Wall clock time and date at job start Tue Mar 31 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.30998 * 119.99856 * 2 1 4 4 C 1.50695 * 120.00144 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99496 * 179.97438 * 3 2 1 6 6 O 1.45190 * 109.47527 * 359.97438 * 5 3 2 7 7 C 1.34226 * 117.00337 * 179.97438 * 6 5 3 8 8 O 1.20829 * 119.99942 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.00234 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.46882 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93116 * 269.72639 * 10 9 7 12 12 C 1.38105 * 120.07117 * 179.72921 * 11 10 9 13 13 C 1.38887 * 119.92582 * 0.56652 * 12 11 10 14 14 O 1.35754 * 120.06405 * 179.68325 * 13 12 11 15 15 C 1.34835 * 116.99295 * 174.49218 * 14 13 12 16 16 H 1.07994 * 120.00123 * 5.04897 * 15 14 13 17 17 C 1.38656 * 119.99534 * 185.05651 * 15 14 13 18 18 N 1.31556 * 119.99859 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99888 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47196 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46959 * 120.00240 * 19 17 15 22 22 H 1.48498 * 109.47533 * 239.99802 * 19 17 15 23 23 C 1.38875 * 119.86281 * 359.70695 * 13 12 11 24 24 C 1.38101 * 119.93077 * 0.02562 * 23 13 12 25 25 H 1.08994 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46846 * 59.99969 * 1 2 3 27 27 H 1.08999 * 109.46826 * 300.00278 * 1 2 3 28 28 H 1.08003 * 119.99717 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47169 * 90.00477 * 4 3 2 30 30 H 1.09000 * 109.47266 * 210.00083 * 4 3 2 31 31 H 1.09000 * 109.47350 * 330.00461 * 4 3 2 32 32 H 1.08998 * 109.46629 * 119.99976 * 5 3 2 33 33 H 1.09001 * 109.46773 * 239.99165 * 5 3 2 34 34 H 1.09002 * 109.46882 * 300.00296 * 9 7 6 35 35 H 1.08996 * 109.46912 * 60.00421 * 9 7 6 36 36 H 1.08000 * 119.96572 * 359.97438 * 11 10 9 37 37 H 1.07995 * 120.03543 * 180.27004 * 12 11 10 38 38 H 0.97003 * 120.00107 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.03298 * 179.97438 * 23 13 12 40 40 H 1.08001 * 119.96206 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4086 2.4395 -0.0006 5 6 3.6691 1.1344 0.0006 6 8 4.1531 -0.2345 0.0017 7 6 5.4837 -0.4104 0.0018 8 8 6.2198 0.5478 0.0014 9 6 6.0598 -1.8030 0.0035 10 6 7.5646 -1.7241 0.0039 11 6 8.2544 -1.6950 -1.1944 12 6 9.6333 -1.6171 -1.1975 13 6 10.3278 -1.5798 0.0047 14 8 11.6835 -1.5097 0.0049 15 6 12.2884 -1.3616 1.2008 16 1 11.7037 -1.3859 2.1084 17 6 13.6613 -1.1778 1.2652 18 7 14.3734 -1.1475 0.1595 19 14 14.4993 -0.9719 2.9219 20 1 13.4835 -1.0431 4.0027 21 1 15.4978 -2.0550 3.1095 22 1 15.1830 0.3454 2.9705 23 6 9.6325 -1.6149 1.2063 24 6 8.2534 -1.6873 1.2026 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 2.0470 -0.9354 0.0004 29 1 1.2266 2.7545 1.0269 30 1 1.9978 3.1991 -0.5144 31 1 0.4563 2.3091 -0.5147 32 1 4.0327 1.6480 -0.8894 33 1 4.0320 1.6485 0.8905 34 1 5.7238 -2.3340 0.8942 35 1 5.7238 -2.3362 -0.8858 36 1 7.7140 -1.7293 -2.1289 37 1 10.1711 -1.5900 -2.1336 38 1 15.3339 -1.0193 0.2045 39 1 10.1699 -1.5865 2.1427 40 1 7.7122 -1.7150 2.1368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842848649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:57 Heat of formation + Delta-G solvation = -83.334529 kcal Electronic energy + Delta-G solvation = -21653.970203 eV Core-core repulsion = 18206.793402 eV Total energy + Delta-G solvation = -3447.176801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.46087 -38.99564 -37.49490 -36.52787 -35.60805 -32.52221 -31.55415 -30.20080 -30.14740 -27.96649 -26.61258 -25.18775 -24.42204 -22.00230 -21.67746 -20.13564 -18.21563 -17.99869 -17.43958 -17.03069 -16.58716 -16.49351 -14.92126 -14.78803 -14.59615 -14.42356 -14.30486 -13.79170 -13.64882 -13.54139 -13.30687 -12.86380 -12.79891 -12.72029 -12.51703 -12.33424 -11.90691 -11.55348 -11.53107 -11.31338 -11.24144 -10.90410 -10.86838 -10.79110 -10.61945 -10.42405 -10.26628 -9.33591 -9.00520 -8.83822 -8.17499 -7.20512 -6.45548 -4.04024 1.86732 2.11158 2.23458 2.38952 2.82856 3.12941 3.14496 3.19797 3.96669 4.40894 4.53381 4.75434 4.94402 5.04322 5.06586 5.08663 5.09841 5.17056 5.22513 5.25580 5.30216 5.38733 5.44728 5.52617 5.62829 5.64742 5.70870 5.73430 5.82693 6.20112 6.37553 6.39125 6.41442 6.67290 6.70697 6.89543 7.04337 7.21777 7.33877 7.43451 7.80895 7.93038 7.99718 9.00133 9.69802 10.72442 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034596 B = 0.002546 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.156077 B =10995.285258 C =11265.665137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 C -0.152 4.152 4 C -0.113 4.113 5 C 0.105 3.895 6 O -0.363 6.363 7 C 0.455 3.545 8 O -0.491 6.491 9 C -0.049 4.049 10 C -0.184 4.184 11 C -0.057 4.057 12 C -0.192 4.192 13 C 0.159 3.841 14 O -0.176 6.176 15 C -0.391 4.391 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.862 5.862 19 Si 0.942 3.058 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.233 4.233 24 C -0.053 4.053 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.270 0.730 39 H 0.128 0.872 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.110 1.469 0.497 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.170 4.170 5 C 0.032 3.968 6 O -0.281 6.281 7 C 0.297 3.703 8 O -0.376 6.376 9 C -0.087 4.087 10 C -0.185 4.185 11 C -0.075 4.075 12 C -0.211 4.211 13 C 0.105 3.895 14 O -0.079 6.079 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.496 5.496 19 Si 0.767 3.233 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.252 4.252 24 C -0.071 4.071 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.146 0.854 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -23.469 1.819 0.254 23.541 hybrid contribution 0.521 0.333 0.882 1.078 sum -22.948 2.153 1.136 23.076 Atomic orbital electron populations 1.20876 0.93204 1.02285 1.01707 1.22758 0.95792 0.98369 0.99276 1.21418 0.93079 0.96260 1.04414 1.20745 0.99702 0.94197 1.02349 1.21649 0.91545 0.80896 1.02723 1.86447 1.25444 1.31414 1.84779 1.24229 0.79730 0.93645 0.72710 1.90711 1.60127 1.42993 1.43742 1.20094 0.93470 0.89826 1.05279 1.18637 0.91545 1.14301 0.93984 1.20426 0.93198 0.97576 0.96285 1.20165 0.93308 1.11336 0.96284 1.19405 0.84871 0.91942 0.93290 1.83980 1.13046 1.77817 1.33072 1.21394 0.90916 1.51316 0.83114 0.88953 1.25308 0.95457 0.96479 0.99338 1.70050 1.07081 1.45538 1.26965 0.85632 0.79312 0.78305 0.80090 1.19083 1.20129 1.20120 1.21111 0.94089 1.11546 0.98483 1.20534 0.93719 0.96748 0.96135 0.92070 0.91615 0.91738 0.86004 0.91223 0.91784 0.91068 0.90433 0.90441 0.87831 0.87786 0.87189 0.86394 0.92042 0.85444 0.87640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 8.88 36.01 0.32 -0.47 16 2 C -0.14 -1.26 9.63 -36.02 -0.35 -1.61 16 3 C -0.15 -1.39 6.05 -101.07 -0.61 -2.00 16 4 C -0.11 -0.77 9.54 36.00 0.34 -0.43 16 5 C 0.11 1.18 5.87 36.01 0.21 1.39 16 6 O -0.36 -4.55 8.61 -39.25 -0.34 -4.89 16 7 C 0.45 6.65 7.95 36.01 0.29 6.94 16 8 O -0.49 -9.10 15.78 -18.75 -0.30 -9.40 16 9 C -0.05 -0.64 5.94 -29.03 -0.17 -0.81 16 10 C -0.18 -3.19 4.38 -104.58 -0.46 -3.64 16 11 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 12 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 13 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 14 O -0.18 -5.10 9.76 0.02 0.00 -5.10 16 15 C -0.39 -11.07 9.49 30.89 0.29 -10.77 16 16 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 19 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 C -0.23 -5.19 9.17 -39.40 -0.36 -5.55 16 24 C -0.05 -1.00 9.69 -39.61 -0.38 -1.38 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.37 7.36 -51.93 -0.38 -0.01 16 27 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.12 1.16 6.82 -52.48 -0.36 0.80 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.07 0.41 6.44 -51.93 -0.33 0.07 16 32 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 34 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 35 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -32.86 345.97 -7.12 -39.97 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.42 Total: 2.87 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -2.01 Total: -19.67 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.76 Total: -24.71 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.63 Total: -19.38 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.86 -7.12 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842848649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.363 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds