Wall clock time and date at job start Tue Mar 31 2020 06:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 O 1.45196 * 109.47118 * 239.99498 * 2 1 3 13 13 C 1.34748 * 117.00053 * 90.00567 * 12 2 1 14 14 O 1.21506 * 119.99475 * 359.97438 * 13 12 2 15 15 C 1.47466 * 120.00059 * 179.97438 * 13 12 2 16 16 C 1.39814 * 120.27503 * 0.02562 * 15 13 12 17 17 C 1.37440 * 120.20101 * 179.82293 * 16 15 13 18 18 C 1.39614 * 120.43441 * 0.11098 * 17 16 15 19 19 C 1.39195 * 119.11158 * 0.14091 * 18 17 16 20 20 C 1.37285 * 120.93987 * 359.37299 * 19 18 17 21 21 C 1.51680 * 106.99405 * 179.44698 * 19 18 17 22 22 C 1.54696 * 101.88856 * 344.47337 * 21 19 18 23 23 C 1.53001 * 110.74589 * 267.04655 * 22 21 19 24 24 C 1.53002 * 110.89695 * 143.78798 * 22 21 19 25 25 O 1.35983 * 129.71063 * 180.57951 * 18 17 16 26 26 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 28 28 H 1.09002 * 109.47051 * 59.99923 * 1 2 3 29 29 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 30 30 H 1.08007 * 119.89754 * 359.83695 * 16 15 13 31 31 H 1.07995 * 119.78421 * 180.08541 * 17 16 15 32 32 H 1.08006 * 120.07157 * 180.56750 * 20 19 18 33 33 H 1.09005 * 110.94013 * 226.32897 * 21 19 18 34 34 H 1.08995 * 110.94918 * 102.62549 * 21 19 18 35 35 H 1.08993 * 109.47690 * 174.86016 * 23 22 21 36 36 H 1.09013 * 109.46944 * 294.86224 * 23 22 21 37 37 H 1.08999 * 109.47005 * 54.85451 * 23 22 21 38 38 H 1.08997 * 109.47254 * 305.05235 * 24 22 21 39 39 H 1.09001 * 109.47401 * 65.05249 * 24 22 21 40 40 H 1.09000 * 109.46959 * 185.05222 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 0.9526 0.8368 2.6033 8 14 2.3270 -1.1160 4.0081 9 1 3.8119 -1.1214 4.0046 10 1 1.8378 -0.4118 5.2205 11 1 1.8268 -2.5143 4.0117 12 8 2.0140 -0.6846 -1.1855 13 6 2.2180 0.0667 -2.2853 14 8 1.9970 1.2611 -2.2546 15 6 2.7094 -0.5607 -3.5261 16 6 2.9650 -1.9346 -3.5679 17 6 3.4195 -2.5184 -4.7261 18 6 3.6327 -1.7472 -5.8703 19 6 3.3816 -0.3790 -5.8213 20 6 2.9180 0.2128 -4.6726 21 6 3.7140 0.1821 -7.1907 22 6 4.5383 -0.9685 -7.8150 23 6 6.0339 -0.7589 -7.5696 24 6 4.2497 -1.0967 -9.3121 25 8 4.0627 -2.1238 -7.1042 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7218 1.1708 3.4843 30 1 2.8046 -2.5391 -2.6873 31 1 3.6135 -3.5804 -4.7513 32 1 2.7191 1.2742 -4.6529 33 1 4.3130 1.0888 -7.1053 34 1 2.8073 0.3686 -7.7661 35 1 6.5870 -1.6235 -7.9364 36 1 6.3666 0.1356 -8.0964 37 1 6.2135 -0.6392 -6.5012 38 1 3.1771 -1.2141 -9.4667 39 1 4.5949 -0.2000 -9.8268 40 1 4.7715 -1.9673 -9.7095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842716244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:29 Heat of formation + Delta-G solvation = -120.860057 kcal Electronic energy + Delta-G solvation = -22576.664302 eV Core-core repulsion = 19127.860273 eV Total energy + Delta-G solvation = -3448.804030 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.49237 -41.23980 -38.67575 -37.46955 -35.33864 -34.90947 -32.82993 -31.91609 -31.19995 -28.38099 -27.76738 -27.45433 -25.48067 -23.20168 -22.96807 -21.77975 -21.33484 -19.09339 -18.53973 -18.30083 -17.63754 -16.96715 -16.86358 -16.58336 -16.48376 -15.39426 -15.28631 -14.90347 -14.80089 -14.36179 -14.28634 -13.98538 -13.86431 -13.65356 -13.45805 -13.22547 -13.18537 -12.99984 -12.90622 -12.82049 -12.66585 -12.40411 -12.17639 -12.10765 -11.83171 -11.69556 -11.61389 -11.49619 -11.01616 -10.60469 -10.08014 -9.33734 -8.29116 -6.46357 -0.38048 0.19802 1.41845 1.46261 1.50139 1.54241 1.90347 2.10716 2.41228 2.63275 3.01630 3.32827 3.43996 3.71669 3.79945 3.82575 4.01251 4.04490 4.21539 4.40212 4.49556 4.61485 4.64901 4.72730 4.76669 4.78551 4.79994 4.85278 4.88799 4.95690 5.04113 5.12980 5.19077 5.20489 5.27391 5.29506 5.44251 5.47016 5.60295 5.88027 6.03642 6.06053 6.58205 6.90985 7.25074 8.78837 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035811 B = 0.003117 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.704345 B = 8979.448940 C = 9298.322819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.218 3.782 3 H 0.007 0.993 4 C -0.549 4.549 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.262 1.262 12 O -0.355 6.355 13 C 0.497 3.503 14 O -0.555 6.555 15 C -0.171 4.171 16 C -0.024 4.024 17 C -0.150 4.150 18 C 0.140 3.860 19 C -0.191 4.191 20 C -0.013 4.013 21 C -0.097 4.097 22 C 0.093 3.907 23 C -0.163 4.163 24 C -0.138 4.138 25 O -0.302 6.302 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.022 0.978 29 H 0.271 0.729 30 H 0.151 0.849 31 H 0.161 0.839 32 H 0.135 0.865 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.163 -5.263 -23.224 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.587 4.587 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.193 1.193 10 H -0.202 1.202 11 H -0.187 1.187 12 O -0.271 6.271 13 C 0.344 3.656 14 O -0.449 6.449 15 C -0.173 4.173 16 C -0.042 4.042 17 C -0.168 4.168 18 C 0.093 3.907 19 C -0.192 4.192 20 C -0.031 4.031 21 C -0.133 4.133 22 C 0.056 3.944 23 C -0.220 4.220 24 C -0.195 4.195 25 O -0.216 6.216 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.123 0.877 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.014 -5.018 -23.162 25.018 hybrid contribution -0.140 0.312 1.293 1.338 sum 7.875 -4.706 -21.869 23.715 Atomic orbital electron populations 1.21991 0.96694 1.00520 1.00787 1.20386 0.92081 0.92115 0.78938 0.97519 1.21269 1.33657 1.13957 0.89800 0.91205 1.25862 0.94692 0.95654 1.02197 1.70020 1.36764 1.23417 1.25349 0.85202 0.78778 0.78646 0.76596 1.19312 1.20206 1.18683 1.86515 1.76295 1.43141 1.21173 1.21649 0.73942 0.84961 0.85040 1.90729 1.51097 1.17724 1.85357 1.19029 1.11322 0.95496 0.91427 1.21304 0.91901 0.92662 0.98367 1.20413 1.05767 1.01758 0.88846 1.20042 0.91590 0.92911 0.86170 1.20856 1.06568 0.94858 0.96868 1.20316 0.93233 1.00174 0.89425 1.22042 1.01867 0.99566 0.89869 1.23162 0.94997 0.81738 0.94456 1.22244 0.92984 1.04388 1.02421 1.21889 1.03221 1.04771 0.89599 1.86848 1.76298 1.36013 1.22415 0.93350 0.89935 0.95932 0.91935 0.83153 0.82146 0.84759 0.87056 0.87508 0.90687 0.88112 0.93415 0.91509 0.87743 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.58 9.33 71.98 0.67 -6.91 16 2 C 0.22 12.41 2.56 29.85 0.08 12.49 16 3 H 0.01 0.45 7.16 -2.39 -0.02 0.43 16 4 C -0.55 -31.77 8.89 25.60 0.23 -31.55 16 5 H 0.07 3.91 7.81 -2.91 -0.02 3.89 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -53.51 11.34 21.45 0.24 -53.27 16 8 Si 0.99 43.24 29.54 68.60 2.03 45.26 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 12 O -0.35 -17.97 9.12 -56.58 -0.52 -18.49 16 13 C 0.50 23.02 7.87 70.25 0.55 23.57 16 14 O -0.56 -28.78 15.62 19.82 0.31 -28.47 16 15 C -0.17 -6.14 5.88 -20.07 -0.12 -6.26 16 16 C -0.02 -0.73 9.59 22.46 0.22 -0.51 16 17 C -0.15 -3.69 10.05 22.41 0.23 -3.46 16 18 C 0.14 3.41 6.95 22.83 0.16 3.56 16 19 C -0.19 -4.66 6.25 -19.55 -0.12 -4.78 16 20 C -0.01 -0.40 9.58 22.44 0.21 -0.19 16 21 C -0.10 -1.54 6.19 30.74 0.19 -1.35 16 22 C 0.09 1.36 1.26 -10.21 -0.01 1.35 16 23 C -0.16 -2.03 8.84 71.98 0.64 -1.39 16 24 C -0.14 -1.24 8.96 71.98 0.64 -0.59 16 25 O -0.30 -6.44 10.51 -93.36 -0.98 -7.42 16 26 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.08 4.67 6.09 -2.38 -0.01 4.65 16 28 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.15 4.44 7.61 -2.91 -0.02 4.42 16 31 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.13 4.10 7.66 -2.91 -0.02 4.07 16 33 H 0.11 1.41 7.92 -2.38 -0.02 1.39 16 34 H 0.11 1.43 7.91 -2.39 -0.02 1.42 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.05 0.78 8.12 -2.39 -0.02 0.76 16 38 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 39 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -70.43 338.58 6.13 -64.31 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.03 Total: 12.76 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 4.01 Total: -14.69 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.24 Total: -53.27 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -1.19 Total: -54.38 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -70.43 6.13 -64.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842716244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.553 kcal (2) G-P(sol) polarization free energy of solvation -70.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds