Wall clock time and date at job start Tue Mar 31 2020 06:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47318 * 2 1 4 4 C 1.50698 * 109.47303 * 120.00503 * 2 1 3 5 5 H 1.08007 * 119.99906 * 120.00275 * 4 2 1 6 6 C 1.37873 * 120.00180 * 299.99776 * 4 2 1 7 7 N 1.31512 * 119.99911 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00135 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47074 * 60.00049 * 8 6 4 10 10 H 1.48497 * 109.47210 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47163 * 300.00299 * 8 6 4 12 12 O 1.45207 * 109.46982 * 240.00651 * 2 1 3 13 13 C 1.34746 * 117.00040 * 90.00005 * 12 2 1 14 14 O 1.21511 * 120.00026 * 0.02562 * 13 12 2 15 15 C 1.47396 * 120.00025 * 180.02562 * 13 12 2 16 16 C 1.39595 * 120.06261 * 359.97438 * 15 13 12 17 17 C 1.37758 * 120.18059 * 179.71386 * 16 15 13 18 18 C 1.38666 * 119.98647 * 359.82306 * 17 16 15 19 19 C 1.37652 * 120.33138 * 0.02562 * 18 17 16 20 20 C 1.38878 * 120.87422 * 0.36796 * 19 18 17 21 21 O 1.35842 * 111.30767 * 178.98185 * 20 19 18 22 22 C 1.43782 * 109.23358 * 19.35502 * 21 20 19 23 23 C 1.53001 * 110.75340 * 90.42867 * 22 21 20 24 24 C 1.52994 * 110.75733 * 213.61322 * 22 21 20 25 25 C 1.51675 * 132.13591 * 180.91635 * 19 18 17 26 26 H 1.09004 * 109.47018 * 299.99677 * 1 2 3 27 27 H 1.08998 * 109.47611 * 59.99033 * 1 2 3 28 28 H 1.08996 * 109.47450 * 179.97438 * 1 2 3 29 29 H 0.97001 * 120.00085 * 180.02562 * 7 6 4 30 30 H 1.07997 * 119.90707 * 359.72944 * 16 15 13 31 31 H 1.07997 * 120.00951 * 179.85136 * 17 16 15 32 32 H 1.08000 * 119.82975 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47051 * 61.45393 * 23 22 21 34 34 H 1.08998 * 109.47238 * 181.45637 * 23 22 21 35 35 H 1.09001 * 109.47018 * 301.45480 * 23 22 21 36 36 H 1.09000 * 109.47236 * 58.54319 * 24 22 21 37 37 H 1.08999 * 109.47369 * 178.54522 * 24 22 21 38 38 H 1.09003 * 109.47198 * 298.54451 * 24 22 21 39 39 H 1.08997 * 110.94544 * 282.55502 * 25 19 18 40 40 H 1.09001 * 110.94353 * 46.24789 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9428 0.8294 2.6035 8 14 2.3215 -1.1207 4.0078 9 1 3.8065 -1.1213 4.0080 10 1 1.8272 -0.4204 5.2204 11 1 1.8260 -2.5206 4.0075 12 8 2.0139 -0.6844 -1.1857 13 6 2.2178 0.0671 -2.2854 14 8 1.9977 1.2617 -2.2543 15 6 2.7079 -0.5599 -3.5260 16 6 2.9617 -1.9321 -3.5631 17 6 3.4142 -2.5217 -4.7230 18 6 3.6151 -1.7521 -5.8589 19 6 3.3651 -0.3987 -5.8347 20 6 2.9162 0.2226 -4.6766 21 8 2.7547 1.5583 -4.8638 22 6 2.6577 1.8309 -6.2722 23 6 1.2001 1.7818 -6.7348 24 6 3.2851 3.1855 -6.6069 25 6 3.4716 0.6750 -6.9008 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7089 1.1610 3.4845 30 1 2.8027 -2.5332 -2.6800 31 1 3.6120 -3.5831 -4.7479 32 1 3.9695 -2.2170 -6.7670 33 1 0.6264 2.5457 -6.2101 34 1 1.1531 1.9654 -7.8082 35 1 0.7823 0.7991 -6.5157 36 1 4.3304 3.1881 -6.2979 37 1 3.2234 3.3592 -7.6811 38 1 2.7486 3.9746 -6.0799 39 1 4.5098 0.9685 -7.0559 40 1 3.0185 0.3428 -7.8349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847648245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:39 Heat of formation + Delta-G solvation = -119.506148 kcal Electronic energy + Delta-G solvation = -23200.835081 eV Core-core repulsion = 19752.089761 eV Total energy + Delta-G solvation = -3448.745320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.52431 -41.06530 -38.62250 -37.52549 -35.35326 -34.85572 -32.88326 -31.79708 -31.15890 -28.43713 -27.56098 -27.50028 -25.61342 -23.12352 -23.05954 -21.64919 -21.29324 -19.03424 -18.52334 -18.14812 -17.60005 -17.01457 -16.95674 -16.56600 -16.26587 -15.91103 -15.12613 -14.89295 -14.71647 -14.33840 -14.20357 -14.04645 -13.70797 -13.60905 -13.24953 -13.22317 -13.03626 -12.94700 -12.84280 -12.80627 -12.66749 -12.42219 -12.40061 -12.17704 -11.87540 -11.70857 -11.62062 -11.34115 -11.03302 -10.62546 -10.02053 -9.23102 -8.30520 -6.48636 -0.30301 0.27312 1.40115 1.45381 1.53221 1.60004 1.95059 2.15893 2.40353 2.69741 2.99816 3.35419 3.44861 3.79609 3.82171 3.91373 4.00329 4.15916 4.28680 4.39797 4.48591 4.60916 4.67205 4.68931 4.70577 4.73499 4.78425 4.83897 4.90595 4.96478 5.07571 5.15640 5.20330 5.23495 5.30389 5.37356 5.44311 5.56686 5.69780 5.85954 6.02242 6.14976 6.56566 6.92588 7.23149 8.77687 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024385 B = 0.004012 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.989848 B = 6977.775743 C = 7671.759357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.218 3.782 3 H 0.000 1.000 4 C -0.550 4.550 5 H 0.070 0.930 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.988 3.012 9 H -0.268 1.268 10 H -0.276 1.276 11 H -0.260 1.260 12 O -0.356 6.356 13 C 0.485 3.515 14 O -0.550 6.550 15 C -0.181 4.181 16 C -0.040 4.040 17 C -0.150 4.150 18 C -0.023 4.023 19 C -0.190 4.190 20 C 0.145 3.855 21 O -0.313 6.313 22 C 0.075 3.925 23 C -0.160 4.160 24 C -0.137 4.137 25 C -0.085 4.085 26 H 0.083 0.917 27 H 0.016 0.984 28 H 0.049 0.951 29 H 0.272 0.728 30 H 0.142 0.858 31 H 0.175 0.825 32 H 0.179 0.821 33 H 0.051 0.949 34 H 0.114 0.886 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.054 0.946 39 H 0.110 0.890 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.677 -4.946 -23.953 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.165 3.835 3 H 0.018 0.982 4 C -0.587 4.587 5 H 0.088 0.912 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.811 3.189 9 H -0.193 1.193 10 H -0.201 1.201 11 H -0.185 1.185 12 O -0.273 6.273 13 C 0.332 3.668 14 O -0.443 6.443 15 C -0.183 4.183 16 C -0.058 4.058 17 C -0.167 4.167 18 C -0.041 4.041 19 C -0.190 4.190 20 C 0.098 3.902 21 O -0.227 6.227 22 C 0.038 3.962 23 C -0.217 4.217 24 C -0.194 4.194 25 C -0.121 4.121 26 H 0.102 0.898 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.193 0.807 32 H 0.196 0.804 33 H 0.070 0.930 34 H 0.132 0.868 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.135 0.865 38 H 0.073 0.927 39 H 0.128 0.872 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.478 -4.264 -23.613 24.612 hybrid contribution -0.238 0.462 1.531 1.617 sum 5.240 -3.802 -22.082 23.011 Atomic orbital electron populations 1.21969 0.96740 1.00461 1.00557 1.20364 0.92071 0.91943 0.79156 0.98185 1.21257 1.33675 1.14050 0.89717 0.91164 1.25913 0.94598 0.95658 1.02286 1.70029 1.36526 1.23741 1.25364 0.85157 0.78742 0.78677 0.76354 1.19313 1.20087 1.18463 1.86510 1.76591 1.43081 1.21118 1.21852 0.74456 0.85184 0.85267 1.90764 1.50554 1.17774 1.85222 1.18777 1.14442 0.95192 0.89853 1.21446 0.93258 0.90638 1.00498 1.21453 1.01912 1.02287 0.91071 1.21064 0.92953 0.90266 0.99823 1.21186 1.06314 0.96753 0.94785 1.19792 0.92288 0.84071 0.94083 1.87050 1.86712 1.19720 1.29209 1.23359 0.97448 0.98404 0.76950 1.22214 0.93661 1.02020 1.03775 1.21876 1.00731 0.92715 1.04111 1.21960 1.02548 0.89883 0.97706 0.89821 0.96485 0.93228 0.91912 0.84036 0.80727 0.80366 0.93009 0.86776 0.93287 0.91713 0.86547 0.92696 0.87212 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.81 9.33 71.98 0.67 -7.14 16 2 C 0.22 13.08 2.56 29.85 0.08 13.15 16 3 H 0.00 0.02 7.16 -2.38 -0.02 0.01 16 4 C -0.55 -32.89 8.90 25.60 0.23 -32.66 16 5 H 0.07 4.06 7.81 -2.91 -0.02 4.04 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -55.09 11.32 21.45 0.24 -54.84 16 8 Si 0.99 44.17 29.54 68.60 2.03 46.20 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 12 O -0.36 -19.29 9.09 -56.57 -0.51 -19.80 16 13 C 0.49 24.90 7.86 70.23 0.55 25.45 16 14 O -0.55 -32.01 15.12 25.17 0.38 -31.63 16 15 C -0.18 -7.16 5.89 -19.94 -0.12 -7.28 16 16 C -0.04 -1.22 9.59 22.48 0.22 -1.01 16 17 C -0.15 -2.96 10.05 22.26 0.22 -2.74 16 18 C -0.02 -0.40 10.02 22.23 0.22 -0.18 16 19 C -0.19 -4.36 6.26 -19.54 -0.12 -4.48 16 20 C 0.14 5.05 6.63 23.02 0.15 5.20 16 21 O -0.31 -11.48 9.55 -76.86 -0.73 -12.21 16 22 C 0.07 1.69 1.26 -10.21 -0.01 1.68 16 23 C -0.16 -3.20 8.84 71.98 0.64 -2.56 16 24 C -0.14 -2.40 8.96 71.98 0.65 -1.76 16 25 C -0.08 -1.34 6.19 30.75 0.19 -1.15 16 26 H 0.08 4.93 6.07 -2.39 -0.01 4.92 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 2.57 8.14 -2.39 -0.02 2.56 16 29 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.14 4.36 7.59 -2.91 -0.02 4.34 16 31 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 32 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.10 8.12 -2.39 -0.02 1.08 16 36 H 0.06 1.15 8.12 -2.39 -0.02 1.14 16 37 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.11 1.39 7.91 -2.39 -0.02 1.37 16 40 H 0.13 1.13 7.92 -2.39 -0.02 1.11 16 Total: -1.00 -81.51 337.56 6.45 -75.07 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.03 Total: 11.38 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 4.01 Total: -14.16 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.24 Total: -54.84 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: -0.87 Total: -63.64 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -81.51 6.45 -75.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847648245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.437 kcal (2) G-P(sol) polarization free energy of solvation -81.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds