41652 5.48199 5.58926 5.68085 5.70156 5.82964 6.00245 6.21933 6.26234 6.45637 6.49672 6.66598 6.91322 6.92989 7.04509 7.17281 7.60380 7.73830 7.93954 8.14786 8.63972 8.88902 9.41042 10.90294 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035811 B = 0.003117 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.704345 B = 8979.448940 C = 9298.322819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.351 6.351 13 C 0.500 3.500 14 O -0.521 6.521 15 C -0.142 4.142 16 C -0.025 4.025 17 C -0.153 4.153 18 C 0.132 3.868 19 C -0.192 4.192 20 C -0.010 4.010 21 C -0.097 4.097 22 C 0.100 3.900 23 C -0.164 4.164 24 C -0.141 4.141 25 O -0.295 6.295 26 H 0.037 0.963 27 H 0.099 0.901 28 H 0.016 0.984 29 H 0.267 0.733 30 H 0.151 0.849 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.946 -3.915 -21.380 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.267 6.267 13 C 0.345 3.655 14 O -0.412 6.412 15 C -0.144 4.144 16 C -0.043 4.043 17 C -0.172 4.172 18 C 0.086 3.914 19 C -0.193 4.193 20 C -0.028 4.028 21 C -0.134 4.134 22 C 0.062 3.938 23 C -0.221 4.221 24 C -0.198 4.198 25 O -0.209 6.209 26 H 0.056 0.944 27 H 0.117 0.883 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.169 0.831 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.793 -3.662 -21.282 22.638 hybrid contribution 0.180 -0.121 0.923 0.949 sum 6.972 -3.783 -20.359 21.849 Atomic orbital electron populations 1.22163 0.97527 1.00159 1.01408 1.20650 0.91402 0.93969 0.77581 0.93493 1.20986 1.32647 1.13436 0.88868 0.91309 1.24886 0.94950 0.95083 0.99057 1.69895 1.36249 1.22284 1.24290 0.86323 0.79220 0.79528 0.80998 1.19983 1.21048 1.19918 1.86531 1.75890 1.43206 1.21112 1.20812 0.74930 0.85199 0.84552 1.90765 1.49310 1.16295 1.84861 1.19225 1.08044 0.94220 0.92880 1.21313 0.91852 0.93762 0.97406 1.20227 1.06817 1.00482 0.89639 1.19838 0.92976 0.92885 0.85680 1.20553 1.08082 0.94495 0.96147 1.20334 0.92849 1.00388 0.89261 1.21859 1.00737 0.98704 0.92132 1.22784 0.94497 0.83208 0.93288 1.22209 0.93747 1.02878 1.03266 1.21837 1.03095 1.03248 0.91613 1.86829 1.76690 1.34248 1.23161 0.94370 0.88271 0.96469 0.92339 0.83116 0.84783 0.84413 0.88861 0.88994 0.91267 0.90580 0.91572 0.91349 0.90244 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.33 37.16 0.35 -3.64 16 2 C 0.22 5.89 2.56 -27.88 -0.07 5.82 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.72 8.89 -34.44 -0.31 -15.02 16 5 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.43 11.34 55.43 0.63 -24.80 16 8 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 O -0.35 -8.51 9.12 -40.62 -0.37 -8.88 16 13 C 0.50 11.03 7.87 34.49 0.27 11.30 16 14 O -0.52 -12.73 15.62 -19.27 -0.30 -13.03 16 15 C -0.14 -2.48 5.88 -104.94 -0.62 -3.10 16 16 C -0.03 -0.38 9.59 -39.28 -0.38 -0.76 16 17 C -0.15 -2.00 10.05 -39.36 -0.40 -2.40 16 18 C 0.13 1.74 6.95 -38.71 -0.27 1.47 16 19 C -0.19 -2.48 6.25 -104.13 -0.65 -3.13 16 20 C -0.01 -0.15 9.58 -39.32 -0.38 -0.53 16 21 C -0.10 -0.91 6.19 -26.51 -0.16 -1.08 16 22 C 0.10 0.89 1.26 -89.73 -0.11 0.77 16 23 C -0.16 -1.26 8.84 37.16 0.33 -0.93 16 24 C -0.14 -0.89 8.96 37.16 0.33 -0.56 16 25 O -0.30 -3.55 10.51 -19.69 -0.21 -3.75 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.10 2.71 6.09 -51.93 -0.32 2.39 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.15 2.20 7.61 -52.48 -0.40 1.80 16 31 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.14 2.04 7.66 -52.48 -0.40 1.63 16 33 H 0.09 0.74 7.92 -51.93 -0.41 0.32 16 34 H 0.09 0.76 7.91 -51.93 -0.41 0.35 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 38 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -31.60 338.58 -7.98 -39.58 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.66 Total: -0.20 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.16 Total: -10.15 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.63 Total: -24.80 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.88 Total: -25.66 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.60 -7.98 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842716244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.306 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds