Wall clock time and date at job start Tue Mar 31 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30991 * 120.00241 * 2 1 4 4 C 1.50709 * 120.00198 * 178.98338 * 3 2 1 5 5 C 1.50700 * 120.00352 * 359.25566 * 3 2 1 6 6 O 1.45194 * 109.47457 * 233.74757 * 5 3 2 7 7 C 1.34232 * 117.00052 * 179.97438 * 6 5 3 8 8 O 1.20822 * 120.00105 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99944 * 179.97438 * 7 6 5 10 10 C 1.50697 * 109.47109 * 180.02562 * 9 7 6 11 11 C 1.38305 * 119.92967 * 269.72604 * 10 9 7 12 12 C 1.38101 * 120.06663 * 179.72174 * 11 10 9 13 13 C 1.38887 * 119.92991 * 0.57462 * 12 11 10 14 14 O 1.35749 * 120.06703 * 179.67608 * 13 12 11 15 15 C 1.34832 * 116.99756 * 185.52413 * 14 13 12 16 16 H 1.07996 * 119.99955 * 5.32298 * 15 14 13 17 17 C 1.38653 * 119.99894 * 185.32990 * 15 14 13 18 18 N 1.31555 * 120.00017 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00085 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47076 * 90.00471 * 19 17 15 21 21 H 1.48503 * 109.47432 * 210.00357 * 19 17 15 22 22 H 1.48506 * 109.47352 * 330.00604 * 19 17 15 23 23 C 1.38884 * 119.85965 * 359.70158 * 13 12 11 24 24 C 1.38095 * 119.93304 * 0.02562 * 23 13 12 25 25 H 1.09000 * 109.47402 * 300.00462 * 1 2 3 26 26 H 1.09006 * 109.46793 * 60.00139 * 1 2 3 27 27 H 1.08994 * 109.47669 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99493 * 180.02562 * 2 1 3 29 29 H 1.08990 * 109.46993 * 89.99531 * 4 3 2 30 30 H 1.08996 * 109.47274 * 210.00087 * 4 3 2 31 31 H 1.09007 * 109.46546 * 329.99762 * 4 3 2 32 32 H 1.09002 * 109.46689 * 353.75207 * 5 3 2 33 33 H 1.09005 * 109.47111 * 113.74119 * 5 3 2 34 34 H 1.08997 * 109.47533 * 300.00193 * 9 7 6 35 35 H 1.09005 * 109.47303 * 60.00157 * 9 7 6 36 36 H 1.08003 * 119.96558 * 359.97438 * 11 10 9 37 37 H 1.07999 * 120.03811 * 180.27697 * 12 11 10 38 38 H 0.96999 * 120.00196 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.02926 * 179.97438 * 23 13 12 40 40 H 1.08000 * 119.96616 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 3.6689 1.1345 0.0232 5 6 1.4087 2.4395 -0.0170 6 8 1.8802 3.2562 -1.1209 7 6 1.3063 4.4596 -1.2773 8 8 0.4390 4.8187 -0.5166 9 6 1.7445 5.3631 -2.4010 10 6 0.9511 6.6434 -2.3547 11 6 -0.2382 6.7438 -3.0534 12 6 -0.9705 7.9138 -3.0083 13 6 -0.5055 8.9943 -2.2699 14 8 -1.2198 10.1480 -2.2290 15 6 -0.6578 11.1935 -1.5895 16 1 0.3520 11.1175 -1.2141 17 6 -1.3763 12.3662 -1.4137 18 7 -0.8278 13.3865 -0.7902 19 14 -3.1227 12.4979 -2.0634 20 1 -4.0755 12.0499 -1.0162 21 1 -3.4115 13.9092 -2.4243 22 1 -3.2695 11.6394 -3.2662 23 6 0.6920 8.8922 -1.5740 24 6 1.4168 7.7176 -1.6185 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 2.0469 -0.9354 -0.0004 29 1 4.0479 1.1253 -0.9987 30 1 4.0244 2.0290 0.5346 31 1 4.0242 0.2490 0.5505 32 1 0.3437 2.2427 -0.1395 33 1 1.5749 2.9672 0.9223 34 1 2.8053 5.5893 -2.2928 35 1 1.5750 4.8644 -3.3554 36 1 -0.5966 5.9050 -3.6317 37 1 -1.9014 7.9902 -3.5506 38 1 -1.3303 14.2071 -0.6675 39 1 1.0564 9.7308 -0.9992 40 1 2.3479 7.6374 -1.0772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842848647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:54 Heat of formation + Delta-G solvation = -98.179509 kcal Electronic energy + Delta-G solvation = -21786.469888 eV Core-core repulsion = 18338.649361 eV Total energy + Delta-G solvation = -3447.820527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62358 -40.80380 -38.77214 -37.98980 -36.57216 -34.54594 -33.17498 -31.84298 -31.07696 -29.18312 -27.88387 -26.72503 -25.17361 -23.74568 -22.96529 -21.48572 -19.85267 -19.32774 -19.09330 -18.67529 -17.68451 -17.01190 -16.67302 -16.24769 -15.91476 -15.71304 -15.56151 -15.25403 -15.11342 -14.65971 -14.41388 -14.31026 -14.10069 -13.83883 -13.78185 -13.61827 -13.06125 -12.94564 -12.89362 -12.58732 -12.44360 -12.40008 -12.36833 -12.02414 -11.93751 -11.60461 -11.47702 -11.32163 -10.91737 -9.82137 -9.78969 -9.04936 -8.51948 -6.24560 0.49554 0.55799 0.94205 1.25336 1.30018 1.34368 1.50831 1.99154 2.26826 2.76186 3.08760 3.10072 3.66835 3.76450 3.87303 3.99818 4.05353 4.14027 4.22821 4.38039 4.39427 4.41104 4.54047 4.66231 4.71183 4.73318 4.77888 4.88897 4.92786 4.95099 5.07672 5.21316 5.21762 5.33300 5.43622 5.53186 5.63060 5.68739 5.76557 5.85235 5.88658 6.21415 6.81006 6.82235 7.56124 8.59753 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033147 B = 0.002680 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.507902 B =10447.082826 C =10655.506404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C -0.154 4.154 4 C -0.110 4.110 5 C 0.094 3.906 6 O -0.350 6.350 7 C 0.460 3.540 8 O -0.538 6.538 9 C -0.050 4.050 10 C -0.151 4.151 11 C -0.055 4.055 12 C -0.193 4.193 13 C 0.122 3.878 14 O -0.244 6.244 15 C -0.400 4.400 16 H 0.080 0.920 17 C 0.009 3.991 18 N -0.922 5.922 19 Si 0.971 3.029 20 H -0.268 1.268 21 H -0.265 1.265 22 H -0.261 1.261 23 C -0.239 4.239 24 C -0.060 4.060 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.130 0.870 38 H 0.285 0.715 39 H 0.108 0.892 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.869 -27.585 -2.618 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C -0.154 4.154 4 C -0.167 4.167 5 C 0.021 3.979 6 O -0.267 6.267 7 C 0.305 3.695 8 O -0.427 6.427 9 C -0.087 4.087 10 C -0.151 4.151 11 C -0.072 4.072 12 C -0.212 4.212 13 C 0.073 3.927 14 O -0.151 6.151 15 C -0.476 4.476 16 H 0.098 0.902 17 C -0.189 4.189 18 N -0.563 5.563 19 Si 0.793 3.207 20 H -0.194 1.194 21 H -0.189 1.189 22 H -0.185 1.185 23 C -0.258 4.258 24 C -0.078 4.078 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.156 0.844 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.174 0.826 37 H 0.148 0.852 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.380 -27.239 -2.379 28.077 hybrid contribution -0.620 0.986 0.589 1.305 sum 5.760 -26.253 -1.791 26.937 Atomic orbital electron populations 1.20996 0.92970 1.03596 1.01844 1.23012 0.96524 0.97637 0.97873 1.21409 0.97207 0.92237 1.04542 1.20733 0.90364 1.02779 1.02779 1.22118 0.98537 0.89229 0.88062 1.86526 1.61730 1.28198 1.50246 1.24397 0.78861 0.80590 0.85685 1.90716 1.31696 1.74596 1.45732 1.20255 1.02277 0.89507 0.96611 1.19244 0.97876 0.95105 1.02923 1.20976 0.92825 0.96112 0.97324 1.20510 1.03225 0.92801 1.04706 1.19726 0.91553 0.86621 0.94799 1.83525 1.44199 1.18041 1.69375 1.20705 1.00199 0.90656 1.36063 0.90231 1.25300 1.03842 0.93613 0.96145 1.69728 1.40083 1.04688 1.41816 0.85211 0.77782 0.78080 0.79601 1.19350 1.18931 1.18524 1.21257 0.97952 1.00422 1.06176 1.20937 0.98992 0.91545 0.96356 0.91733 0.91906 0.90089 0.84392 0.90803 0.92402 0.90337 0.90559 0.91483 0.84515 0.83690 0.82593 0.85165 0.90521 0.87420 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.66 71.24 0.62 -1.03 16 2 C -0.13 -1.65 9.85 25.66 0.25 -1.39 16 3 C -0.15 -2.38 5.76 -16.48 -0.09 -2.47 16 4 C -0.11 -1.38 9.88 71.24 0.70 -0.67 16 5 C 0.09 1.90 5.50 71.24 0.39 2.29 16 6 O -0.35 -7.62 10.06 -51.44 -0.52 -8.14 16 7 C 0.46 11.59 7.95 71.24 0.57 12.15 16 8 O -0.54 -18.39 15.78 21.98 0.35 -18.05 16 9 C -0.05 -0.99 5.94 29.10 0.17 -0.81 16 10 C -0.15 -4.51 4.38 -19.83 -0.09 -4.60 16 11 C -0.05 -1.70 9.69 22.25 0.22 -1.48 16 12 C -0.19 -7.59 9.99 22.39 0.22 -7.37 16 13 C 0.12 5.91 6.65 22.58 0.15 6.06 16 14 O -0.24 -13.62 8.59 -22.76 -0.20 -13.82 16 15 C -0.40 -24.14 9.90 67.92 0.67 -23.46 16 16 H 0.08 5.03 5.52 -2.91 -0.02 5.02 16 17 C 0.01 0.56 5.49 84.83 0.47 1.02 16 18 N -0.92 -55.98 13.96 21.61 0.30 -55.68 16 19 Si 0.97 46.29 28.62 68.60 1.96 48.25 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.26 -12.35 7.11 99.48 0.71 -11.65 16 23 C -0.24 -10.89 9.14 22.39 0.20 -10.68 16 24 C -0.06 -2.15 9.69 22.25 0.22 -1.93 16 25 H 0.06 0.83 7.90 -2.39 -0.02 0.81 16 26 H 0.06 0.84 7.60 -2.38 -0.02 0.82 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.14 1.15 8.04 -2.91 -0.02 1.13 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.79 8.12 -2.39 -0.02 0.77 16 31 H 0.08 0.72 8.06 -2.38 -0.02 0.70 16 32 H 0.08 1.58 5.80 -2.39 -0.01 1.56 16 33 H 0.07 1.46 8.13 -2.38 -0.02 1.44 16 34 H 0.14 2.01 8.08 -2.39 -0.02 1.99 16 35 H 0.15 1.88 8.08 -2.38 -0.02 1.86 16 36 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 38 H 0.29 15.83 8.31 -92.71 -0.77 15.06 16 39 H 0.11 5.39 5.71 -2.91 -0.02 5.38 16 40 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -73.54 346.62 7.61 -65.94 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 1.04 Total: 15.86 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 4.67 Total: -34.38 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.30 Total: -55.68 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.37 Total: -40.00 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.96 Total: 48.25 kcal Total: -73.54 7.61 -65.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842848647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.243 kcal (2) G-P(sol) polarization free energy of solvation -73.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds