Wall clock time and date at job start Tue Mar 31 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47498 * 2 1 4 4 C 1.50710 * 109.46745 * 240.00589 * 2 1 3 5 5 H 1.07998 * 119.99774 * 240.00100 * 4 2 1 6 6 C 1.37873 * 119.99800 * 60.00026 * 4 2 1 7 7 N 1.31515 * 120.00393 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99803 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47110 * 90.00045 * 8 6 4 10 10 H 1.48498 * 109.47246 * 209.99800 * 8 6 4 11 11 H 1.48495 * 109.47073 * 329.99908 * 8 6 4 12 12 O 1.45202 * 109.47679 * 120.00874 * 2 1 3 13 13 C 1.34741 * 116.99911 * 269.99943 * 12 2 1 14 14 O 1.21513 * 119.99820 * 359.97438 * 13 12 2 15 15 C 1.47470 * 120.00093 * 180.27245 * 13 12 2 16 16 C 1.39806 * 120.27146 * 359.72235 * 15 13 12 17 17 C 1.37449 * 120.19963 * 179.80628 * 16 15 13 18 18 C 1.39604 * 120.43323 * 0.13055 * 17 16 15 19 19 C 1.39206 * 119.11194 * 0.14795 * 18 17 16 20 20 C 1.37277 * 120.94076 * 359.34514 * 19 18 17 21 21 C 1.51677 * 106.99226 * 179.44565 * 19 18 17 22 22 C 1.54706 * 101.89358 * 344.46932 * 21 19 18 23 23 C 1.52999 * 110.74424 * 267.05138 * 22 21 19 24 24 C 1.53002 * 110.89501 * 143.78479 * 22 21 19 25 25 O 1.35987 * 129.71252 * 180.57890 * 18 17 16 26 26 H 1.09005 * 109.46793 * 299.99516 * 1 2 3 27 27 H 1.08996 * 109.47470 * 59.98836 * 1 2 3 28 28 H 1.09001 * 109.47235 * 180.02562 * 1 2 3 29 29 H 0.96994 * 120.00268 * 180.02562 * 7 6 4 30 30 H 1.08001 * 119.90450 * 359.82401 * 16 15 13 31 31 H 1.07997 * 119.78157 * 180.11847 * 17 16 15 32 32 H 1.07998 * 120.07599 * 180.58910 * 20 19 18 33 33 H 1.09009 * 110.94095 * 226.32508 * 21 19 18 34 34 H 1.08994 * 110.95081 * 102.62825 * 21 19 18 35 35 H 1.09001 * 109.47004 * 174.85915 * 23 22 21 36 36 H 1.09003 * 109.46666 * 294.85687 * 23 22 21 37 37 H 1.08998 * 109.47322 * 54.85426 * 23 22 21 38 38 H 1.08997 * 109.47596 * 305.06035 * 24 22 21 39 39 H 1.09003 * 109.47005 * 65.05733 * 24 22 21 40 40 H 1.08996 * 109.46965 * 185.05251 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3211 -1.1200 -4.0082 9 1 1.3424 -2.1613 -4.4121 10 1 2.4863 -0.1410 -5.1124 11 1 3.6290 -1.7581 -3.7126 12 8 2.0141 -0.6846 1.1854 13 6 2.2181 0.0666 2.2852 14 8 1.9979 1.2612 2.2544 15 6 2.7148 -0.5599 3.5244 16 6 2.9705 -1.9338 3.5660 17 6 3.4372 -2.5155 4.7206 18 6 3.6580 -1.7431 5.8623 19 6 3.3961 -0.3767 5.8167 20 6 2.9396 0.2164 4.6659 21 6 3.7140 0.1817 7.1906 22 6 3.7792 -1.1032 8.0498 23 6 2.4200 -1.3985 8.6871 24 6 4.8647 -0.9884 9.1219 25 8 4.1201 -2.1141 7.0863 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8898 28 1 -0.3634 -1.0277 0.0005 29 1 0.7080 1.1612 -3.4842 30 1 2.8010 -2.5399 2.6883 31 1 3.6343 -3.5771 4.7446 32 1 2.7500 1.2794 4.6434 33 1 2.9185 0.8418 7.5366 34 1 4.6737 0.6984 7.1888 35 1 2.4642 -2.3532 9.2113 36 1 2.1706 -0.6071 9.3939 37 1 1.6569 -1.4455 7.9102 38 1 5.8174 -0.7475 8.6501 39 1 4.5983 -0.1998 9.8257 40 1 4.9518 -1.9358 9.6537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842716245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:32 Heat of formation + Delta-G solvation = -103.860601 kcal Electronic energy + Delta-G solvation = -22575.250023 eV Core-core repulsion = 19127.183145 eV Total energy + Delta-G solvation = -3448.066878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53195 -39.50619 -37.44642 -35.59344 -34.11498 -33.25600 -31.79799 -30.45395 -29.41370 -27.84533 -26.83817 -25.31234 -24.05704 -21.91760 -21.42629 -20.93526 -19.64566 -17.42679 -17.31042 -16.68084 -16.06198 -15.80392 -15.60452 -14.91892 -14.69646 -14.37782 -14.16761 -13.95135 -13.45949 -13.09501 -13.05204 -12.84414 -12.60702 -12.38618 -12.36665 -12.21520 -11.97627 -11.80926 -11.35852 -11.21836 -11.08343 -10.92237 -10.80068 -10.74895 -10.37164 -10.27099 -9.71595 -9.52415 -8.98277 -8.89650 -8.48661 -8.23103 -6.17433 -4.24302 0.88678 1.29764 2.86533 3.08594 3.25694 3.30869 3.34636 3.62244 3.92876 4.13902 4.25353 4.36423 4.44827 4.67832 4.76153 5.00033 5.14289 5.15587 5.20310 5.27378 5.32010 5.37126 5.41416 5.48228 5.58759 5.67994 5.70048 5.82392 6.00253 6.21918 6.26239 6.45641 6.49670 6.66354 6.91150 6.92858 7.04488 7.17226 7.60509 7.73785 7.94151 8.14731 8.64010 8.89090 9.41049 10.90104 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037912 B = 0.003100 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.370551 B = 9030.678185 C = 9366.632521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.351 6.351 13 C 0.500 3.500 14 O -0.521 6.521 15 C -0.142 4.142 16 C -0.025 4.025 17 C -0.153 4.153 18 C 0.132 3.868 19 C -0.192 4.192 20 C -0.010 4.010 21 C -0.097 4.097 22 C 0.100 3.900 23 C -0.163 4.163 24 C -0.141 4.141 25 O -0.295 6.295 26 H 0.016 0.984 27 H 0.100 0.900 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.151 0.849 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 -4.275 22.022 22.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.267 6.267 13 C 0.345 3.655 14 O -0.412 6.412 15 C -0.144 4.144 16 C -0.043 4.043 17 C -0.172 4.172 18 C 0.086 3.914 19 C -0.193 4.193 20 C -0.028 4.028 21 C -0.134 4.134 22 C 0.062 3.938 23 C -0.221 4.221 24 C -0.198 4.198 25 O -0.209 6.209 26 H 0.035 0.965 27 H 0.118 0.882 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.169 0.831 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.873 -4.007 21.894 22.785 hybrid contribution 0.117 -0.128 -0.913 0.929 sum 4.990 -4.134 20.981 21.959 Atomic orbital electron populations 1.22168 0.97524 1.00151 1.01433 1.20660 0.91402 0.93982 0.77598 0.93490 1.21027 1.32489 1.13475 0.88847 0.91253 1.24889 0.94954 0.95090 0.99072 1.69898 1.36085 1.22561 1.24178 0.86266 0.79306 0.79122 0.81398 1.20357 1.20989 1.19600 1.86531 1.75889 1.43213 1.21097 1.20813 0.74934 0.85198 0.84548 1.90767 1.49355 1.16268 1.84850 1.19225 1.08006 0.94269 0.92869 1.21312 0.91925 0.93819 0.97275 1.20227 1.06044 1.00140 0.90756 1.19839 0.92377 0.92531 0.86633 1.20552 1.08183 0.93930 0.96605 1.20332 0.92849 1.00389 0.89262 1.21861 1.03566 0.97441 0.90567 1.22786 0.96090 0.85590 0.89314 1.22206 0.95423 1.02968 1.01481 1.21838 0.97612 1.03178 0.97175 1.86831 1.72522 1.46363 1.15209 0.96493 0.88210 0.94390 0.92398 0.83117 0.84782 0.84413 0.88874 0.88978 0.91270 0.90584 0.91595 0.91334 0.90247 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 9.33 37.16 0.35 -3.64 16 2 C 0.22 5.88 2.56 -27.88 -0.07 5.81 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.69 8.90 -34.44 -0.31 -15.00 16 5 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.42 11.32 55.43 0.63 -24.80 16 8 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 O -0.35 -8.50 9.12 -40.60 -0.37 -8.87 16 13 C 0.50 11.03 7.87 34.49 0.27 11.30 16 14 O -0.52 -12.73 15.62 -19.28 -0.30 -13.03 16 15 C -0.14 -2.48 5.88 -104.94 -0.62 -3.10 16 16 C -0.03 -0.38 9.59 -39.28 -0.38 -0.76 16 17 C -0.15 -2.00 10.05 -39.36 -0.40 -2.40 16 18 C 0.13 1.74 6.95 -38.71 -0.27 1.47 16 19 C -0.19 -2.48 6.25 -104.13 -0.65 -3.13 16 20 C -0.01 -0.15 9.58 -39.32 -0.38 -0.53 16 21 C -0.10 -0.91 6.19 -26.50 -0.16 -1.08 16 22 C 0.10 0.88 1.26 -89.72 -0.11 0.77 16 23 C -0.16 -1.24 8.84 37.16 0.33 -0.91 16 24 C -0.14 -0.90 8.96 37.16 0.33 -0.56 16 25 O -0.30 -3.55 10.51 -19.70 -0.21 -3.75 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.15 2.20 7.61 -52.49 -0.40 1.80 16 31 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.14 2.04 7.66 -52.49 -0.40 1.63 16 33 H 0.09 0.73 7.92 -51.92 -0.41 0.32 16 34 H 0.09 0.77 7.91 -51.93 -0.41 0.36 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 38 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 338.54 15.07 5.10 5.10 Total: -1.00 -31.62 338.54 -7.98 -39.61 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.66 Total: -0.26 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.16 Total: -10.13 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.63 Total: -24.80 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.88 Total: -25.66 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.62 -7.98 -39.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842716245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.253 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds