Wall clock time and date at job start Tue Mar 31 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.31000 * 119.99836 * 2 1 4 4 C 1.50700 * 119.99840 * 174.93362 * 3 2 1 5 5 C 1.50699 * 119.99983 * 354.92808 * 3 2 1 6 6 O 1.45201 * 109.47086 * 123.62420 * 5 3 2 7 7 C 1.34228 * 117.00246 * 180.02562 * 6 5 3 8 8 O 1.20828 * 119.99875 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99827 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.46831 * 179.97438 * 9 7 6 11 11 C 1.38320 * 119.96286 * 270.01695 * 10 9 7 12 12 C 1.38281 * 120.13804 * 180.02562 * 11 10 9 13 13 C 1.38134 * 120.06509 * 359.67983 * 12 11 10 14 14 C 1.38854 * 119.93086 * 0.59212 * 13 12 11 15 15 O 1.35746 * 120.07039 * 179.69920 * 14 13 12 16 16 C 1.34837 * 116.99968 * 354.16274 * 15 14 13 17 17 H 1.08002 * 119.99697 * 5.03417 * 16 15 14 18 18 C 1.38652 * 119.99955 * 185.03247 * 16 15 14 19 19 N 1.31549 * 120.00132 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99704 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46834 * 59.99980 * 20 18 16 22 22 H 1.48494 * 109.46921 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46971 * 300.00096 * 20 18 16 24 24 C 1.38080 * 119.96452 * 89.99517 * 10 9 7 25 25 H 1.08995 * 109.47439 * 60.00097 * 1 2 3 26 26 H 1.08995 * 109.47015 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47082 * 300.00097 * 1 2 3 28 28 H 1.07994 * 120.00083 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46977 * 269.99740 * 4 3 2 30 30 H 1.08994 * 109.47058 * 29.99829 * 4 3 2 31 31 H 1.09002 * 109.46916 * 150.00073 * 4 3 2 32 32 H 1.09002 * 109.47311 * 3.62397 * 5 3 2 33 33 H 1.09003 * 109.47375 * 243.62074 * 5 3 2 34 34 H 1.08987 * 109.47446 * 59.99307 * 9 7 6 35 35 H 1.09000 * 109.46960 * 299.99109 * 9 7 6 36 36 H 1.07997 * 119.93369 * 359.97438 * 11 10 9 37 37 H 1.07991 * 119.96840 * 179.97438 * 12 11 10 38 38 H 1.07998 * 120.03365 * 180.31776 * 13 12 11 39 39 H 0.97008 * 120.00139 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.04001 * 0.04684 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6646 1.1371 0.1153 5 6 1.4129 2.4370 -0.1154 6 8 1.7402 3.2855 1.0165 7 6 1.1513 4.4907 1.0652 8 8 0.3879 4.8258 0.1906 9 6 1.4432 5.4263 2.2100 10 6 0.6623 6.7023 2.0275 11 6 1.2172 7.7576 1.3263 12 6 0.5041 8.9302 1.1571 13 6 -0.7678 9.0486 1.6827 14 6 -1.3254 7.9931 2.3920 15 8 -2.5727 8.1086 2.9150 16 6 -3.1691 9.3138 2.8153 17 1 -2.6892 10.1098 2.2653 18 6 -4.3982 9.5311 3.4190 19 7 -4.9829 8.5613 4.0884 20 14 -5.2247 11.2007 3.2803 21 1 -5.4668 11.5157 1.8495 22 1 -6.5189 11.1743 4.0078 23 1 -4.3448 12.2393 3.8738 24 6 -0.6065 6.8165 2.5601 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.0470 -0.9353 0.0004 29 1 3.9482 1.1831 1.1667 30 1 4.0646 0.2259 -0.3294 31 1 4.0676 2.0041 -0.4081 32 1 0.3408 2.2401 -0.1238 33 1 1.6974 2.9392 -1.0401 34 1 2.5091 5.6530 2.2313 35 1 1.1534 4.9537 3.1484 36 1 2.2098 7.6658 0.9107 37 1 0.9401 9.7525 0.6095 38 1 -1.3263 9.9627 1.5459 39 1 -5.8427 8.7135 4.5111 40 1 -1.0391 5.9924 3.1079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842847563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:50 Heat of formation + Delta-G solvation = -81.586419 kcal Electronic energy + Delta-G solvation = -21903.686571 eV Core-core repulsion = 18456.585574 eV Total energy + Delta-G solvation = -3447.100997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.44164 -38.98250 -37.46129 -36.48702 -35.58234 -32.44882 -32.06096 -30.44671 -29.28096 -28.06456 -26.62758 -25.23525 -24.51838 -21.94808 -21.51177 -20.29440 -18.54371 -17.62431 -17.54661 -16.96532 -16.60818 -15.83759 -15.22228 -14.94870 -14.53949 -14.39804 -14.34158 -13.93257 -13.58977 -13.51694 -13.11193 -12.95295 -12.76578 -12.54511 -12.44671 -12.31964 -11.86015 -11.75372 -11.55864 -11.26751 -11.20436 -10.85337 -10.79061 -10.63647 -10.62230 -10.45514 -10.28855 -9.33906 -9.10388 -8.82004 -8.10517 -7.22424 -6.42441 -4.01716 1.60197 2.05061 2.37723 2.40574 3.03017 3.14815 3.16708 3.18539 3.98371 4.41238 4.58530 4.60470 4.86252 4.96223 5.00252 5.09178 5.11827 5.19270 5.28621 5.35823 5.38622 5.48464 5.52768 5.58732 5.65356 5.70186 5.74904 5.80916 5.92498 6.16596 6.25672 6.32995 6.47601 6.53230 6.66268 6.90745 7.07159 7.23734 7.36227 7.43989 7.80924 7.93592 8.02182 9.03036 9.73181 10.75646 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.002960 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.474564 B = 9457.242411 C =10261.757250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.141 4.141 3 C -0.137 4.137 4 C -0.111 4.111 5 C 0.098 3.902 6 O -0.357 6.357 7 C 0.458 3.542 8 O -0.490 6.490 9 C -0.064 4.064 10 C -0.044 4.044 11 C -0.195 4.195 12 C -0.074 4.074 13 C -0.228 4.228 14 C 0.154 3.846 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.172 4.172 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.270 0.730 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.823 -12.283 -5.937 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C -0.137 4.137 4 C -0.168 4.168 5 C 0.024 3.976 6 O -0.275 6.275 7 C 0.300 3.700 8 O -0.376 6.376 9 C -0.101 4.101 10 C -0.044 4.044 11 C -0.214 4.214 12 C -0.093 4.093 13 C -0.247 4.247 14 C 0.101 3.899 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.191 4.191 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.135 0.865 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.195 -12.401 -5.982 19.775 hybrid contribution -0.500 0.846 -0.312 1.031 sum 13.694 -11.555 -6.294 18.991 Atomic orbital electron populations 1.20957 0.92965 1.02665 1.02493 1.22780 0.96328 0.97227 0.99617 1.21368 0.96429 0.93036 1.02847 1.20729 0.91362 1.02145 1.02527 1.22034 0.99775 0.87759 0.87999 1.86536 1.66172 1.27633 1.47148 1.23873 0.77874 0.80649 0.87578 1.90720 1.33097 1.75044 1.38708 1.20260 1.02438 0.91719 0.95701 1.18674 0.93906 0.93013 0.98837 1.20369 1.00404 0.94644 1.05960 1.20690 0.94037 0.96658 0.97885 1.21206 0.97233 1.00794 1.05471 1.19259 0.85822 0.93183 0.91675 1.83977 1.22142 1.33935 1.68131 1.21276 1.02862 0.87808 1.34887 0.89141 1.25277 0.96003 0.99478 0.95721 1.70029 1.16372 1.31928 1.31547 0.85786 0.78556 0.80311 0.78805 1.19516 1.20289 1.19504 1.19969 0.94239 0.97633 1.07301 0.91367 0.91724 0.91100 0.86478 0.90937 0.91964 0.91881 0.90180 0.90533 0.87203 0.87067 0.87752 0.87326 0.85508 0.91998 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.66 36.01 0.31 -0.80 16 2 C -0.14 -1.19 9.85 -36.02 -0.36 -1.54 16 3 C -0.14 -1.31 5.74 -101.07 -0.58 -1.89 16 4 C -0.11 -0.87 9.92 36.01 0.36 -0.52 16 5 C 0.10 1.15 5.52 36.01 0.20 1.35 16 6 O -0.36 -4.74 10.10 -39.25 -0.40 -5.14 16 7 C 0.46 7.06 7.95 36.01 0.29 7.34 16 8 O -0.49 -9.40 15.78 -18.75 -0.30 -9.70 16 9 C -0.06 -0.88 5.94 -29.03 -0.17 -1.05 16 10 C -0.04 -0.80 4.37 -104.65 -0.46 -1.26 16 11 C -0.19 -3.49 9.70 -39.54 -0.38 -3.87 16 12 C -0.07 -1.42 10.04 -39.60 -0.40 -1.81 16 13 C -0.23 -5.10 9.17 -39.39 -0.36 -5.47 16 14 C 0.15 3.84 6.65 -39.11 -0.26 3.58 16 15 O -0.18 -5.20 9.76 0.04 0.00 -5.20 16 16 C -0.39 -11.14 9.49 30.89 0.29 -10.85 16 17 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16 20 Si 0.94 20.75 29.55 -169.99 -5.02 15.73 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 24 C -0.17 -3.75 9.65 -39.39 -0.38 -4.13 16 25 H 0.07 0.57 7.60 -51.93 -0.39 0.17 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.65 7.91 -51.92 -0.41 0.24 16 28 H 0.12 0.78 8.02 -52.49 -0.42 0.36 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.39 8.04 -51.93 -0.42 -0.03 16 31 H 0.06 0.50 8.12 -51.93 -0.42 0.07 16 32 H 0.08 0.97 5.78 -51.93 -0.30 0.67 16 33 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 34 H 0.11 1.18 8.08 -51.94 -0.42 0.76 16 35 H 0.11 1.33 8.08 -51.93 -0.42 0.91 16 36 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 347.70 15.07 5.24 5.24 Total: -1.00 -33.14 347.70 -7.16 -40.30 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.45 Total: 3.56 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -2.00 Total: -19.92 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.76 Total: -24.87 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.69 Total: -20.03 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.14 -7.16 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842847563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.287 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds