Wall clock time and date at job start Tue Mar 31 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00439 * 2 1 4 4 C 1.50693 * 109.47637 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00125 * 273.59373 * 4 3 2 6 6 C 1.33083 * 120.00072 * 93.59112 * 4 3 2 7 7 C 1.46951 * 120.00078 * 351.25162 * 6 4 3 8 8 O 1.21529 * 119.99936 * 352.55859 * 7 6 4 9 9 O 1.34798 * 120.00042 * 172.56372 * 7 6 4 10 10 C 1.45194 * 117.00226 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47549 * 179.97438 * 10 9 7 12 12 C 1.38633 * 119.74777 * 269.73060 * 11 10 9 13 13 C 1.37620 * 120.24092 * 179.71821 * 12 11 10 14 14 C 1.40715 * 119.74941 * 0.57248 * 13 12 11 15 15 C 1.41400 * 120.24487 * 179.68026 * 14 13 12 16 16 H 1.07998 * 119.99589 * 151.66154 * 15 14 13 17 17 C 1.39944 * 120.00248 * 331.66724 * 15 14 13 18 18 N 1.30831 * 119.99586 * 339.84536 * 17 15 14 19 19 Si 1.86795 * 120.00266 * 159.85138 * 17 15 14 20 20 H 1.48496 * 109.47044 * 94.98075 * 19 17 15 21 21 H 1.48501 * 109.46952 * 214.98148 * 19 17 15 22 22 H 1.48498 * 109.46932 * 334.97778 * 19 17 15 23 23 C 1.40716 * 119.51051 * 359.70229 * 14 13 12 24 24 C 1.37613 * 119.74203 * 359.97438 * 23 14 13 25 25 H 1.09004 * 109.46945 * 300.00743 * 1 2 3 26 26 H 1.09003 * 109.47215 * 59.99777 * 1 2 3 27 27 H 1.08993 * 109.47487 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47210 * 59.99162 * 3 2 1 29 29 H 1.09009 * 109.46594 * 299.99799 * 3 2 1 30 30 H 1.08994 * 109.47624 * 270.00016 * 5 4 3 31 31 H 1.09003 * 109.47157 * 29.99889 * 5 4 3 32 32 H 1.09005 * 109.47752 * 149.99314 * 5 4 3 33 33 H 1.08005 * 120.00117 * 171.25262 * 6 4 3 34 34 H 1.08999 * 109.47322 * 300.00083 * 10 9 7 35 35 H 1.09001 * 109.46935 * 59.99948 * 10 9 7 36 36 H 1.07996 * 119.87726 * 359.97279 * 12 11 10 37 37 H 1.08007 * 120.12453 * 180.27535 * 13 12 11 38 38 H 0.96995 * 119.99939 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.12404 * 179.97438 * 23 14 13 40 40 H 1.08006 * 119.87544 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2577 1.0452 1.3015 6 6 4.1811 1.2061 -1.1512 7 6 3.4519 1.1498 -2.4258 8 8 2.2533 0.9495 -2.4318 9 8 4.1126 1.3201 -3.5883 10 6 3.3283 1.2523 -4.8083 11 6 4.2294 1.4649 -5.9974 12 6 4.4380 2.7469 -6.4820 13 6 5.2635 2.9532 -7.5637 14 6 5.8872 1.8557 -8.1854 15 6 6.7320 2.0550 -9.3016 16 1 7.5386 1.3644 -9.4984 17 6 6.5230 3.1472 -10.1513 18 7 5.3605 3.7472 -10.1714 19 14 7.9035 3.7482 -11.2568 20 1 7.7672 3.1294 -12.5998 21 1 7.8290 5.2260 -11.3828 22 1 9.2118 3.3671 -10.6665 23 6 5.6636 0.5584 -7.6884 24 6 4.8395 0.3763 -6.6015 25 1 -0.3633 0.5140 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 4.5184 2.0335 1.6801 31 1 3.6265 0.5329 2.0277 32 1 5.1673 0.4669 1.1389 33 1 5.2596 1.2635 -1.1481 34 1 2.8542 0.2736 -4.8816 35 1 2.5616 2.0270 -4.7909 36 1 3.9542 3.5871 -6.0064 37 1 5.4281 3.9533 -7.9369 38 1 5.2157 4.5044 -10.7600 39 1 6.1369 -0.2911 -8.1583 40 1 4.6667 -0.6185 -6.2180 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844467778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:34 Heat of formation + Delta-G solvation = -99.466056 kcal Electronic energy + Delta-G solvation = -21854.437979 eV Core-core repulsion = 18406.561663 eV Total energy + Delta-G solvation = -3447.876316 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17177 -38.20243 -37.56611 -36.10015 -34.82229 -33.81942 -30.84618 -29.39385 -28.64360 -27.88636 -26.97470 -25.52321 -23.87642 -21.77732 -21.08668 -20.04621 -18.84482 -17.53659 -17.36172 -16.61453 -16.22703 -15.97853 -15.66229 -15.29576 -14.65955 -14.15253 -13.93506 -13.81825 -13.63672 -13.45341 -13.00437 -12.58741 -12.43714 -12.30279 -12.05743 -12.02273 -11.74729 -11.54228 -11.33495 -11.27468 -11.11244 -10.61797 -10.58813 -10.18550 -10.12046 -9.68244 -9.50022 -9.44103 -9.37448 -9.19410 -7.54926 -7.43817 -6.87485 -4.44361 1.00087 2.48057 2.97355 3.00217 3.03827 3.06387 3.09911 3.44432 3.87205 3.87981 4.50966 4.65131 4.74073 5.06942 5.16720 5.25647 5.27475 5.33377 5.36793 5.59195 5.60857 5.62478 5.64769 5.69872 5.72957 6.03070 6.11296 6.25981 6.30691 6.32518 6.86027 6.91214 7.00204 7.08051 7.15646 7.24788 7.52870 7.73596 7.96231 7.99579 8.13323 8.20074 8.53874 8.79430 8.87228 10.09492 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036191 B = 0.002636 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.477066 B =10621.276105 C =10859.409113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.374 6.374 3 C 0.080 3.920 4 C -0.039 4.039 5 C -0.121 4.121 6 C -0.171 4.171 7 C 0.482 3.518 8 O -0.509 6.509 9 O -0.347 6.347 10 C 0.137 3.863 11 C -0.233 4.233 12 C -0.075 4.075 13 C -0.169 4.169 14 C 0.123 3.877 15 C -0.463 4.463 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.786 5.786 19 Si 0.906 3.094 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.228 4.228 24 C -0.064 4.064 25 H 0.035 0.965 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.282 0.718 39 H 0.095 0.905 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 -1.632 17.110 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.292 6.292 3 C 0.005 3.995 4 C -0.040 4.040 5 C -0.177 4.177 6 C -0.190 4.190 7 C 0.329 3.671 8 O -0.401 6.401 9 O -0.264 6.264 10 C 0.065 3.935 11 C -0.235 4.235 12 C -0.093 4.093 13 C -0.188 4.188 14 C 0.120 3.880 15 C -0.492 4.492 16 H 0.099 0.901 17 C -0.141 4.141 18 N -0.411 5.411 19 Si 0.730 3.270 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.247 4.247 24 C -0.082 4.082 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.161 0.839 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.481 -1.667 16.918 17.581 hybrid contribution 0.209 0.581 -0.712 0.943 sum -4.272 -1.085 16.206 16.795 Atomic orbital electron populations 1.22678 0.81110 1.02469 0.99802 1.87898 1.19590 1.26375 1.95370 1.21780 0.89541 0.86633 1.01588 1.22345 0.94932 0.91705 0.95041 1.20944 1.00286 1.02746 0.93734 1.22022 1.01025 1.06711 0.89289 1.21494 0.85989 0.73854 0.85767 1.90772 1.15872 1.45289 1.88156 1.86798 1.43309 1.81390 1.14903 1.21689 0.92026 1.00755 0.79032 1.18678 1.10570 0.94435 0.99770 1.20515 0.97802 0.94413 0.96581 1.21143 1.02032 0.98942 0.96665 1.17664 0.89063 0.90555 0.90716 1.19618 1.13261 1.08584 1.07733 0.90123 1.25935 0.95751 0.95199 0.97190 1.69837 1.21527 1.17653 1.32072 0.86331 0.82131 0.78525 0.79983 1.19502 1.19949 1.18290 1.20985 1.05778 0.96444 1.01509 1.20409 0.96180 0.95998 0.95609 0.94646 0.93657 0.89878 0.93455 0.89645 0.90297 0.90525 0.90530 0.83906 0.92058 0.92106 0.89310 0.87085 0.90672 0.88638 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.49 16 2 O -0.37 -5.05 10.16 -50.61 -0.51 -5.56 16 3 C 0.08 0.97 5.04 36.00 0.18 1.15 16 4 C -0.04 -0.44 5.73 -101.15 -0.58 -1.02 16 5 C -0.12 -0.90 10.04 36.00 0.36 -0.54 16 6 C -0.17 -2.20 9.74 -37.85 -0.37 -2.57 16 7 C 0.48 8.07 7.72 34.26 0.26 8.34 16 8 O -0.51 -9.20 12.67 -24.85 -0.31 -9.51 16 9 O -0.35 -6.57 10.22 -40.76 -0.42 -6.98 16 10 C 0.14 2.68 5.59 36.01 0.20 2.88 16 11 C -0.23 -5.24 5.54 -104.33 -0.58 -5.81 16 12 C -0.07 -1.75 9.67 -39.66 -0.38 -2.13 16 13 C -0.17 -4.34 8.68 -38.87 -0.34 -4.68 16 14 C 0.12 3.24 5.52 -106.82 -0.59 2.65 16 15 C -0.46 -12.10 9.02 -37.74 -0.34 -12.44 16 16 H 0.08 2.02 7.92 -52.49 -0.42 1.60 16 17 C 0.08 1.93 5.05 -17.34 -0.09 1.85 16 18 N -0.79 -20.05 11.38 55.55 0.63 -19.42 16 19 Si 0.91 18.25 29.60 -169.99 -5.03 13.22 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 22 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 23 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 24 C -0.06 -1.45 9.67 -39.66 -0.38 -1.83 16 25 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 1.19 5.61 -51.92 -0.29 0.90 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.54 8.12 -51.93 -0.42 0.11 16 32 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 33 H 0.14 1.54 8.06 -52.48 -0.42 1.11 16 34 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 36 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.11 2.92 6.55 -52.48 -0.34 2.57 16 38 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -29.44 346.83 -8.00 -37.44 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.67 Total: 4.24 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -1.91 Total: -18.64 kcal Atomic # 7 Polarization: -20.05 SS G_CDS: 0.63 Total: -19.42 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.25 Total: -22.06 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.44 -8.00 -37.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844467778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.031 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds