Wall clock time and date at job start Tue Mar 31 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47319 * 2 1 4 4 C 1.50701 * 109.46997 * 240.00499 * 2 1 3 5 5 H 1.08002 * 119.99894 * 245.63318 * 4 2 1 6 6 C 1.37874 * 120.00320 * 65.62371 * 4 2 1 7 7 N 1.31513 * 120.00316 * 197.18970 * 6 4 2 8 8 Si 1.86810 * 119.99684 * 17.46964 * 6 4 2 9 9 H 1.48496 * 109.46811 * 179.72411 * 8 6 4 10 10 H 1.48500 * 109.46683 * 299.71905 * 8 6 4 11 11 H 1.48497 * 109.47110 * 59.72249 * 8 6 4 12 12 O 1.45202 * 109.47224 * 120.00485 * 2 1 3 13 13 C 1.34228 * 116.99724 * 270.00249 * 12 2 1 14 14 O 1.20826 * 120.00336 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00044 * 180.02562 * 13 12 2 16 16 C 1.50691 * 109.47670 * 179.97438 * 15 13 12 17 17 C 1.38290 * 120.01019 * 89.99340 * 16 15 13 18 18 C 1.37963 * 119.96095 * 180.02562 * 17 16 15 19 19 C 1.39150 * 120.21789 * 359.92445 * 18 17 16 20 20 C 1.38380 * 119.69123 * 359.96871 * 19 18 17 21 21 C 1.38108 * 120.01044 * 269.72757 * 16 15 13 22 22 C 1.50767 * 121.40403 * 180.26992 * 20 19 18 23 23 C 1.53079 * 109.67626 * 342.18052 * 22 20 19 24 24 C 1.53408 * 108.29610 * 48.21144 * 23 22 20 25 25 O 1.35836 * 118.49938 * 179.77727 * 19 18 17 26 26 H 1.08991 * 109.47526 * 186.33136 * 1 2 3 27 27 H 1.09001 * 109.46823 * 306.33282 * 1 2 3 28 28 H 1.09005 * 109.47333 * 66.32908 * 1 2 3 29 29 H 0.96989 * 119.99777 * 355.16928 * 7 6 4 30 30 H 1.08998 * 109.46885 * 299.99671 * 15 13 12 31 31 H 1.09002 * 109.47038 * 59.99252 * 15 13 12 32 32 H 1.08003 * 120.02160 * 0.10418 * 17 16 15 33 33 H 1.08003 * 119.89605 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.83968 * 0.02761 * 21 16 15 35 35 H 1.08996 * 109.43592 * 222.12025 * 22 20 19 36 36 H 1.08999 * 109.43532 * 102.24270 * 22 20 19 37 37 H 1.09001 * 109.69632 * 288.50756 * 23 22 20 38 38 H 1.09004 * 109.72822 * 167.93218 * 23 22 20 39 39 H 1.09000 * 109.67637 * 175.56016 * 24 23 22 40 40 H 1.08997 * 109.71315 * 55.02148 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5761 -1.6384 -1.1341 6 6 1.7975 -0.1755 -2.4794 7 7 1.9222 -0.9277 -3.5510 8 14 1.3098 1.6197 -2.6500 9 1 1.1228 1.9475 -4.0862 10 1 0.0400 1.8593 -1.9182 11 1 2.3788 2.4793 -2.0812 12 8 2.0140 -0.6846 1.1855 13 6 2.2171 0.0639 2.2811 14 8 1.9981 1.2517 2.2504 15 6 2.7193 -0.5772 3.5491 16 6 2.8622 0.4728 4.6205 17 6 1.7989 0.7552 5.4583 18 6 1.9306 1.7171 6.4385 19 6 3.1313 2.4041 6.5887 20 6 4.1943 2.1178 5.7503 21 6 4.0569 1.1495 4.7695 22 6 5.5143 2.8341 5.8826 23 6 5.3247 4.1187 6.6933 24 6 4.5247 3.7770 7.9569 25 8 3.2211 3.3472 7.5622 26 1 -0.3634 -1.0213 0.1133 27 1 -0.3633 0.6089 0.8279 28 1 -0.3634 0.4126 -0.9412 29 1 2.2468 -1.8380 -3.4694 30 1 2.0105 -1.3374 3.8772 31 1 3.6884 -1.0402 3.3630 32 1 0.8662 0.2222 5.3463 33 1 1.0994 1.9371 7.0921 34 1 4.8870 0.9244 4.1165 35 1 5.8927 3.0834 4.8913 36 1 6.2290 2.1867 6.3908 37 1 4.7779 4.8508 6.0990 38 1 6.2970 4.5246 6.9724 39 1 4.4440 4.6605 8.5902 40 1 5.0249 2.9778 8.5038 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842716729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:02 Heat of formation + Delta-G solvation = -136.141866 kcal Electronic energy + Delta-G solvation = -22621.276571 eV Core-core repulsion = 19171.809872 eV Total energy + Delta-G solvation = -3449.466698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.78614 -41.23962 -38.85255 -37.52914 -35.37164 -35.26160 -33.55478 -32.34842 -31.42919 -28.96625 -27.03043 -26.47035 -24.58505 -23.75749 -23.03739 -21.48047 -20.43165 -19.84208 -18.76056 -18.60793 -17.78214 -17.29598 -16.85065 -16.66873 -15.94385 -15.56435 -15.41214 -15.08494 -14.92184 -14.85115 -14.70060 -14.33825 -14.17374 -14.08102 -13.70058 -13.43777 -13.33742 -13.02255 -12.57068 -12.48791 -12.30112 -12.08143 -11.88692 -11.78879 -11.72714 -11.62737 -11.39969 -11.32596 -11.05254 -10.57465 -9.75937 -9.08232 -8.94607 -6.57284 0.29924 0.35320 1.31219 1.38631 1.45004 1.64636 2.01290 2.33478 2.36226 2.78639 2.89169 3.57154 3.66938 3.75852 3.81900 3.96766 4.01858 4.14512 4.26506 4.27871 4.37707 4.45418 4.53110 4.57050 4.60322 4.61724 4.63538 4.71337 4.86155 4.90785 5.00744 5.07816 5.15092 5.23693 5.28889 5.42141 5.46793 5.58473 5.77968 5.84039 5.95739 6.38620 6.47910 6.92587 7.20587 8.46915 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.003412 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.741405 B = 8204.130526 C = 8517.136678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.195 3.805 3 H 0.027 0.973 4 C -0.618 4.618 5 H 0.033 0.967 6 C -0.002 4.002 7 N -0.918 5.918 8 Si 1.072 2.928 9 H -0.271 1.271 10 H -0.242 1.242 11 H -0.271 1.271 12 O -0.361 6.361 13 C 0.447 3.553 14 O -0.543 6.543 15 C -0.062 4.062 16 C -0.115 4.115 17 C -0.078 4.078 18 C -0.159 4.159 19 C 0.118 3.882 20 C -0.169 4.169 21 C -0.081 4.081 22 C -0.081 4.081 23 C -0.157 4.157 24 C 0.053 3.947 25 O -0.333 6.333 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.259 0.741 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.509 7.374 25.153 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.140 3.860 3 H 0.045 0.955 4 C -0.656 4.656 5 H 0.051 0.949 6 C -0.203 4.203 7 N -0.552 5.552 8 Si 0.892 3.108 9 H -0.196 1.196 10 H -0.166 1.166 11 H -0.196 1.196 12 O -0.277 6.277 13 C 0.292 3.708 14 O -0.434 6.434 15 C -0.098 4.098 16 C -0.116 4.116 17 C -0.096 4.096 18 C -0.177 4.177 19 C 0.073 3.927 20 C -0.170 4.170 21 C -0.099 4.099 22 C -0.118 4.118 23 C -0.194 4.194 24 C -0.021 4.021 25 O -0.247 6.247 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.156 0.844 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.147 0.853 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.841 8.931 24.095 26.149 hybrid contribution 0.750 -1.559 0.406 1.777 sum 5.591 7.372 24.502 26.190 Atomic orbital electron populations 1.22438 0.96065 1.01760 1.01645 1.20597 0.92339 0.92869 0.80173 0.95493 1.22071 1.41666 1.09950 0.91898 0.94895 1.26996 0.93927 1.08389 0.90973 1.70972 1.42542 1.09856 1.31835 0.83727 0.79039 0.70501 0.77495 1.19628 1.16616 1.19635 1.86532 1.76378 1.43578 1.21229 1.24510 0.73998 0.85945 0.86393 1.90590 1.49625 1.18206 1.84993 1.20352 1.05933 0.97607 0.85953 1.19294 0.95033 0.99776 0.97466 1.21010 0.98370 0.96632 0.93600 1.20756 0.97294 0.97865 1.01821 1.18877 0.94589 0.89863 0.89346 1.20053 0.97601 1.00999 0.98308 1.20982 0.97583 0.94583 0.96754 1.20567 0.92814 0.96298 1.02074 1.22243 1.02961 0.97354 0.96844 1.23282 0.80784 1.01501 0.96569 1.85961 1.32764 1.53837 1.52168 0.92256 0.93143 0.91190 0.93129 0.84387 0.85195 0.83895 0.83971 0.85107 0.90056 0.88718 0.91839 0.86878 0.85268 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.33 9.22 71.98 0.66 -6.67 16 2 C 0.19 9.98 2.14 29.85 0.06 10.05 16 3 H 0.03 1.45 5.81 -2.39 -0.01 1.43 16 4 C -0.62 -36.47 9.16 25.60 0.23 -36.23 16 5 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 6 C 0.00 -0.13 5.29 84.65 0.45 0.32 16 7 N -0.92 -56.70 13.70 21.45 0.29 -56.41 16 8 Si 1.07 50.30 26.29 68.60 1.80 52.11 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.24 -10.17 5.76 99.48 0.57 -9.60 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 O -0.36 -16.69 9.86 -51.39 -0.51 -17.20 16 13 C 0.45 17.45 7.92 71.24 0.56 18.02 16 14 O -0.54 -24.31 15.25 21.96 0.34 -23.97 16 15 C -0.06 -1.62 5.94 29.10 0.17 -1.45 16 16 C -0.12 -3.07 4.37 -19.89 -0.09 -3.16 16 17 C -0.08 -1.95 9.70 22.22 0.22 -1.73 16 18 C -0.16 -3.90 9.94 22.42 0.22 -3.67 16 19 C 0.12 2.96 6.47 22.52 0.15 3.10 16 20 C -0.17 -4.03 5.75 -19.75 -0.11 -4.14 16 21 C -0.08 -2.08 9.32 22.30 0.21 -1.88 16 22 C -0.08 -1.37 5.86 29.90 0.18 -1.20 16 23 C -0.16 -2.12 6.19 30.76 0.19 -1.93 16 24 C 0.05 0.72 7.03 72.12 0.51 1.23 16 25 O -0.33 -7.41 10.27 -91.71 -0.94 -8.36 16 26 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 3.16 4.88 -2.38 -0.01 3.15 16 29 H 0.26 16.15 8.73 -92.72 -0.81 15.34 16 30 H 0.14 2.84 8.09 -2.39 -0.02 2.82 16 31 H 0.13 2.89 8.08 -2.39 -0.02 2.87 16 32 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 34 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -73.84 332.61 5.46 -68.38 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.86 Total: 14.79 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 3.61 Total: -29.34 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.29 Total: -56.41 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -1.11 Total: -49.52 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 1.80 Total: 52.11 kcal Total: -73.84 5.46 -68.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842716729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.760 kcal (2) G-P(sol) polarization free energy of solvation -73.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds