Wall clock time and date at job start Tue Mar 31 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47319 * 2 1 4 4 C 1.50701 * 109.46997 * 240.00499 * 2 1 3 5 5 H 1.08002 * 119.99894 * 245.63318 * 4 2 1 6 6 C 1.37874 * 120.00320 * 65.62371 * 4 2 1 7 7 N 1.31513 * 120.00316 * 197.18970 * 6 4 2 8 8 Si 1.86810 * 119.99684 * 17.46964 * 6 4 2 9 9 H 1.48496 * 109.46811 * 179.72411 * 8 6 4 10 10 H 1.48500 * 109.46683 * 299.71905 * 8 6 4 11 11 H 1.48497 * 109.47110 * 59.72249 * 8 6 4 12 12 O 1.45202 * 109.47224 * 120.00485 * 2 1 3 13 13 C 1.34228 * 116.99724 * 270.00249 * 12 2 1 14 14 O 1.20826 * 120.00336 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00044 * 180.02562 * 13 12 2 16 16 C 1.50691 * 109.47670 * 179.97438 * 15 13 12 17 17 C 1.38290 * 120.01019 * 89.99340 * 16 15 13 18 18 C 1.37963 * 119.96095 * 180.02562 * 17 16 15 19 19 C 1.39150 * 120.21789 * 359.92445 * 18 17 16 20 20 C 1.38380 * 119.69123 * 359.96871 * 19 18 17 21 21 C 1.38108 * 120.01044 * 269.72757 * 16 15 13 22 22 C 1.50767 * 121.40403 * 180.26992 * 20 19 18 23 23 C 1.53079 * 109.67626 * 342.18052 * 22 20 19 24 24 C 1.53408 * 108.29610 * 48.21144 * 23 22 20 25 25 O 1.35836 * 118.49938 * 179.77727 * 19 18 17 26 26 H 1.08991 * 109.47526 * 186.33136 * 1 2 3 27 27 H 1.09001 * 109.46823 * 306.33282 * 1 2 3 28 28 H 1.09005 * 109.47333 * 66.32908 * 1 2 3 29 29 H 0.96989 * 119.99777 * 355.16928 * 7 6 4 30 30 H 1.08998 * 109.46885 * 299.99671 * 15 13 12 31 31 H 1.09002 * 109.47038 * 59.99252 * 15 13 12 32 32 H 1.08003 * 120.02160 * 0.10418 * 17 16 15 33 33 H 1.08003 * 119.89605 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.83968 * 0.02761 * 21 16 15 35 35 H 1.08996 * 109.43592 * 222.12025 * 22 20 19 36 36 H 1.08999 * 109.43532 * 102.24270 * 22 20 19 37 37 H 1.09001 * 109.69632 * 288.50756 * 23 22 20 38 38 H 1.09004 * 109.72822 * 167.93218 * 23 22 20 39 39 H 1.09000 * 109.67637 * 175.56016 * 24 23 22 40 40 H 1.08997 * 109.71315 * 55.02148 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5761 -1.6384 -1.1341 6 6 1.7975 -0.1755 -2.4794 7 7 1.9222 -0.9277 -3.5510 8 14 1.3098 1.6197 -2.6500 9 1 1.1228 1.9475 -4.0862 10 1 0.0400 1.8593 -1.9182 11 1 2.3788 2.4793 -2.0812 12 8 2.0140 -0.6846 1.1855 13 6 2.2171 0.0639 2.2811 14 8 1.9981 1.2517 2.2504 15 6 2.7193 -0.5772 3.5491 16 6 2.8622 0.4728 4.6205 17 6 1.7989 0.7552 5.4583 18 6 1.9306 1.7171 6.4385 19 6 3.1313 2.4041 6.5887 20 6 4.1943 2.1178 5.7503 21 6 4.0569 1.1495 4.7695 22 6 5.5143 2.8341 5.8826 23 6 5.3247 4.1187 6.6933 24 6 4.5247 3.7770 7.9569 25 8 3.2211 3.3472 7.5622 26 1 -0.3634 -1.0213 0.1133 27 1 -0.3633 0.6089 0.8279 28 1 -0.3634 0.4126 -0.9412 29 1 2.2468 -1.8380 -3.4694 30 1 2.0105 -1.3374 3.8772 31 1 3.6884 -1.0402 3.3630 32 1 0.8662 0.2222 5.3463 33 1 1.0994 1.9371 7.0921 34 1 4.8870 0.9244 4.1165 35 1 5.8927 3.0834 4.8913 36 1 6.2290 2.1867 6.3908 37 1 4.7779 4.8508 6.0990 38 1 6.2970 4.5246 6.9724 39 1 4.4440 4.6605 8.5902 40 1 5.0249 2.9778 8.5038 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842716729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:03 Heat of formation + Delta-G solvation = -116.405221 kcal Electronic energy + Delta-G solvation = -22620.420726 eV Core-core repulsion = 19171.809872 eV Total energy + Delta-G solvation = -3448.610853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82990 -39.69403 -37.82069 -35.80637 -34.49406 -33.25103 -32.41062 -30.59870 -30.37388 -27.90622 -25.67348 -24.91289 -23.60855 -22.64705 -21.56743 -19.92282 -19.33237 -17.89434 -17.72126 -16.91020 -16.86369 -15.96162 -15.59345 -15.25186 -14.80377 -14.59855 -14.11704 -14.04508 -13.75097 -13.45199 -13.32258 -12.95812 -12.79859 -12.54492 -12.52823 -11.96158 -11.68842 -11.61685 -11.51766 -11.39060 -11.10530 -10.97646 -10.57296 -10.55376 -10.08644 -9.97426 -9.71622 -9.66927 -8.94463 -8.81831 -8.35177 -8.11695 -6.64217 -4.24342 1.27605 1.33458 2.88920 3.12585 3.32627 3.40043 3.41017 3.55447 3.92051 4.36686 4.37321 4.43789 4.52581 4.71493 4.75365 4.91332 5.06519 5.11625 5.17189 5.23791 5.30947 5.37860 5.49536 5.58826 5.60911 5.63754 5.76487 5.81883 6.00071 6.17923 6.23526 6.34489 6.47030 6.50499 6.57889 6.69241 6.75459 7.17218 7.33375 7.41366 7.84025 8.24792 8.52520 8.85086 9.43498 10.78799 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.003412 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.741405 B = 8204.130526 C = 8517.136678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.195 3.805 3 H 0.037 0.963 4 C -0.607 4.607 5 H 0.068 0.932 6 C 0.039 3.961 7 N -0.894 5.894 8 Si 1.038 2.962 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.279 1.279 12 O -0.347 6.347 13 C 0.450 3.550 14 O -0.515 6.515 15 C -0.074 4.074 16 C -0.097 4.097 17 C -0.071 4.071 18 C -0.147 4.147 19 C 0.128 3.872 20 C -0.160 4.160 21 C -0.067 4.067 22 C -0.078 4.078 23 C -0.160 4.160 24 C 0.062 3.938 25 O -0.318 6.318 26 H 0.054 0.946 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.271 0.729 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 6.058 23.120 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.141 3.859 3 H 0.055 0.945 4 C -0.645 4.645 5 H 0.086 0.914 6 C -0.167 4.167 7 N -0.527 5.527 8 Si 0.865 3.135 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.205 1.205 12 O -0.263 6.263 13 C 0.292 3.708 14 O -0.405 6.405 15 C -0.111 4.111 16 C -0.097 4.097 17 C -0.089 4.089 18 C -0.166 4.166 19 C 0.083 3.917 20 C -0.161 4.161 21 C -0.085 4.085 22 C -0.115 4.115 23 C -0.198 4.198 24 C -0.014 4.014 25 O -0.232 6.232 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.771 7.636 22.029 23.798 hybrid contribution 0.671 -1.128 0.917 1.601 sum 5.441 6.507 22.945 24.463 Atomic orbital electron populations 1.22562 0.98069 1.01011 1.00969 1.20854 0.90937 0.93976 0.80086 0.94521 1.21932 1.41868 1.10979 0.89731 0.91373 1.25668 0.94526 1.05172 0.91350 1.70866 1.40828 1.10114 1.30925 0.84138 0.77651 0.75065 0.76611 1.20413 1.19749 1.20467 1.86544 1.75826 1.43062 1.20830 1.23380 0.75175 0.86171 0.86057 1.90611 1.48367 1.16850 1.84639 1.20236 1.04450 0.97259 0.89179 1.19202 0.94348 0.99081 0.97053 1.20779 0.97955 0.96437 0.93699 1.20493 0.96683 0.97820 1.01565 1.18652 0.94358 0.89706 0.88943 1.19702 0.96316 1.01198 0.98850 1.20748 0.97319 0.94229 0.96222 1.20459 0.94018 0.95453 1.01528 1.22240 1.01649 0.98503 0.97407 1.22937 0.82143 1.00125 0.96152 1.85982 1.30399 1.54251 1.52589 0.92692 0.95066 0.91015 0.91848 0.87273 0.87299 0.85369 0.85261 0.85768 0.89882 0.90537 0.90325 0.89803 0.87704 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 9.22 37.16 0.34 -3.61 16 2 C 0.20 5.04 2.14 -27.88 -0.06 4.98 16 3 H 0.04 0.99 5.81 -51.93 -0.30 0.69 16 4 C -0.61 -17.60 9.16 -34.44 -0.32 -17.92 16 5 H 0.07 2.11 8.06 -52.49 -0.42 1.68 16 6 C 0.04 1.13 5.29 -17.82 -0.09 1.04 16 7 N -0.89 -27.16 13.70 55.43 0.76 -26.40 16 8 Si 1.04 25.39 26.29 -169.99 -4.47 20.92 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.27 -6.17 5.76 56.52 0.33 -5.84 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 O -0.35 -8.09 9.86 -39.25 -0.39 -8.47 16 13 C 0.45 9.01 7.92 36.01 0.29 9.30 16 14 O -0.52 -11.73 15.25 -18.75 -0.29 -12.01 16 15 C -0.07 -1.04 5.94 -29.04 -0.17 -1.21 16 16 C -0.10 -1.35 4.37 -104.65 -0.46 -1.81 16 17 C -0.07 -0.93 9.70 -39.66 -0.38 -1.31 16 18 C -0.15 -1.88 9.94 -39.34 -0.39 -2.28 16 19 C 0.13 1.68 6.47 -39.19 -0.25 1.42 16 20 C -0.16 -2.00 5.75 -104.44 -0.60 -2.60 16 21 C -0.07 -0.90 9.32 -39.53 -0.37 -1.27 16 22 C -0.08 -0.73 5.86 -27.81 -0.16 -0.89 16 23 C -0.16 -1.27 6.19 -26.48 -0.16 -1.43 16 24 C 0.06 0.50 7.03 37.37 0.26 0.76 16 25 O -0.32 -3.79 10.27 -19.23 -0.20 -3.98 16 26 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.69 4.88 -51.93 -0.25 1.44 16 29 H 0.27 8.16 8.73 -40.82 -0.36 7.81 16 30 H 0.11 1.27 8.09 -51.93 -0.42 0.85 16 31 H 0.11 1.32 8.08 -51.93 -0.42 0.90 16 32 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 33 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -33.78 332.61 -7.80 -41.58 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.70 Total: 0.19 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -2.53 Total: -16.84 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.76 Total: -26.40 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.87 Total: -24.47 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -4.47 Total: 20.92 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.78 -7.80 -41.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842716729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.824 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds