Wall clock time and date at job start Tue Mar 31 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99830 * 2 1 4 4 C 1.50698 * 109.47040 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00123 * 180.02562 * 4 3 2 6 6 C 1.33083 * 119.99900 * 0.02562 * 4 3 2 7 7 C 1.46956 * 119.99836 * 185.01976 * 6 4 3 8 8 O 1.21534 * 119.99993 * 357.02725 * 7 6 4 9 9 O 1.34801 * 120.00055 * 177.02839 * 7 6 4 10 10 C 1.45193 * 117.00338 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47321 * 180.02562 * 10 9 7 12 12 C 1.38637 * 119.74642 * 269.72542 * 11 10 9 13 13 C 1.37619 * 120.24630 * 179.72201 * 12 11 10 14 14 C 1.40715 * 119.74365 * 0.56949 * 13 12 11 15 15 C 1.41396 * 120.24359 * 179.68125 * 14 13 12 16 16 H 1.08005 * 119.99929 * 152.80406 * 15 14 13 17 17 C 1.39940 * 120.00159 * 332.80394 * 15 14 13 18 18 N 1.30826 * 120.00379 * 341.57094 * 17 15 14 19 19 Si 1.86807 * 120.00135 * 161.56236 * 17 15 14 20 20 H 1.48499 * 109.46542 * 94.97988 * 19 17 15 21 21 H 1.48494 * 109.47045 * 214.97960 * 19 17 15 22 22 H 1.48494 * 109.46949 * 334.98221 * 19 17 15 23 23 C 1.40719 * 119.51279 * 359.70522 * 14 13 12 24 24 C 1.37613 * 119.74414 * 359.97438 * 23 14 13 25 25 H 1.09005 * 109.46586 * 60.00136 * 1 2 3 26 26 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47197 * 299.99971 * 1 2 3 28 28 H 1.09000 * 109.47064 * 60.00142 * 3 2 1 29 29 H 1.09000 * 109.47550 * 299.99756 * 3 2 1 30 30 H 1.09003 * 109.46732 * 238.23219 * 5 4 3 31 31 H 1.08996 * 109.47080 * 358.22746 * 5 4 3 32 32 H 1.08995 * 109.47085 * 118.23407 * 5 4 3 33 33 H 1.08000 * 120.00059 * 5.02015 * 6 4 3 34 34 H 1.09006 * 109.47099 * 299.99793 * 10 9 7 35 35 H 1.08994 * 109.47429 * 59.99872 * 10 9 7 36 36 H 1.07997 * 119.87797 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.13074 * 180.27651 * 13 12 11 38 38 H 0.96995 * 120.00796 * 179.97438 * 18 17 15 39 39 H 1.08005 * 120.12345 * 179.97438 * 23 14 13 40 40 H 1.07994 * 119.87736 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.3667 2.4280 0.0013 6 6 4.0848 -0.0150 0.0006 7 6 5.5454 -0.1331 0.1125 8 8 6.2347 0.8670 0.1508 9 8 6.1204 -1.3508 0.1728 10 6 7.5676 -1.3917 0.2833 11 6 8.0270 -2.8259 0.3371 12 6 8.1510 -3.4630 1.5622 13 6 8.5642 -4.7743 1.6230 14 6 8.8727 -5.4647 0.4363 15 6 9.3047 -6.8101 0.4869 16 1 9.1269 -7.4663 -0.3523 17 6 9.9626 -7.2915 1.6244 18 7 10.4975 -6.4533 2.4746 19 14 10.0769 -9.1310 1.9290 20 1 11.3676 -9.6409 1.4006 21 1 9.9996 -9.3969 3.3879 22 1 8.9544 -9.8174 1.2405 23 6 8.7487 -4.8062 -0.8011 24 6 8.3274 -3.4967 -0.8384 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 5.0188 2.4209 -0.8721 31 1 3.7265 3.3096 -0.0305 32 1 4.9728 2.4516 0.9070 33 1 3.4760 -0.9032 -0.0818 34 1 8.0121 -0.9005 -0.5823 35 1 7.8773 -0.8763 1.1924 36 1 7.9186 -2.9295 2.4720 37 1 8.6559 -5.2701 2.5780 38 1 10.9532 -6.7869 3.2632 39 1 8.9833 -5.3266 -1.7179 40 1 8.2318 -2.9891 -1.7868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844467777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:31 Heat of formation + Delta-G solvation = -119.115257 kcal Electronic energy + Delta-G solvation = -21633.995184 eV Core-core repulsion = 18185.266814 eV Total energy + Delta-G solvation = -3448.728369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.41535 -39.59314 -39.13839 -37.65362 -35.68872 -35.51021 -32.63173 -31.26853 -29.74615 -28.76485 -28.49784 -26.37056 -25.60531 -23.10832 -22.94667 -21.83602 -19.85745 -19.27045 -18.74315 -17.64078 -17.41242 -17.13663 -16.80246 -16.64894 -16.41356 -15.80640 -15.51231 -15.48970 -14.52407 -14.42032 -14.14103 -14.02533 -13.88641 -13.72617 -13.32624 -13.20780 -13.05738 -12.97986 -12.78971 -12.73685 -12.39524 -12.21187 -12.13510 -11.65216 -11.52925 -11.31025 -11.13806 -11.02734 -10.85735 -10.15694 -9.44903 -9.34286 -8.70309 -6.40225 0.09047 0.73308 1.08529 1.38137 1.43595 1.54143 1.92562 2.03970 2.19967 2.69799 2.72486 3.60421 3.76996 3.97502 4.08586 4.10223 4.16166 4.33461 4.38242 4.45979 4.47576 4.53050 4.58010 4.62235 4.65778 4.79626 4.92436 4.97838 5.09641 5.11817 5.26412 5.33321 5.34441 5.37339 5.59350 5.64069 5.86289 6.03914 6.11612 6.21088 6.30525 6.62292 6.82433 6.87535 6.95444 8.28666 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.002708 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.172930 B =10337.018800 C =10987.062189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.090 3.910 4 C -0.019 4.019 5 C -0.114 4.114 6 C -0.211 4.211 7 C 0.483 3.517 8 O -0.536 6.536 9 O -0.363 6.363 10 C 0.142 3.858 11 C -0.229 4.229 12 C -0.081 4.081 13 C -0.190 4.190 14 C 0.090 3.910 15 C -0.497 4.497 16 H 0.080 0.920 17 C 0.036 3.964 18 N -0.821 5.821 19 Si 0.984 3.016 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.258 1.258 23 C -0.243 4.243 24 C -0.066 4.066 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.143 0.857 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.291 0.709 39 H 0.104 0.896 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.496 13.808 -2.590 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C 0.015 3.985 4 C -0.019 4.019 5 C -0.170 4.170 6 C -0.230 4.230 7 C 0.332 3.668 8 O -0.430 6.430 9 O -0.280 6.280 10 C 0.070 3.930 11 C -0.230 4.230 12 C -0.099 4.099 13 C -0.210 4.210 14 C 0.088 3.912 15 C -0.526 4.526 16 H 0.098 0.902 17 C -0.180 4.180 18 N -0.446 5.446 19 Si 0.804 3.196 20 H -0.185 1.185 21 H -0.190 1.190 22 H -0.182 1.182 23 C -0.263 4.263 24 C -0.084 4.084 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.160 0.840 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.002 13.923 -2.362 21.342 hybrid contribution 0.458 -0.759 0.296 0.935 sum -15.544 13.164 -2.066 20.473 Atomic orbital electron populations 1.22949 0.78719 1.03875 1.01417 1.87889 1.22026 1.28054 1.95799 1.21644 0.87485 0.85567 1.03797 1.22905 0.96177 0.94804 0.88053 1.21013 0.98511 0.94058 1.03442 1.21719 0.88820 1.00851 1.11581 1.22072 0.90998 0.80969 0.72776 1.90774 1.66198 1.37900 1.48099 1.86763 1.25768 1.32404 1.83094 1.21509 0.75641 0.94291 1.01569 1.19011 1.14563 0.95820 0.93637 1.20768 0.98169 0.94590 0.96410 1.21174 1.06432 0.95053 0.98320 1.18036 0.87880 0.93495 0.91832 1.19890 1.33981 0.96263 1.02430 0.90174 1.26822 0.91900 1.05203 0.94067 1.69871 1.24620 1.39204 1.10947 0.85168 0.79784 0.75995 0.78635 1.18540 1.18968 1.18152 1.21197 1.12409 0.95508 0.97148 1.20714 0.96858 0.94119 0.96745 0.92376 0.89185 0.92507 0.88319 0.88280 0.90842 0.88783 0.90824 0.83955 0.90984 0.91530 0.87626 0.88230 0.89873 0.87756 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.58 9.13 -148.98 -1.36 -8.94 16 3 C 0.09 1.21 6.27 71.24 0.45 1.65 16 4 C -0.02 -0.37 6.11 -17.60 -0.11 -0.48 16 5 C -0.11 -2.10 8.34 71.24 0.59 -1.51 16 6 C -0.21 -5.77 9.49 23.40 0.22 -5.54 16 7 C 0.48 16.44 7.87 70.11 0.55 16.99 16 8 O -0.54 -18.94 12.89 19.72 0.25 -18.68 16 9 O -0.36 -14.18 10.22 -57.13 -0.58 -14.76 16 10 C 0.14 5.59 5.59 71.24 0.40 5.99 16 11 C -0.23 -10.45 5.54 -19.67 -0.11 -10.56 16 12 C -0.08 -3.95 9.67 22.22 0.21 -3.73 16 13 C -0.19 -10.32 8.68 22.73 0.20 -10.13 16 14 C 0.09 4.98 5.54 -21.29 -0.12 4.86 16 15 C -0.50 -27.04 9.04 23.46 0.21 -26.83 16 16 H 0.08 4.18 7.91 -2.91 -0.02 4.16 16 17 C 0.04 1.82 5.10 85.26 0.43 2.25 16 18 N -0.82 -43.26 11.18 21.83 0.24 -43.02 16 19 Si 0.98 38.10 29.60 68.60 2.03 40.13 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 21 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 23 C -0.24 -12.28 9.80 22.73 0.22 -12.06 16 24 C -0.07 -3.04 9.67 22.22 0.21 -2.82 16 25 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 26 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.59 7.34 -2.39 -0.02 1.57 16 31 H 0.09 1.00 8.00 -2.39 -0.02 0.98 16 32 H 0.07 1.64 7.11 -2.39 -0.02 1.62 16 33 H 0.14 3.99 6.91 -2.91 -0.02 3.97 16 34 H 0.07 2.64 8.08 -2.38 -0.02 2.62 16 35 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 36 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.10 5.58 6.39 -2.91 -0.02 5.56 16 38 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 39 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 40 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -65.50 345.04 6.24 -59.26 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 1.03 Total: 26.40 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 4.62 Total: -40.39 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.24 Total: -43.02 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -1.69 Total: -42.39 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -65.50 6.24 -59.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844467777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.854 kcal (2) G-P(sol) polarization free energy of solvation -65.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds