Wall clock time and date at job start Tue Mar 31 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.31000 * 119.99836 * 2 1 4 4 C 1.50700 * 119.99840 * 174.93362 * 3 2 1 5 5 C 1.50699 * 119.99983 * 354.92808 * 3 2 1 6 6 O 1.45201 * 109.47086 * 123.62420 * 5 3 2 7 7 C 1.34228 * 117.00246 * 180.02562 * 6 5 3 8 8 O 1.20828 * 119.99875 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99827 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.46831 * 179.97438 * 9 7 6 11 11 C 1.38320 * 119.96286 * 270.01695 * 10 9 7 12 12 C 1.38281 * 120.13804 * 180.02562 * 11 10 9 13 13 C 1.38134 * 120.06509 * 359.67983 * 12 11 10 14 14 C 1.38854 * 119.93086 * 0.59212 * 13 12 11 15 15 O 1.35746 * 120.07039 * 179.69920 * 14 13 12 16 16 C 1.34837 * 116.99968 * 354.16274 * 15 14 13 17 17 H 1.08002 * 119.99697 * 5.03417 * 16 15 14 18 18 C 1.38652 * 119.99955 * 185.03247 * 16 15 14 19 19 N 1.31549 * 120.00132 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99704 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46834 * 59.99980 * 20 18 16 22 22 H 1.48494 * 109.46921 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46971 * 300.00096 * 20 18 16 24 24 C 1.38080 * 119.96452 * 89.99517 * 10 9 7 25 25 H 1.08995 * 109.47439 * 60.00097 * 1 2 3 26 26 H 1.08995 * 109.47015 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47082 * 300.00097 * 1 2 3 28 28 H 1.07994 * 120.00083 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46977 * 269.99740 * 4 3 2 30 30 H 1.08994 * 109.47058 * 29.99829 * 4 3 2 31 31 H 1.09002 * 109.46916 * 150.00073 * 4 3 2 32 32 H 1.09002 * 109.47311 * 3.62397 * 5 3 2 33 33 H 1.09003 * 109.47375 * 243.62074 * 5 3 2 34 34 H 1.08987 * 109.47446 * 59.99307 * 9 7 6 35 35 H 1.09000 * 109.46960 * 299.99109 * 9 7 6 36 36 H 1.07997 * 119.93369 * 359.97438 * 11 10 9 37 37 H 1.07991 * 119.96840 * 179.97438 * 12 11 10 38 38 H 1.07998 * 120.03365 * 180.31776 * 13 12 11 39 39 H 0.97008 * 120.00139 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.04001 * 0.04684 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6646 1.1371 0.1153 5 6 1.4129 2.4370 -0.1154 6 8 1.7402 3.2855 1.0165 7 6 1.1513 4.4907 1.0652 8 8 0.3879 4.8258 0.1906 9 6 1.4432 5.4263 2.2100 10 6 0.6623 6.7023 2.0275 11 6 1.2172 7.7576 1.3263 12 6 0.5041 8.9302 1.1571 13 6 -0.7678 9.0486 1.6827 14 6 -1.3254 7.9931 2.3920 15 8 -2.5727 8.1086 2.9150 16 6 -3.1691 9.3138 2.8153 17 1 -2.6892 10.1098 2.2653 18 6 -4.3982 9.5311 3.4190 19 7 -4.9829 8.5613 4.0884 20 14 -5.2247 11.2007 3.2803 21 1 -5.4668 11.5157 1.8495 22 1 -6.5189 11.1743 4.0078 23 1 -4.3448 12.2393 3.8738 24 6 -0.6065 6.8165 2.5601 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.0470 -0.9353 0.0004 29 1 3.9482 1.1831 1.1667 30 1 4.0646 0.2259 -0.3294 31 1 4.0676 2.0041 -0.4081 32 1 0.3408 2.2401 -0.1238 33 1 1.6974 2.9392 -1.0401 34 1 2.5091 5.6530 2.2313 35 1 1.1534 4.9537 3.1484 36 1 2.2098 7.6658 0.9107 37 1 0.9401 9.7525 0.6095 38 1 -1.3263 9.9627 1.5459 39 1 -5.8427 8.7135 4.5111 40 1 -1.0391 5.9924 3.1079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842847563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:49 Heat of formation + Delta-G solvation = -100.262977 kcal Electronic energy + Delta-G solvation = -21904.496448 eV Core-core repulsion = 18456.585574 eV Total energy + Delta-G solvation = -3447.910873 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66877 -40.69202 -38.68646 -37.96746 -36.59981 -34.36398 -33.61443 -31.12341 -30.94493 -29.32095 -27.80280 -27.19280 -25.20808 -23.45516 -23.09998 -21.75450 -19.60069 -19.26485 -18.75207 -18.72595 -17.73191 -16.95756 -16.73292 -16.41887 -16.12821 -15.79052 -15.51627 -15.15381 -15.05137 -14.72608 -14.38786 -14.06705 -13.97007 -13.78253 -13.64409 -13.56320 -12.97059 -12.94761 -12.90466 -12.50821 -12.44675 -12.38149 -12.25418 -12.14550 -12.03996 -11.64350 -11.53869 -11.22610 -10.80529 -9.82547 -9.69395 -9.01289 -8.47468 -6.16356 0.39782 0.72187 0.92260 1.19452 1.34094 1.45183 1.50760 1.94975 2.17539 2.83530 3.15721 3.39153 3.63981 3.75505 3.86387 4.01763 4.07633 4.20110 4.28853 4.34582 4.36956 4.38345 4.53853 4.59989 4.68126 4.71571 4.73335 4.88733 4.92001 5.01998 5.05588 5.11242 5.21487 5.25786 5.38032 5.60828 5.61274 5.68982 5.71619 5.84099 6.01451 6.19905 6.74791 6.96861 7.77624 8.75802 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.002960 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.474564 B = 9457.242411 C =10261.757250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C -0.153 4.153 4 C -0.108 4.108 5 C 0.092 3.908 6 O -0.348 6.348 7 C 0.464 3.536 8 O -0.537 6.537 9 C -0.062 4.062 10 C -0.037 4.037 11 C -0.176 4.176 12 C -0.073 4.073 13 C -0.242 4.242 14 C 0.112 3.888 15 O -0.234 6.234 16 C -0.416 4.416 17 H 0.101 0.899 18 C -0.023 4.023 19 N -0.922 5.922 20 Si 1.020 2.980 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.255 1.255 24 C -0.190 4.190 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.141 0.859 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.987 -12.437 -6.947 22.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C -0.153 4.153 4 C -0.165 4.165 5 C 0.019 3.981 6 O -0.265 6.265 7 C 0.308 3.692 8 O -0.426 6.426 9 C -0.098 4.098 10 C -0.038 4.038 11 C -0.195 4.195 12 C -0.090 4.090 13 C -0.262 4.262 14 C 0.062 3.938 15 O -0.141 6.141 16 C -0.492 4.492 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.180 1.180 24 C -0.209 4.209 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.159 0.841 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.174 0.826 35 H 0.149 0.851 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.138 0.862 39 H 0.082 0.918 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.434 -12.580 -7.005 22.612 hybrid contribution -1.186 0.695 -0.118 1.380 sum 16.248 -11.885 -7.123 21.354 Atomic orbital electron populations 1.21002 0.93340 1.03544 1.01669 1.23032 0.96253 0.97859 0.97769 1.21439 0.97402 0.92017 1.04482 1.20738 0.89967 1.03043 1.02735 1.22206 0.99774 0.88644 0.87444 1.86532 1.65423 1.26886 1.47698 1.24101 0.76842 0.81130 0.87085 1.90718 1.35169 1.76074 1.40611 1.20390 1.04248 0.89332 0.95850 1.19134 0.92513 0.95264 0.96858 1.21011 1.01830 0.93350 1.03283 1.21155 0.92473 0.98461 0.96949 1.21350 0.98898 0.99975 1.05940 1.19851 0.85528 0.95314 0.93135 1.83938 1.24560 1.34701 1.70855 1.21799 1.03611 0.88286 1.35463 0.88131 1.26613 0.96361 1.04083 0.95008 1.70182 1.17243 1.34777 1.33815 0.84641 0.77437 0.74696 0.79382 1.18295 1.19539 1.17953 1.20238 0.95831 0.96656 1.08204 0.91796 0.90017 0.92393 0.84107 0.90847 0.90155 0.92087 0.91187 0.90700 0.82649 0.85070 0.83148 0.83406 0.86242 0.91822 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.66 71.24 0.62 -1.54 16 2 C -0.13 -1.93 9.85 25.65 0.25 -1.68 16 3 C -0.15 -2.64 5.74 -16.49 -0.09 -2.74 16 4 C -0.11 -1.43 9.92 71.24 0.71 -0.72 16 5 C 0.09 2.09 5.52 71.24 0.39 2.48 16 6 O -0.35 -8.60 10.10 -51.39 -0.52 -9.12 16 7 C 0.46 13.41 7.95 71.24 0.57 13.98 16 8 O -0.54 -20.26 15.78 21.96 0.35 -19.92 16 9 C -0.06 -1.49 5.94 29.10 0.17 -1.32 16 10 C -0.04 -1.29 4.37 -19.88 -0.09 -1.38 16 11 C -0.18 -5.63 9.70 22.30 0.22 -5.41 16 12 C -0.07 -2.57 10.04 22.26 0.22 -2.34 16 13 C -0.24 -10.99 9.17 22.39 0.21 -10.79 16 14 C 0.11 5.82 6.65 22.58 0.15 5.97 16 15 O -0.23 -14.59 9.76 -22.77 -0.22 -14.81 16 16 C -0.42 -24.91 9.49 67.92 0.64 -24.27 16 17 H 0.10 5.52 5.21 -2.91 -0.02 5.51 16 18 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 19 N -0.92 -57.81 13.67 21.61 0.30 -57.52 16 20 Si 1.02 43.69 29.55 68.60 2.03 45.72 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 C -0.19 -8.49 9.65 22.39 0.22 -8.27 16 25 H 0.06 1.04 7.60 -2.39 -0.02 1.02 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.05 7.91 -2.38 -0.02 1.03 16 28 H 0.14 1.41 8.02 -2.91 -0.02 1.39 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 0.76 8.04 -2.39 -0.02 0.74 16 31 H 0.06 0.82 8.12 -2.39 -0.02 0.80 16 32 H 0.07 1.71 5.78 -2.39 -0.01 1.70 16 33 H 0.07 1.69 8.13 -2.39 -0.02 1.68 16 34 H 0.16 2.44 8.08 -2.39 -0.02 2.42 16 35 H 0.13 2.75 8.08 -2.39 -0.02 2.73 16 36 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 37 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 38 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16 39 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 40 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -78.29 347.70 7.62 -70.68 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 1.04 Total: 23.88 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 4.65 Total: -38.91 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.30 Total: -57.52 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -0.39 Total: -43.85 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -78.29 7.62 -70.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842847563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.588 kcal (2) G-P(sol) polarization free energy of solvation -78.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds