Wall clock time and date at job start Tue Mar 31 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30991 * 120.00241 * 2 1 4 4 C 1.50709 * 120.00198 * 178.98338 * 3 2 1 5 5 C 1.50700 * 120.00352 * 359.25566 * 3 2 1 6 6 O 1.45194 * 109.47457 * 233.74757 * 5 3 2 7 7 C 1.34232 * 117.00052 * 179.97438 * 6 5 3 8 8 O 1.20822 * 120.00105 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99944 * 179.97438 * 7 6 5 10 10 C 1.50697 * 109.47109 * 180.02562 * 9 7 6 11 11 C 1.38305 * 119.92967 * 269.72604 * 10 9 7 12 12 C 1.38101 * 120.06663 * 179.72174 * 11 10 9 13 13 C 1.38887 * 119.92991 * 0.57462 * 12 11 10 14 14 O 1.35749 * 120.06703 * 179.67608 * 13 12 11 15 15 C 1.34832 * 116.99756 * 185.52413 * 14 13 12 16 16 H 1.07996 * 119.99955 * 5.32298 * 15 14 13 17 17 C 1.38653 * 119.99894 * 185.32990 * 15 14 13 18 18 N 1.31555 * 120.00017 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00085 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47076 * 90.00471 * 19 17 15 21 21 H 1.48503 * 109.47432 * 210.00357 * 19 17 15 22 22 H 1.48506 * 109.47352 * 330.00604 * 19 17 15 23 23 C 1.38884 * 119.85965 * 359.70158 * 13 12 11 24 24 C 1.38095 * 119.93304 * 0.02562 * 23 13 12 25 25 H 1.09000 * 109.47402 * 300.00462 * 1 2 3 26 26 H 1.09006 * 109.46793 * 60.00139 * 1 2 3 27 27 H 1.08994 * 109.47669 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99493 * 180.02562 * 2 1 3 29 29 H 1.08990 * 109.46993 * 89.99531 * 4 3 2 30 30 H 1.08996 * 109.47274 * 210.00087 * 4 3 2 31 31 H 1.09007 * 109.46546 * 329.99762 * 4 3 2 32 32 H 1.09002 * 109.46689 * 353.75207 * 5 3 2 33 33 H 1.09005 * 109.47111 * 113.74119 * 5 3 2 34 34 H 1.08997 * 109.47533 * 300.00193 * 9 7 6 35 35 H 1.09005 * 109.47303 * 60.00157 * 9 7 6 36 36 H 1.08003 * 119.96558 * 359.97438 * 11 10 9 37 37 H 1.07999 * 120.03811 * 180.27697 * 12 11 10 38 38 H 0.96999 * 120.00196 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.02926 * 179.97438 * 23 13 12 40 40 H 1.08000 * 119.96616 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 3.6689 1.1345 0.0232 5 6 1.4087 2.4395 -0.0170 6 8 1.8802 3.2562 -1.1209 7 6 1.3063 4.4596 -1.2773 8 8 0.4390 4.8187 -0.5166 9 6 1.7445 5.3631 -2.4010 10 6 0.9511 6.6434 -2.3547 11 6 -0.2382 6.7438 -3.0534 12 6 -0.9705 7.9138 -3.0083 13 6 -0.5055 8.9943 -2.2699 14 8 -1.2198 10.1480 -2.2290 15 6 -0.6578 11.1935 -1.5895 16 1 0.3520 11.1175 -1.2141 17 6 -1.3763 12.3662 -1.4137 18 7 -0.8278 13.3865 -0.7902 19 14 -3.1227 12.4979 -2.0634 20 1 -4.0755 12.0499 -1.0162 21 1 -3.4115 13.9092 -2.4243 22 1 -3.2695 11.6394 -3.2662 23 6 0.6920 8.8922 -1.5740 24 6 1.4168 7.7176 -1.6185 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 2.0469 -0.9354 -0.0004 29 1 4.0479 1.1253 -0.9987 30 1 4.0244 2.0290 0.5346 31 1 4.0242 0.2490 0.5505 32 1 0.3437 2.2427 -0.1395 33 1 1.5749 2.9672 0.9223 34 1 2.8053 5.5893 -2.2928 35 1 1.5750 4.8644 -3.3554 36 1 -0.5966 5.9050 -3.6317 37 1 -1.9014 7.9902 -3.5506 38 1 -1.3303 14.2071 -0.6675 39 1 1.0564 9.7308 -0.9992 40 1 2.3479 7.6374 -1.0772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842848647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:55 Heat of formation + Delta-G solvation = -81.057670 kcal Electronic energy + Delta-G solvation = -21785.727430 eV Core-core repulsion = 18338.649361 eV Total energy + Delta-G solvation = -3447.078069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48512 -39.15122 -37.56496 -36.67027 -35.63918 -32.55780 -31.72969 -30.49761 -30.26629 -28.00093 -26.60328 -24.99028 -24.52880 -22.14251 -21.61391 -20.13400 -18.57443 -17.91667 -17.60169 -17.27878 -16.66833 -15.96041 -15.18022 -14.79262 -14.74495 -14.42530 -14.05655 -13.99791 -13.81101 -13.55301 -13.16624 -13.07602 -12.78976 -12.70272 -12.45676 -12.39269 -12.22277 -11.82244 -11.70900 -11.33803 -11.29383 -10.98592 -10.77201 -10.69801 -10.67667 -10.31463 -10.15576 -9.42124 -9.16052 -8.87568 -8.26446 -7.35443 -6.42918 -4.09243 1.55574 2.08528 2.13635 2.35457 2.99193 3.22066 3.26199 3.40281 4.23195 4.34982 4.49147 4.54597 4.83784 4.88641 4.91221 4.95711 5.08078 5.11322 5.18875 5.26796 5.27431 5.35093 5.46843 5.52824 5.57683 5.62371 5.64454 5.72900 5.75360 6.11614 6.20115 6.30358 6.42425 6.48007 6.55984 6.77113 7.00267 7.18614 7.27805 7.58884 7.78386 7.89672 8.02355 8.92252 9.54362 10.64637 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033147 B = 0.002680 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.507902 B =10447.082826 C =10655.506404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.145 4.145 3 C -0.134 4.134 4 C -0.112 4.112 5 C 0.097 3.903 6 O -0.358 6.358 7 C 0.454 3.546 8 O -0.492 6.492 9 C -0.051 4.051 10 C -0.175 4.175 11 C -0.059 4.059 12 C -0.192 4.192 13 C 0.164 3.836 14 O -0.215 6.215 15 C -0.389 4.389 16 H 0.107 0.893 17 C 0.063 3.937 18 N -0.878 5.878 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.220 4.220 24 C -0.055 4.055 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.280 0.720 39 H 0.134 0.866 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.500 -23.759 -1.172 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C -0.134 4.134 4 C -0.169 4.169 5 C 0.024 3.976 6 O -0.276 6.276 7 C 0.296 3.704 8 O -0.378 6.378 9 C -0.089 4.089 10 C -0.176 4.176 11 C -0.077 4.077 12 C -0.211 4.211 13 C 0.112 3.888 14 O -0.120 6.120 15 C -0.465 4.465 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.516 5.516 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.239 4.239 24 C -0.073 4.073 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.090 0.910 39 H 0.152 0.848 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.971 -23.354 -0.918 24.123 hybrid contribution -0.690 0.213 0.147 0.737 sum 5.281 -23.141 -0.771 23.749 Atomic orbital electron populations 1.20940 0.93066 1.02621 1.02334 1.22748 0.96266 0.97241 1.00081 1.21377 0.96492 0.93043 1.02533 1.20728 0.91346 1.02290 1.02492 1.21980 0.98176 0.88501 0.88931 1.86534 1.62280 1.28888 1.49902 1.24190 0.79844 0.80215 0.86157 1.90706 1.29516 1.73619 1.43921 1.20109 1.01439 0.91953 0.95382 1.18712 0.98463 0.94088 1.06308 1.20427 0.93344 0.96173 0.97755 1.20151 1.02400 0.92931 1.05597 1.19158 0.90580 0.86289 0.92772 1.83587 1.43388 1.17384 1.67645 1.20777 1.00755 0.89266 1.35686 0.87599 1.24478 0.99753 0.94074 0.95708 1.69645 1.38320 1.03929 1.39707 0.86175 0.82819 0.77458 0.80425 1.19877 1.20742 1.18307 1.21235 0.97412 0.99512 1.05732 1.20593 0.98285 0.92361 0.96074 0.91367 0.91293 0.91742 0.86455 0.91014 0.91711 0.91929 0.90283 0.90558 0.87669 0.87701 0.87008 0.86399 0.91014 0.84821 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 8.66 36.01 0.31 -0.63 16 2 C -0.15 -1.11 9.85 -36.02 -0.35 -1.46 16 3 C -0.13 -1.20 5.76 -101.06 -0.58 -1.78 16 4 C -0.11 -0.84 9.88 36.01 0.36 -0.49 16 5 C 0.10 1.07 5.50 36.01 0.20 1.27 16 6 O -0.36 -4.43 10.06 -39.26 -0.39 -4.82 16 7 C 0.45 6.45 7.95 36.00 0.29 6.74 16 8 O -0.49 -8.86 15.78 -18.75 -0.30 -9.16 16 9 C -0.05 -0.64 5.94 -29.04 -0.17 -0.81 16 10 C -0.17 -2.91 4.38 -104.57 -0.46 -3.37 16 11 C -0.06 -1.01 9.69 -39.61 -0.38 -1.40 16 12 C -0.19 -3.86 9.99 -39.39 -0.39 -4.26 16 13 C 0.16 3.86 6.65 -39.10 -0.26 3.60 16 14 O -0.22 -5.75 8.59 0.04 0.00 -5.75 16 15 C -0.39 -11.05 9.90 30.89 0.31 -10.74 16 16 H 0.11 3.06 5.52 -52.49 -0.29 2.77 16 17 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 18 N -0.88 -25.47 13.96 55.48 0.77 -24.69 16 19 Si 0.91 21.82 28.62 -169.99 -4.86 16.95 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.22 -4.82 9.14 -39.39 -0.36 -5.18 16 24 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16 25 H 0.07 0.49 7.90 -51.93 -0.41 0.08 16 26 H 0.07 0.53 7.60 -51.93 -0.39 0.13 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.12 0.71 8.04 -52.48 -0.42 0.29 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.06 0.38 8.06 -51.93 -0.42 -0.04 16 32 H 0.08 0.87 5.80 -51.93 -0.30 0.57 16 33 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.11 1.07 8.08 -51.93 -0.42 0.66 16 35 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 37 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.13 3.07 5.71 -52.49 -0.30 2.77 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 346.62 15.07 5.22 5.22 Total: -1.00 -31.72 346.62 -7.01 -38.73 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.47 Total: 1.72 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -1.99 Total: -18.21 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.77 Total: -24.69 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.69 Total: -19.72 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.72 -7.01 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842848647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.324 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds