Wall clock time and date at job start Tue Mar 31 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.30998 * 119.99856 * 2 1 4 4 C 1.50695 * 120.00144 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99496 * 179.97438 * 3 2 1 6 6 O 1.45190 * 109.47527 * 359.97438 * 5 3 2 7 7 C 1.34226 * 117.00337 * 179.97438 * 6 5 3 8 8 O 1.20829 * 119.99942 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.00234 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.46882 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93116 * 269.72639 * 10 9 7 12 12 C 1.38105 * 120.07117 * 179.72921 * 11 10 9 13 13 C 1.38887 * 119.92582 * 0.56652 * 12 11 10 14 14 O 1.35754 * 120.06405 * 179.68325 * 13 12 11 15 15 C 1.34835 * 116.99295 * 174.49218 * 14 13 12 16 16 H 1.07994 * 120.00123 * 5.04897 * 15 14 13 17 17 C 1.38656 * 119.99534 * 185.05651 * 15 14 13 18 18 N 1.31556 * 119.99859 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99888 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47196 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46959 * 120.00240 * 19 17 15 22 22 H 1.48498 * 109.47533 * 239.99802 * 19 17 15 23 23 C 1.38875 * 119.86281 * 359.70695 * 13 12 11 24 24 C 1.38101 * 119.93077 * 0.02562 * 23 13 12 25 25 H 1.08994 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46846 * 59.99969 * 1 2 3 27 27 H 1.08999 * 109.46826 * 300.00278 * 1 2 3 28 28 H 1.08003 * 119.99717 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47169 * 90.00477 * 4 3 2 30 30 H 1.09000 * 109.47266 * 210.00083 * 4 3 2 31 31 H 1.09000 * 109.47350 * 330.00461 * 4 3 2 32 32 H 1.08998 * 109.46629 * 119.99976 * 5 3 2 33 33 H 1.09001 * 109.46773 * 239.99165 * 5 3 2 34 34 H 1.09002 * 109.46882 * 300.00296 * 9 7 6 35 35 H 1.08996 * 109.46912 * 60.00421 * 9 7 6 36 36 H 1.08000 * 119.96572 * 359.97438 * 11 10 9 37 37 H 1.07995 * 120.03543 * 180.27004 * 12 11 10 38 38 H 0.97003 * 120.00107 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.03298 * 179.97438 * 23 13 12 40 40 H 1.08001 * 119.96206 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4086 2.4395 -0.0006 5 6 3.6691 1.1344 0.0006 6 8 4.1531 -0.2345 0.0017 7 6 5.4837 -0.4104 0.0018 8 8 6.2198 0.5478 0.0014 9 6 6.0598 -1.8030 0.0035 10 6 7.5646 -1.7241 0.0039 11 6 8.2544 -1.6950 -1.1944 12 6 9.6333 -1.6171 -1.1975 13 6 10.3278 -1.5798 0.0047 14 8 11.6835 -1.5097 0.0049 15 6 12.2884 -1.3616 1.2008 16 1 11.7037 -1.3859 2.1084 17 6 13.6613 -1.1778 1.2652 18 7 14.3734 -1.1475 0.1595 19 14 14.4993 -0.9719 2.9219 20 1 13.4835 -1.0431 4.0027 21 1 15.4978 -2.0550 3.1095 22 1 15.1830 0.3454 2.9705 23 6 9.6325 -1.6149 1.2063 24 6 8.2534 -1.6873 1.2026 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 2.0470 -0.9354 0.0004 29 1 1.2266 2.7545 1.0269 30 1 1.9978 3.1991 -0.5144 31 1 0.4563 2.3091 -0.5147 32 1 4.0327 1.6480 -0.8894 33 1 4.0320 1.6485 0.8905 34 1 5.7238 -2.3340 0.8942 35 1 5.7238 -2.3362 -0.8858 36 1 7.7140 -1.7293 -2.1289 37 1 10.1711 -1.5900 -2.1336 38 1 15.3339 -1.0193 0.2045 39 1 10.1699 -1.5865 2.1427 40 1 7.7122 -1.7150 2.1368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842848649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:57 Heat of formation + Delta-G solvation = -101.712242 kcal Electronic energy + Delta-G solvation = -21654.767120 eV Core-core repulsion = 18206.793402 eV Total energy + Delta-G solvation = -3447.973718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.63119 -40.70065 -38.70510 -37.94928 -36.54718 -34.43208 -33.05687 -31.81720 -30.84492 -28.94726 -27.93099 -26.99727 -25.14583 -23.67412 -23.06072 -21.52732 -19.87404 -19.03380 -18.87119 -18.46950 -17.65155 -17.48971 -16.44057 -16.36707 -15.99986 -15.67860 -15.48383 -15.31616 -15.04558 -14.56380 -14.37629 -14.26867 -14.04599 -13.73046 -13.61777 -13.33251 -13.00198 -12.89228 -12.81942 -12.54370 -12.38097 -12.30445 -12.18124 -12.10765 -11.90864 -11.86282 -11.50777 -11.20152 -10.81494 -9.79891 -9.66141 -8.96930 -8.49108 -6.17347 0.56289 0.58601 1.20060 1.25172 1.33715 1.41446 1.52393 1.73167 2.16370 2.81672 3.14325 3.48904 3.68344 3.77762 3.98950 4.01118 4.16139 4.20503 4.24476 4.34980 4.42317 4.55310 4.55948 4.63266 4.66837 4.77263 4.77696 4.95028 4.96179 5.04008 5.12665 5.16424 5.20486 5.26126 5.42118 5.53046 5.68899 5.71570 5.74074 5.99940 6.01040 6.18920 6.80713 6.95475 7.75747 8.74347 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034596 B = 0.002546 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.156077 B =10995.285258 C =11265.665137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.145 4.145 3 C -0.163 4.163 4 C -0.112 4.112 5 C 0.101 3.899 6 O -0.353 6.353 7 C 0.462 3.538 8 O -0.538 6.538 9 C -0.047 4.047 10 C -0.159 4.159 11 C -0.053 4.053 12 C -0.206 4.206 13 C 0.116 3.884 14 O -0.231 6.231 15 C -0.414 4.414 16 H 0.101 0.899 17 C -0.024 4.024 18 N -0.920 5.920 19 Si 1.020 2.980 20 H -0.252 1.252 21 H -0.266 1.266 22 H -0.269 1.269 23 C -0.245 4.245 24 C -0.055 4.055 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.114 0.886 38 H 0.273 0.727 39 H 0.119 0.881 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.990 1.033 1.526 28.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.163 4.163 3 C -0.163 4.163 4 C -0.168 4.168 5 C 0.027 3.973 6 O -0.270 6.270 7 C 0.306 3.694 8 O -0.427 6.427 9 C -0.084 4.084 10 C -0.160 4.160 11 C -0.071 4.071 12 C -0.226 4.226 13 C 0.065 3.935 14 O -0.138 6.138 15 C -0.490 4.490 16 H 0.119 0.881 17 C -0.222 4.222 18 N -0.558 5.558 19 Si 0.839 3.161 20 H -0.175 1.175 21 H -0.191 1.191 22 H -0.194 1.194 23 C -0.264 4.264 24 C -0.073 4.073 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.168 0.832 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.137 0.863 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -27.439 1.363 1.278 27.503 hybrid contribution 1.298 0.437 0.456 1.443 sum -26.142 1.800 1.734 26.261 Atomic orbital electron populations 1.20901 0.91399 1.03092 1.02494 1.22928 0.97212 0.97763 0.98385 1.21507 0.91781 0.97595 1.05445 1.20783 0.99982 0.93013 1.03028 1.21806 0.93128 0.80010 1.02336 1.86440 1.24200 1.32277 1.84095 1.24414 0.80045 0.93583 0.71331 1.90724 1.61206 1.44567 1.46182 1.20234 0.89668 0.89515 1.08983 1.19193 0.94443 1.09499 0.92861 1.20908 0.91779 0.95730 0.98674 1.20452 0.95040 1.11707 0.95361 1.19975 0.84124 0.93945 0.95410 1.83944 1.15223 1.81009 1.33614 1.21870 0.91729 1.51796 0.83601 0.88134 1.26626 0.95833 0.95855 1.03864 1.70192 1.07520 1.48315 1.29807 0.84508 0.78184 0.78548 0.74812 1.17512 1.19064 1.19415 1.21233 0.95806 1.12014 0.97322 1.20961 0.92345 0.95494 0.98538 0.91354 0.90686 0.90936 0.86843 0.90529 0.91746 0.89687 0.90916 0.90991 0.84256 0.83995 0.83249 0.86757 0.91793 0.86305 0.84118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 8.88 71.24 0.63 -0.55 16 2 C -0.14 -2.14 9.63 25.65 0.25 -1.89 16 3 C -0.16 -2.61 6.05 -16.49 -0.10 -2.71 16 4 C -0.11 -1.25 9.54 71.23 0.68 -0.58 16 5 C 0.10 2.07 5.87 71.24 0.42 2.49 16 6 O -0.35 -7.78 8.61 -51.38 -0.44 -8.22 16 7 C 0.46 11.95 7.95 71.24 0.57 12.52 16 8 O -0.54 -18.93 15.78 21.96 0.35 -18.58 16 9 C -0.05 -0.98 5.94 29.10 0.17 -0.80 16 10 C -0.16 -4.99 4.38 -19.84 -0.09 -5.07 16 11 C -0.05 -1.82 9.69 22.25 0.22 -1.61 16 12 C -0.21 -9.12 9.99 22.39 0.22 -8.90 16 13 C 0.12 5.99 6.65 22.58 0.15 6.14 16 14 O -0.23 -14.34 9.76 -22.83 -0.22 -14.56 16 15 C -0.41 -24.74 9.49 67.92 0.64 -24.09 16 16 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16 17 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 18 N -0.92 -57.51 13.67 21.61 0.30 -57.21 16 19 Si 1.02 43.78 29.55 68.60 2.03 45.80 16 20 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 23 C -0.24 -11.06 9.17 22.39 0.21 -10.85 16 24 C -0.06 -1.97 9.69 22.25 0.22 -1.75 16 25 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 0.61 7.36 -2.39 -0.02 0.59 16 27 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 28 H 0.11 1.83 6.82 -2.91 -0.02 1.81 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16 31 H 0.08 0.72 6.44 -2.39 -0.02 0.70 16 32 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 33 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 34 H 0.14 2.05 8.08 -2.39 -0.02 2.03 16 35 H 0.14 2.02 8.08 -2.39 -0.02 2.00 16 36 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 37 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 39 H 0.12 5.45 5.64 -2.91 -0.02 5.44 16 40 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -77.56 345.97 7.70 -69.87 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 1.04 Total: 21.52 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 4.65 Total: -38.61 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.30 Total: -57.21 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.32 Total: -41.37 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -77.56 7.70 -69.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842848649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.844 kcal (2) G-P(sol) polarization free energy of solvation -77.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds