Wall clock time and date at job start Tue Mar 31 2020 06:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47318 * 2 1 4 4 C 1.50698 * 109.47303 * 120.00503 * 2 1 3 5 5 H 1.08007 * 119.99906 * 120.00275 * 4 2 1 6 6 C 1.37873 * 120.00180 * 299.99776 * 4 2 1 7 7 N 1.31512 * 119.99911 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00135 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47074 * 60.00049 * 8 6 4 10 10 H 1.48497 * 109.47210 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47163 * 300.00299 * 8 6 4 12 12 O 1.45207 * 109.46982 * 240.00651 * 2 1 3 13 13 C 1.34746 * 117.00040 * 90.00005 * 12 2 1 14 14 O 1.21511 * 120.00026 * 0.02562 * 13 12 2 15 15 C 1.47396 * 120.00025 * 180.02562 * 13 12 2 16 16 C 1.39595 * 120.06261 * 359.97438 * 15 13 12 17 17 C 1.37758 * 120.18059 * 179.71386 * 16 15 13 18 18 C 1.38666 * 119.98647 * 359.82306 * 17 16 15 19 19 C 1.37652 * 120.33138 * 0.02562 * 18 17 16 20 20 C 1.38878 * 120.87422 * 0.36796 * 19 18 17 21 21 O 1.35842 * 111.30767 * 178.98185 * 20 19 18 22 22 C 1.43782 * 109.23358 * 19.35502 * 21 20 19 23 23 C 1.53001 * 110.75340 * 90.42867 * 22 21 20 24 24 C 1.52994 * 110.75733 * 213.61322 * 22 21 20 25 25 C 1.51675 * 132.13591 * 180.91635 * 19 18 17 26 26 H 1.09004 * 109.47018 * 299.99677 * 1 2 3 27 27 H 1.08998 * 109.47611 * 59.99033 * 1 2 3 28 28 H 1.08996 * 109.47450 * 179.97438 * 1 2 3 29 29 H 0.97001 * 120.00085 * 180.02562 * 7 6 4 30 30 H 1.07997 * 119.90707 * 359.72944 * 16 15 13 31 31 H 1.07997 * 120.00951 * 179.85136 * 17 16 15 32 32 H 1.08000 * 119.82975 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47051 * 61.45393 * 23 22 21 34 34 H 1.08998 * 109.47238 * 181.45637 * 23 22 21 35 35 H 1.09001 * 109.47018 * 301.45480 * 23 22 21 36 36 H 1.09000 * 109.47236 * 58.54319 * 24 22 21 37 37 H 1.08999 * 109.47369 * 178.54522 * 24 22 21 38 38 H 1.09003 * 109.47198 * 298.54451 * 24 22 21 39 39 H 1.08997 * 110.94544 * 282.55502 * 25 19 18 40 40 H 1.09001 * 110.94353 * 46.24789 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9428 0.8294 2.6035 8 14 2.3215 -1.1207 4.0078 9 1 3.8065 -1.1213 4.0080 10 1 1.8272 -0.4204 5.2204 11 1 1.8260 -2.5206 4.0075 12 8 2.0139 -0.6844 -1.1857 13 6 2.2178 0.0671 -2.2854 14 8 1.9977 1.2617 -2.2543 15 6 2.7079 -0.5599 -3.5260 16 6 2.9617 -1.9321 -3.5631 17 6 3.4142 -2.5217 -4.7230 18 6 3.6151 -1.7521 -5.8589 19 6 3.3651 -0.3987 -5.8347 20 6 2.9162 0.2226 -4.6766 21 8 2.7547 1.5583 -4.8638 22 6 2.6577 1.8309 -6.2722 23 6 1.2001 1.7818 -6.7348 24 6 3.2851 3.1855 -6.6069 25 6 3.4716 0.6750 -6.9008 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7089 1.1610 3.4845 30 1 2.8027 -2.5332 -2.6800 31 1 3.6120 -3.5831 -4.7479 32 1 3.9695 -2.2170 -6.7670 33 1 0.6264 2.5457 -6.2101 34 1 1.1531 1.9654 -7.8082 35 1 0.7823 0.7991 -6.5157 36 1 4.3304 3.1881 -6.2979 37 1 3.2234 3.3592 -7.6811 38 1 2.7486 3.9746 -6.0799 39 1 4.5098 0.9685 -7.0559 40 1 3.0185 0.3428 -7.8349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847648245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:40 Heat of formation + Delta-G solvation = -99.927439 kcal Electronic energy + Delta-G solvation = -23199.986084 eV Core-core repulsion = 19752.089761 eV Total energy + Delta-G solvation = -3447.896323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.45027 -39.22345 -37.49000 -35.53119 -33.87185 -33.20573 -31.76029 -30.38515 -29.33122 -27.65646 -26.66798 -25.27577 -24.08735 -22.02441 -21.28318 -20.71237 -19.51348 -17.29904 -17.12537 -16.48002 -16.11112 -15.80541 -15.37678 -14.93194 -14.73167 -14.48045 -14.01065 -13.86171 -13.29555 -13.05054 -12.86193 -12.74677 -12.42774 -12.19002 -12.15469 -11.93830 -11.83192 -11.59761 -11.40442 -11.16345 -11.00909 -10.98863 -10.79701 -10.76118 -10.33404 -10.23458 -9.53404 -9.44443 -8.90451 -8.84552 -8.43822 -8.15517 -6.13356 -4.20183 0.92480 1.32808 3.07866 3.18822 3.29586 3.32634 3.35098 3.69772 3.97052 4.23075 4.30973 4.38482 4.61520 4.79582 4.86785 5.06425 5.14375 5.19519 5.27772 5.30726 5.40234 5.46191 5.53838 5.57670 5.71383 5.76554 5.88546 6.00105 6.01779 6.26541 6.32403 6.42174 6.65138 6.71673 6.95911 6.98633 7.17803 7.25305 7.64891 7.79163 8.00384 8.20070 8.71819 8.95566 9.44927 10.94152 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024385 B = 0.004012 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.989848 B = 6977.775743 C = 7671.759357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.217 3.783 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.354 6.354 13 C 0.493 3.507 14 O -0.505 6.505 15 C -0.136 4.136 16 C -0.029 4.029 17 C -0.166 4.166 18 C -0.046 4.046 19 C -0.195 4.195 20 C 0.170 3.830 21 O -0.267 6.267 22 C 0.093 3.907 23 C -0.162 4.162 24 C -0.140 4.140 25 C -0.096 4.096 26 H 0.099 0.901 27 H 0.015 0.985 28 H 0.036 0.964 29 H 0.266 0.734 30 H 0.149 0.851 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 -2.465 -21.120 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.164 3.836 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.199 1.199 12 O -0.271 6.271 13 C 0.337 3.663 14 O -0.395 6.395 15 C -0.138 4.138 16 C -0.047 4.047 17 C -0.184 4.184 18 C -0.064 4.064 19 C -0.196 4.196 20 C 0.123 3.877 21 O -0.180 6.180 22 C 0.055 3.945 23 C -0.220 4.220 24 C -0.197 4.197 25 C -0.133 4.133 26 H 0.117 0.883 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.167 0.833 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.985 -1.773 -20.749 21.203 hybrid contribution 0.208 -0.355 0.802 0.901 sum 4.193 -2.129 -19.948 20.494 Atomic orbital electron populations 1.22154 0.97611 1.00047 1.01370 1.20618 0.91340 0.93985 0.77632 0.93573 1.20988 1.32473 1.13458 0.88896 0.91355 1.24882 0.94954 0.95105 0.99019 1.69896 1.36049 1.22575 1.24204 0.86331 0.79209 0.79516 0.81049 1.20002 1.21061 1.19946 1.86521 1.76243 1.43219 1.21080 1.20790 0.75604 0.85420 0.84520 1.90813 1.48235 1.15926 1.84553 1.18774 1.10288 0.93262 0.91484 1.21376 0.92263 0.92241 0.98810 1.20993 1.04427 1.00349 0.92610 1.20450 0.96081 0.91353 0.98487 1.20696 1.07789 0.95362 0.95733 1.19450 0.91319 0.83704 0.93240 1.87091 1.86510 1.18971 1.25410 1.22856 0.96140 0.96313 0.79151 1.22193 0.94614 1.03563 1.01592 1.21818 1.01525 0.94461 1.01929 1.21864 1.01552 0.92244 0.97646 0.88272 0.96547 0.94463 0.92387 0.83292 0.84824 0.85571 0.90961 0.90770 0.91839 0.91388 0.90425 0.90935 0.89077 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.33 37.15 0.35 -3.73 16 2 C 0.22 6.08 2.56 -27.89 -0.07 6.01 16 3 H 0.05 1.44 7.16 -51.93 -0.37 1.06 16 4 C -0.52 -14.97 8.90 -34.44 -0.31 -15.28 16 5 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.84 11.32 55.43 0.63 -25.22 16 8 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 O -0.35 -8.92 9.09 -40.62 -0.37 -9.29 16 13 C 0.49 11.64 7.86 34.46 0.27 11.91 16 14 O -0.51 -13.35 15.12 -24.89 -0.38 -13.73 16 15 C -0.14 -2.56 5.89 -104.74 -0.62 -3.18 16 16 C -0.03 -0.44 9.59 -39.25 -0.38 -0.82 16 17 C -0.17 -1.94 10.05 -39.60 -0.40 -2.34 16 18 C -0.05 -0.50 10.02 -39.64 -0.40 -0.90 16 19 C -0.19 -2.52 6.26 -104.12 -0.65 -3.17 16 20 C 0.17 2.90 6.63 -38.42 -0.25 2.65 16 21 O -0.27 -4.66 9.55 -34.84 -0.33 -4.99 16 22 C 0.09 1.10 1.26 -89.72 -0.11 0.99 16 23 C -0.16 -1.70 8.84 37.16 0.33 -1.37 16 24 C -0.14 -1.31 8.96 37.15 0.33 -0.98 16 25 C -0.10 -0.95 6.19 -26.50 -0.16 -1.11 16 26 H 0.10 2.77 6.07 -51.93 -0.32 2.46 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 30 H 0.15 2.22 7.59 -52.49 -0.40 1.82 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 36 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 40 H 0.09 0.68 7.92 -51.93 -0.41 0.27 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -33.61 337.56 -8.23 -41.84 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.68 Total: -0.45 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.17 Total: -9.66 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.63 Total: -25.22 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -1.08 Total: -28.01 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.61 -8.23 -41.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847648245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.089 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds