Wall clock time and date at job start Tue Mar 31 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47498 * 2 1 4 4 C 1.50710 * 109.46745 * 240.00589 * 2 1 3 5 5 H 1.07998 * 119.99774 * 240.00100 * 4 2 1 6 6 C 1.37873 * 119.99800 * 60.00026 * 4 2 1 7 7 N 1.31515 * 120.00393 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99803 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47110 * 90.00045 * 8 6 4 10 10 H 1.48498 * 109.47246 * 209.99800 * 8 6 4 11 11 H 1.48495 * 109.47073 * 329.99908 * 8 6 4 12 12 O 1.45202 * 109.47679 * 120.00874 * 2 1 3 13 13 C 1.34741 * 116.99911 * 269.99943 * 12 2 1 14 14 O 1.21513 * 119.99820 * 359.97438 * 13 12 2 15 15 C 1.47470 * 120.00093 * 180.27245 * 13 12 2 16 16 C 1.39806 * 120.27146 * 359.72235 * 15 13 12 17 17 C 1.37449 * 120.19963 * 179.80628 * 16 15 13 18 18 C 1.39604 * 120.43323 * 0.13055 * 17 16 15 19 19 C 1.39206 * 119.11194 * 0.14795 * 18 17 16 20 20 C 1.37277 * 120.94076 * 359.34514 * 19 18 17 21 21 C 1.51677 * 106.99226 * 179.44565 * 19 18 17 22 22 C 1.54706 * 101.89358 * 344.46932 * 21 19 18 23 23 C 1.52999 * 110.74424 * 267.05138 * 22 21 19 24 24 C 1.53002 * 110.89501 * 143.78479 * 22 21 19 25 25 O 1.35987 * 129.71252 * 180.57890 * 18 17 16 26 26 H 1.09005 * 109.46793 * 299.99516 * 1 2 3 27 27 H 1.08996 * 109.47470 * 59.98836 * 1 2 3 28 28 H 1.09001 * 109.47235 * 180.02562 * 1 2 3 29 29 H 0.96994 * 120.00268 * 180.02562 * 7 6 4 30 30 H 1.08001 * 119.90450 * 359.82401 * 16 15 13 31 31 H 1.07997 * 119.78157 * 180.11847 * 17 16 15 32 32 H 1.07998 * 120.07599 * 180.58910 * 20 19 18 33 33 H 1.09009 * 110.94095 * 226.32508 * 21 19 18 34 34 H 1.08994 * 110.95081 * 102.62825 * 21 19 18 35 35 H 1.09001 * 109.47004 * 174.85915 * 23 22 21 36 36 H 1.09003 * 109.46666 * 294.85687 * 23 22 21 37 37 H 1.08998 * 109.47322 * 54.85426 * 23 22 21 38 38 H 1.08997 * 109.47596 * 305.06035 * 24 22 21 39 39 H 1.09003 * 109.47005 * 65.05733 * 24 22 21 40 40 H 1.08996 * 109.46965 * 185.05251 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3211 -1.1200 -4.0082 9 1 1.3424 -2.1613 -4.4121 10 1 2.4863 -0.1410 -5.1124 11 1 3.6290 -1.7581 -3.7126 12 8 2.0141 -0.6846 1.1854 13 6 2.2181 0.0666 2.2852 14 8 1.9979 1.2612 2.2544 15 6 2.7148 -0.5599 3.5244 16 6 2.9705 -1.9338 3.5660 17 6 3.4372 -2.5155 4.7206 18 6 3.6580 -1.7431 5.8623 19 6 3.3961 -0.3767 5.8167 20 6 2.9396 0.2164 4.6659 21 6 3.7140 0.1817 7.1906 22 6 3.7792 -1.1032 8.0498 23 6 2.4200 -1.3985 8.6871 24 6 4.8647 -0.9884 9.1219 25 8 4.1201 -2.1141 7.0863 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8898 28 1 -0.3634 -1.0277 0.0005 29 1 0.7080 1.1612 -3.4842 30 1 2.8010 -2.5399 2.6883 31 1 3.6343 -3.5771 4.7446 32 1 2.7500 1.2794 4.6434 33 1 2.9185 0.8418 7.5366 34 1 4.6737 0.6984 7.1888 35 1 2.4642 -2.3532 9.2113 36 1 2.1706 -0.6071 9.3939 37 1 1.6569 -1.4455 7.9102 38 1 5.8174 -0.7475 8.6501 39 1 4.5983 -0.1998 9.8257 40 1 4.9518 -1.9358 9.6537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842716245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:31 Heat of formation + Delta-G solvation = -120.857926 kcal Electronic energy + Delta-G solvation = -22575.987082 eV Core-core repulsion = 19127.183145 eV Total energy + Delta-G solvation = -3448.803937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.49118 -41.23913 -38.67576 -37.46905 -35.34182 -34.90884 -32.82972 -31.91490 -31.19851 -28.37974 -27.76752 -27.45722 -25.48035 -23.20215 -22.96787 -21.77896 -21.33497 -19.09394 -18.54148 -18.29867 -17.63946 -17.05222 -16.72162 -16.61710 -16.50647 -15.39952 -15.29212 -14.89500 -14.79076 -14.39885 -14.22599 -14.02807 -13.88609 -13.61175 -13.46939 -13.21929 -13.19763 -13.00464 -12.90301 -12.80407 -12.66962 -12.41676 -12.17005 -12.10569 -11.83043 -11.69945 -11.60498 -11.49745 -11.01267 -10.60730 -10.08015 -9.33718 -8.29318 -6.46450 -0.38022 0.19790 1.41807 1.44519 1.49967 1.55767 1.90983 2.10298 2.41155 2.63131 3.01403 3.32847 3.44027 3.71627 3.79962 3.82750 4.01346 4.04543 4.21560 4.40280 4.49530 4.61614 4.64827 4.72877 4.76781 4.78575 4.80021 4.85392 4.88784 4.95732 5.04163 5.13019 5.19119 5.20630 5.27392 5.29535 5.44284 5.47180 5.60455 5.88310 6.03566 6.06064 6.58328 6.91023 7.25037 8.78759 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037912 B = 0.003100 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.370551 B = 9030.678185 C = 9366.632521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.218 3.782 3 H 0.007 0.993 4 C -0.548 4.548 5 H 0.069 0.931 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.265 1.265 12 O -0.355 6.355 13 C 0.496 3.504 14 O -0.555 6.555 15 C -0.171 4.171 16 C -0.024 4.024 17 C -0.150 4.150 18 C 0.140 3.860 19 C -0.191 4.191 20 C -0.013 4.013 21 C -0.097 4.097 22 C 0.093 3.907 23 C -0.163 4.163 24 C -0.138 4.138 25 O -0.302 6.302 26 H 0.022 0.978 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.271 0.729 30 H 0.151 0.849 31 H 0.161 0.839 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.897 -5.648 23.927 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.586 4.586 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.191 1.191 10 H -0.203 1.203 11 H -0.189 1.189 12 O -0.271 6.271 13 C 0.344 3.656 14 O -0.449 6.449 15 C -0.173 4.173 16 C -0.042 4.042 17 C -0.168 4.168 18 C 0.093 3.907 19 C -0.191 4.191 20 C -0.031 4.031 21 C -0.134 4.134 22 C 0.056 3.944 23 C -0.220 4.220 24 C -0.195 4.195 25 O -0.216 6.216 26 H 0.041 0.959 27 H 0.101 0.899 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.152 0.848 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.854 -5.388 23.836 25.128 hybrid contribution -0.145 0.311 -1.299 1.343 sum 5.709 -5.077 22.537 23.797 Atomic orbital electron populations 1.21994 0.96666 1.00524 1.00822 1.20395 0.92100 0.92120 0.78944 0.97519 1.21296 1.33503 1.13971 0.89794 0.91239 1.25861 0.94702 0.95662 1.02198 1.70019 1.36581 1.23673 1.25281 0.85146 0.79037 0.78086 0.76921 1.19071 1.20295 1.18914 1.86516 1.76294 1.43150 1.21161 1.21650 0.73948 0.84960 0.85035 1.90731 1.51139 1.17696 1.85348 1.19029 1.11245 0.95547 0.91452 1.21303 0.92006 0.92719 0.98204 1.20413 1.05037 1.01416 0.89926 1.20042 0.90881 0.92595 0.87189 1.20855 1.06676 0.94305 0.97307 1.20313 0.93226 1.00175 0.89433 1.22044 1.04937 0.98155 0.88221 1.23166 0.97775 0.84275 0.89139 1.22240 0.94024 1.04327 1.01400 1.21890 0.96521 1.04417 0.96676 1.86849 1.72118 1.47639 1.14987 0.95930 0.89879 0.93360 0.91941 0.83158 0.82149 0.84758 0.86996 0.87595 0.90687 0.88106 0.93347 0.91569 0.87730 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.58 9.33 71.98 0.67 -6.90 16 2 C 0.22 12.39 2.56 29.85 0.08 12.46 16 3 H 0.01 0.45 7.16 -2.39 -0.02 0.43 16 4 C -0.55 -31.72 8.90 25.60 0.23 -31.49 16 5 H 0.07 3.91 7.81 -2.91 -0.02 3.89 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -53.47 11.32 21.45 0.24 -53.23 16 8 Si 0.99 43.30 29.54 68.60 2.03 45.33 16 9 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 12 O -0.35 -17.97 9.12 -56.51 -0.52 -18.48 16 13 C 0.50 23.01 7.87 70.26 0.55 23.57 16 14 O -0.56 -28.77 15.62 19.79 0.31 -28.46 16 15 C -0.17 -6.14 5.88 -20.07 -0.12 -6.26 16 16 C -0.02 -0.73 9.59 22.46 0.22 -0.51 16 17 C -0.15 -3.69 10.05 22.41 0.23 -3.47 16 18 C 0.14 3.41 6.95 22.83 0.16 3.57 16 19 C -0.19 -4.65 6.25 -19.55 -0.12 -4.78 16 20 C -0.01 -0.40 9.58 22.44 0.21 -0.19 16 21 C -0.10 -1.55 6.19 30.74 0.19 -1.36 16 22 C 0.09 1.36 1.26 -10.21 -0.01 1.34 16 23 C -0.16 -1.98 8.84 71.98 0.64 -1.34 16 24 C -0.14 -1.25 8.96 71.98 0.65 -0.60 16 25 O -0.30 -6.45 10.51 -93.40 -0.98 -7.43 16 26 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.08 4.70 6.07 -2.39 -0.01 4.68 16 28 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 30 H 0.15 4.45 7.61 -2.91 -0.02 4.42 16 31 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 32 H 0.13 4.10 7.66 -2.91 -0.02 4.08 16 33 H 0.11 1.40 7.92 -2.38 -0.02 1.38 16 34 H 0.11 1.45 7.91 -2.39 -0.02 1.43 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 0.77 8.12 -2.39 -0.02 0.75 16 38 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 39 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -70.48 338.54 6.13 -64.35 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.03 Total: 12.58 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 4.01 Total: -14.64 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.24 Total: -53.23 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -1.19 Total: -54.38 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -70.48 6.13 -64.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842716245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.508 kcal (2) G-P(sol) polarization free energy of solvation -70.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds