Wall clock time and date at job start Tue Mar 31 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00439 * 2 1 4 4 C 1.50693 * 109.47637 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00125 * 273.59373 * 4 3 2 6 6 C 1.33083 * 120.00072 * 93.59112 * 4 3 2 7 7 C 1.46951 * 120.00078 * 351.25162 * 6 4 3 8 8 O 1.21529 * 119.99936 * 352.55859 * 7 6 4 9 9 O 1.34798 * 120.00042 * 172.56372 * 7 6 4 10 10 C 1.45194 * 117.00226 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47549 * 179.97438 * 10 9 7 12 12 C 1.38633 * 119.74777 * 269.73060 * 11 10 9 13 13 C 1.37620 * 120.24092 * 179.71821 * 12 11 10 14 14 C 1.40715 * 119.74941 * 0.57248 * 13 12 11 15 15 C 1.41400 * 120.24487 * 179.68026 * 14 13 12 16 16 H 1.07998 * 119.99589 * 151.66154 * 15 14 13 17 17 C 1.39944 * 120.00248 * 331.66724 * 15 14 13 18 18 N 1.30831 * 119.99586 * 339.84536 * 17 15 14 19 19 Si 1.86795 * 120.00266 * 159.85138 * 17 15 14 20 20 H 1.48496 * 109.47044 * 94.98075 * 19 17 15 21 21 H 1.48501 * 109.46952 * 214.98148 * 19 17 15 22 22 H 1.48498 * 109.46932 * 334.97778 * 19 17 15 23 23 C 1.40716 * 119.51051 * 359.70229 * 14 13 12 24 24 C 1.37613 * 119.74203 * 359.97438 * 23 14 13 25 25 H 1.09004 * 109.46945 * 300.00743 * 1 2 3 26 26 H 1.09003 * 109.47215 * 59.99777 * 1 2 3 27 27 H 1.08993 * 109.47487 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47210 * 59.99162 * 3 2 1 29 29 H 1.09009 * 109.46594 * 299.99799 * 3 2 1 30 30 H 1.08994 * 109.47624 * 270.00016 * 5 4 3 31 31 H 1.09003 * 109.47157 * 29.99889 * 5 4 3 32 32 H 1.09005 * 109.47752 * 149.99314 * 5 4 3 33 33 H 1.08005 * 120.00117 * 171.25262 * 6 4 3 34 34 H 1.08999 * 109.47322 * 300.00083 * 10 9 7 35 35 H 1.09001 * 109.46935 * 59.99948 * 10 9 7 36 36 H 1.07996 * 119.87726 * 359.97279 * 12 11 10 37 37 H 1.08007 * 120.12453 * 180.27535 * 13 12 11 38 38 H 0.96995 * 119.99939 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.12404 * 179.97438 * 23 14 13 40 40 H 1.08006 * 119.87544 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2577 1.0452 1.3015 6 6 4.1811 1.2061 -1.1512 7 6 3.4519 1.1498 -2.4258 8 8 2.2533 0.9495 -2.4318 9 8 4.1126 1.3201 -3.5883 10 6 3.3283 1.2523 -4.8083 11 6 4.2294 1.4649 -5.9974 12 6 4.4380 2.7469 -6.4820 13 6 5.2635 2.9532 -7.5637 14 6 5.8872 1.8557 -8.1854 15 6 6.7320 2.0550 -9.3016 16 1 7.5386 1.3644 -9.4984 17 6 6.5230 3.1472 -10.1513 18 7 5.3605 3.7472 -10.1714 19 14 7.9035 3.7482 -11.2568 20 1 7.7672 3.1294 -12.5998 21 1 7.8290 5.2260 -11.3828 22 1 9.2118 3.3671 -10.6665 23 6 5.6636 0.5584 -7.6884 24 6 4.8395 0.3763 -6.6015 25 1 -0.3633 0.5140 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 4.5184 2.0335 1.6801 31 1 3.6265 0.5329 2.0277 32 1 5.1673 0.4669 1.1389 33 1 5.2596 1.2635 -1.1481 34 1 2.8542 0.2736 -4.8816 35 1 2.5616 2.0270 -4.7909 36 1 3.9542 3.5871 -6.0064 37 1 5.4281 3.9533 -7.9369 38 1 5.2157 4.5044 -10.7600 39 1 6.1369 -0.2911 -8.1583 40 1 4.6667 -0.6185 -6.2180 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844467778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:33 Heat of formation + Delta-G solvation = -114.020285 kcal Electronic energy + Delta-G solvation = -21855.069098 eV Core-core repulsion = 18406.561663 eV Total energy + Delta-G solvation = -3448.507435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.48165 -39.62481 -38.98185 -37.45344 -35.79625 -35.65453 -32.64019 -31.28096 -29.76576 -28.69878 -28.52564 -26.43263 -25.57731 -23.08538 -22.94166 -21.84410 -19.89118 -19.26881 -18.77712 -17.71660 -17.47278 -17.22192 -17.04353 -16.71235 -16.11059 -15.68086 -15.47325 -15.21892 -14.66449 -14.40452 -14.12240 -14.06083 -13.90175 -13.83306 -13.45796 -13.21791 -13.09414 -12.96924 -12.79073 -12.52450 -12.39311 -12.26227 -12.15445 -11.66314 -11.54921 -11.32101 -11.29062 -11.03117 -10.42430 -10.35844 -9.45124 -9.34717 -8.71891 -6.40088 -0.00962 0.72789 1.07727 1.38109 1.43070 1.54080 1.87450 2.00709 2.19872 2.71190 3.01372 3.62109 3.78787 3.82901 4.07541 4.08638 4.09067 4.30794 4.45213 4.46407 4.49047 4.52361 4.52873 4.59973 4.70394 4.81831 4.83704 4.97065 5.02153 5.11967 5.24535 5.25332 5.35591 5.40847 5.59818 5.63776 5.85518 6.03331 6.10426 6.19170 6.30368 6.61583 6.80885 6.87208 6.94883 8.28047 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036191 B = 0.002636 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.477066 B =10621.276105 C =10859.409113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.397 6.397 3 C 0.073 3.927 4 C -0.017 4.017 5 C -0.119 4.119 6 C -0.198 4.198 7 C 0.477 3.523 8 O -0.529 6.529 9 O -0.360 6.360 10 C 0.144 3.856 11 C -0.229 4.229 12 C -0.079 4.079 13 C -0.190 4.190 14 C 0.092 3.908 15 C -0.500 4.500 16 H 0.080 0.920 17 C 0.038 3.962 18 N -0.820 5.820 19 Si 0.982 3.018 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.258 1.258 23 C -0.242 4.242 24 C -0.066 4.066 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.291 0.709 39 H 0.104 0.896 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.791 -1.720 19.122 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.317 6.317 3 C -0.003 4.003 4 C -0.018 4.018 5 C -0.175 4.175 6 C -0.217 4.217 7 C 0.326 3.674 8 O -0.422 6.422 9 O -0.277 6.277 10 C 0.071 3.929 11 C -0.230 4.230 12 C -0.098 4.098 13 C -0.209 4.209 14 C 0.090 3.910 15 C -0.528 4.528 16 H 0.098 0.902 17 C -0.178 4.178 18 N -0.445 5.445 19 Si 0.802 3.198 20 H -0.186 1.186 21 H -0.190 1.190 22 H -0.181 1.181 23 C -0.262 4.262 24 C -0.084 4.084 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.181 0.819 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.184 -1.764 18.951 19.488 hybrid contribution -0.056 0.558 -1.130 1.262 sum -4.240 -1.206 17.821 18.358 Atomic orbital electron populations 1.22829 0.79784 1.03483 1.00339 1.87850 1.21192 1.27103 1.95515 1.21883 0.90230 0.86331 1.01865 1.22804 0.94743 0.88082 0.96154 1.21065 1.00373 1.04428 0.91591 1.22081 1.01885 1.10008 0.87698 1.22207 0.86074 0.73091 0.86046 1.90773 1.16744 1.46401 1.88261 1.86756 1.43564 1.82088 1.15339 1.21476 0.91314 1.01369 0.78725 1.18995 1.09704 0.93874 1.00419 1.20751 0.97290 0.95743 0.95967 1.21115 1.03639 0.98275 0.97884 1.18019 0.89941 0.91522 0.91548 1.19870 1.13992 1.10218 1.08743 0.90171 1.26797 0.98006 0.94669 0.98332 1.69878 1.23271 1.18244 1.33140 0.85199 0.78465 0.78211 0.77909 1.18591 1.18967 1.18135 1.21196 1.06503 0.96153 1.02320 1.20715 0.95313 0.97470 0.94903 0.92206 0.94969 0.88733 0.90475 0.92109 0.87852 0.89545 0.89398 0.81917 0.91330 0.91577 0.87496 0.88549 0.89861 0.87818 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.40 -10.12 10.16 -134.27 -1.36 -11.48 16 3 C 0.07 1.61 5.04 71.23 0.36 1.97 16 4 C -0.02 -0.34 5.73 -17.61 -0.10 -0.44 16 5 C -0.12 -1.33 10.04 71.23 0.72 -0.61 16 6 C -0.20 -4.77 9.74 23.40 0.23 -4.54 16 7 C 0.48 15.68 7.72 70.10 0.54 16.22 16 8 O -0.53 -19.01 12.67 25.06 0.32 -18.70 16 9 O -0.36 -13.40 10.22 -57.09 -0.58 -13.98 16 10 C 0.14 5.52 5.59 71.24 0.40 5.92 16 11 C -0.23 -10.21 5.54 -19.67 -0.11 -10.32 16 12 C -0.08 -3.76 9.67 22.22 0.21 -3.55 16 13 C -0.19 -10.09 8.68 22.73 0.20 -9.89 16 14 C 0.09 5.02 5.52 -21.29 -0.12 4.91 16 15 C -0.50 -26.90 9.02 23.46 0.21 -26.69 16 16 H 0.08 4.14 7.92 -2.91 -0.02 4.12 16 17 C 0.04 1.91 5.05 85.26 0.43 2.34 16 18 N -0.82 -42.82 11.38 21.83 0.25 -42.58 16 19 Si 0.98 37.70 29.60 68.60 2.03 39.73 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 23 C -0.24 -12.08 9.80 22.73 0.22 -11.85 16 24 C -0.07 -2.97 9.67 22.22 0.21 -2.76 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.66 5.61 -2.38 -0.01 1.65 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.86 8.12 -2.39 -0.02 0.84 16 32 H 0.09 0.85 8.07 -2.38 -0.02 0.83 16 33 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 34 H 0.07 2.52 8.08 -2.39 -0.02 2.50 16 35 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 36 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 37 H 0.10 5.30 6.55 -2.91 -0.02 5.28 16 38 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 39 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 40 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -65.15 346.83 6.33 -58.82 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 1.03 Total: 25.62 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 4.65 Total: -37.43 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.25 Total: -42.58 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -1.63 Total: -44.16 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -65.15 6.33 -58.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844467778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.200 kcal (2) G-P(sol) polarization free energy of solvation -65.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds