Wall clock time and date at job start Tue Mar 31 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99830 * 2 1 4 4 C 1.50698 * 109.47040 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00123 * 180.02562 * 4 3 2 6 6 C 1.33083 * 119.99900 * 0.02562 * 4 3 2 7 7 C 1.46956 * 119.99836 * 185.01976 * 6 4 3 8 8 O 1.21534 * 119.99993 * 357.02725 * 7 6 4 9 9 O 1.34801 * 120.00055 * 177.02839 * 7 6 4 10 10 C 1.45193 * 117.00338 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47321 * 180.02562 * 10 9 7 12 12 C 1.38637 * 119.74642 * 269.72542 * 11 10 9 13 13 C 1.37619 * 120.24630 * 179.72201 * 12 11 10 14 14 C 1.40715 * 119.74365 * 0.56949 * 13 12 11 15 15 C 1.41396 * 120.24359 * 179.68125 * 14 13 12 16 16 H 1.08005 * 119.99929 * 152.80406 * 15 14 13 17 17 C 1.39940 * 120.00159 * 332.80394 * 15 14 13 18 18 N 1.30826 * 120.00379 * 341.57094 * 17 15 14 19 19 Si 1.86807 * 120.00135 * 161.56236 * 17 15 14 20 20 H 1.48499 * 109.46542 * 94.97988 * 19 17 15 21 21 H 1.48494 * 109.47045 * 214.97960 * 19 17 15 22 22 H 1.48494 * 109.46949 * 334.98221 * 19 17 15 23 23 C 1.40719 * 119.51279 * 359.70522 * 14 13 12 24 24 C 1.37613 * 119.74414 * 359.97438 * 23 14 13 25 25 H 1.09005 * 109.46586 * 60.00136 * 1 2 3 26 26 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47197 * 299.99971 * 1 2 3 28 28 H 1.09000 * 109.47064 * 60.00142 * 3 2 1 29 29 H 1.09000 * 109.47550 * 299.99756 * 3 2 1 30 30 H 1.09003 * 109.46732 * 238.23219 * 5 4 3 31 31 H 1.08996 * 109.47080 * 358.22746 * 5 4 3 32 32 H 1.08995 * 109.47085 * 118.23407 * 5 4 3 33 33 H 1.08000 * 120.00059 * 5.02015 * 6 4 3 34 34 H 1.09006 * 109.47099 * 299.99793 * 10 9 7 35 35 H 1.08994 * 109.47429 * 59.99872 * 10 9 7 36 36 H 1.07997 * 119.87797 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.13074 * 180.27651 * 13 12 11 38 38 H 0.96995 * 120.00796 * 179.97438 * 18 17 15 39 39 H 1.08005 * 120.12345 * 179.97438 * 23 14 13 40 40 H 1.07994 * 119.87736 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.3667 2.4280 0.0013 6 6 4.0848 -0.0150 0.0006 7 6 5.5454 -0.1331 0.1125 8 8 6.2347 0.8670 0.1508 9 8 6.1204 -1.3508 0.1728 10 6 7.5676 -1.3917 0.2833 11 6 8.0270 -2.8259 0.3371 12 6 8.1510 -3.4630 1.5622 13 6 8.5642 -4.7743 1.6230 14 6 8.8727 -5.4647 0.4363 15 6 9.3047 -6.8101 0.4869 16 1 9.1269 -7.4663 -0.3523 17 6 9.9626 -7.2915 1.6244 18 7 10.4975 -6.4533 2.4746 19 14 10.0769 -9.1310 1.9290 20 1 11.3676 -9.6409 1.4006 21 1 9.9996 -9.3969 3.3879 22 1 8.9544 -9.8174 1.2405 23 6 8.7487 -4.8062 -0.8011 24 6 8.3274 -3.4967 -0.8384 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 5.0188 2.4209 -0.8721 31 1 3.7265 3.3096 -0.0305 32 1 4.9728 2.4516 0.9070 33 1 3.4760 -0.9032 -0.0818 34 1 8.0121 -0.9005 -0.5823 35 1 7.8773 -0.8763 1.1924 36 1 7.9186 -2.9295 2.4720 37 1 8.6559 -5.2701 2.5780 38 1 10.9532 -6.7869 3.2632 39 1 8.9833 -5.3266 -1.7179 40 1 8.2318 -2.9891 -1.7868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844467777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:32 Heat of formation + Delta-G solvation = -104.209351 kcal Electronic energy + Delta-G solvation = -21633.348815 eV Core-core repulsion = 18185.266814 eV Total energy + Delta-G solvation = -3448.082001 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.06524 -38.50742 -37.65622 -36.26234 -34.53193 -33.80042 -30.81229 -29.35424 -28.52117 -28.12010 -26.89772 -25.75767 -23.87137 -21.79464 -21.05161 -20.01002 -18.77208 -17.48945 -17.34084 -16.73789 -16.32248 -15.82570 -15.61900 -15.47753 -15.19092 -14.22972 -13.93947 -13.80299 -13.42855 -13.34459 -12.78754 -12.70133 -12.46108 -12.15460 -12.12270 -11.99303 -11.90164 -11.54862 -11.45755 -11.22438 -11.09278 -10.58316 -10.56363 -10.24290 -10.06002 -9.92312 -9.62452 -9.43092 -9.23235 -9.18155 -7.51861 -7.40752 -6.83853 -4.42253 1.15520 2.51573 2.99752 3.03454 3.05499 3.11324 3.17056 3.31129 3.49580 3.89562 4.51051 4.66053 4.87312 4.90435 4.92394 4.99344 5.07384 5.32596 5.36318 5.43891 5.64592 5.66543 5.73263 5.76112 6.02461 6.09872 6.23146 6.29296 6.34603 6.36808 6.79191 6.89349 6.95845 7.02305 7.20192 7.28621 7.55778 7.77018 7.99253 8.03511 8.18498 8.22971 8.57069 8.82275 8.90224 10.12151 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.002708 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.172930 B =10337.018800 C =10987.062189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.094 3.906 4 C -0.053 4.053 5 C -0.113 4.113 6 C -0.173 4.173 7 C 0.485 3.515 8 O -0.522 6.522 9 O -0.346 6.346 10 C 0.136 3.864 11 C -0.232 4.232 12 C -0.075 4.075 13 C -0.168 4.168 14 C 0.121 3.879 15 C -0.461 4.461 16 H 0.080 0.920 17 C 0.077 3.923 18 N -0.788 5.788 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.228 4.228 24 C -0.064 4.064 25 H 0.042 0.958 26 H 0.090 0.910 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.147 0.853 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.282 0.718 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 12.461 -2.288 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.018 3.982 4 C -0.054 4.054 5 C -0.169 4.169 6 C -0.192 4.192 7 C 0.332 3.668 8 O -0.415 6.415 9 O -0.262 6.262 10 C 0.064 3.936 11 C -0.234 4.234 12 C -0.094 4.094 13 C -0.187 4.187 14 C 0.118 3.882 15 C -0.490 4.490 16 H 0.098 0.902 17 C -0.142 4.142 18 N -0.413 5.413 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.248 4.248 24 C -0.083 4.083 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.165 0.835 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.273 12.553 -2.052 19.118 hybrid contribution 0.051 -0.584 0.237 0.632 sum -14.222 11.969 -1.815 18.677 Atomic orbital electron populations 1.22779 0.80431 1.03270 0.99997 1.87925 1.20083 1.26999 1.95486 1.21412 0.89906 0.85533 1.01327 1.22426 0.94155 0.95695 0.93130 1.20987 0.98191 0.92859 1.04819 1.21869 0.90929 0.99610 1.06794 1.21544 0.89867 0.82011 0.73388 1.90785 1.65687 1.37978 1.47055 1.86805 1.26458 1.30635 1.82344 1.21690 0.74871 0.96303 1.00714 1.18684 1.15987 0.94518 0.94169 1.20532 0.98718 0.95124 0.95003 1.21202 1.04671 0.93948 0.98912 1.17674 0.86947 0.92649 0.90910 1.19632 1.32324 0.95888 1.01128 0.90180 1.25943 0.93000 1.00326 0.94923 1.69826 1.24175 1.36946 1.10340 0.86307 0.79635 0.82417 0.78462 1.19518 1.19960 1.18313 1.20976 1.11943 0.94557 0.97320 1.20396 0.97908 0.94622 0.95336 0.93916 0.89193 0.93891 0.90984 0.91161 0.89676 0.92697 0.89418 0.83489 0.92134 0.92064 0.89293 0.86745 0.90699 0.88676 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.93 9.13 -35.23 -0.32 -4.25 16 3 C 0.09 0.80 6.27 36.00 0.23 1.02 16 4 C -0.05 -0.60 6.11 -101.14 -0.62 -1.22 16 5 C -0.11 -1.17 8.34 36.01 0.30 -0.87 16 6 C -0.17 -2.43 9.49 -37.85 -0.36 -2.79 16 7 C 0.48 8.32 7.87 34.26 0.27 8.59 16 8 O -0.52 -9.36 12.89 -19.29 -0.25 -9.61 16 9 O -0.35 -6.77 10.22 -40.77 -0.42 -7.19 16 10 C 0.14 2.72 5.59 36.01 0.20 2.92 16 11 C -0.23 -5.30 5.54 -104.33 -0.58 -5.88 16 12 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 13 C -0.17 -4.39 8.68 -38.87 -0.34 -4.73 16 14 C 0.12 3.23 5.54 -106.82 -0.59 2.64 16 15 C -0.46 -12.15 9.04 -37.74 -0.34 -12.49 16 16 H 0.08 2.02 7.91 -52.48 -0.42 1.61 16 17 C 0.08 1.91 5.10 -17.34 -0.09 1.82 16 18 N -0.79 -20.25 11.18 55.55 0.62 -19.63 16 19 Si 0.91 18.43 29.60 -169.99 -5.03 13.40 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 24 C -0.06 -1.48 9.67 -39.66 -0.38 -1.86 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.00 7.34 -51.93 -0.38 0.61 16 31 H 0.05 0.41 8.00 -51.93 -0.42 -0.01 16 32 H 0.09 1.05 7.11 -51.93 -0.37 0.68 16 33 H 0.15 2.06 6.91 -52.49 -0.36 1.69 16 34 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 35 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 36 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.11 3.06 6.39 -52.49 -0.34 2.72 16 38 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 39 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 345.04 15.07 5.20 5.20 Total: -1.00 -29.42 345.04 -7.78 -37.20 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.63 Total: 4.64 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -1.95 Total: -19.76 kcal Atomic # 7 Polarization: -20.25 SS G_CDS: 0.62 Total: -19.63 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.99 Total: -21.05 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.42 -7.78 -37.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844467777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.007 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds